ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18n20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1I10R2_MOUSE (Q61190) Interleukin-10 receptor beta chain precurso... 32 1.6
2YEBS_ECOLI (P0AD03) Inner membrane protein yebS 31 3.5
3YEBS_ECO57 (P0AD04) Inner membrane protein yebS 31 3.5

>I10R2_MOUSE (Q61190) Interleukin-10 receptor beta chain precursor (IL-10R-B)|
           (IL-10R2) (Cytokine receptor family 2 member 4)
           (Cytokine receptor class-II member 4) (CRF2-4) (CDw210b
           antigen)
          Length = 349

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = -2

Query: 136 FLKLTIPIHWLVIPQTKHHLNSGPG-----RGFLSHPHANSLHKNFLPPP 2
           FL     + WL+  +TKH   SG       + FL HPH ++      PPP
Sbjct: 237 FLLGCFVVLWLIYKKTKHTFRSGTSLPQHLKEFLGHPHHSTFLLFSFPPP 286



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>YEBS_ECOLI (P0AD03) Inner membrane protein yebS|
          Length = 427

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 201 LQKLAKVAFGSRXRIPGGWG*PFFVVWLQGIR 296
           L +LA +AF     +P  WG P   +WL GIR
Sbjct: 66  LTRLAAMAFTMLLLMPFAWGEPLLHIWLLGIR 97



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>YEBS_ECO57 (P0AD04) Inner membrane protein yebS|
          Length = 427

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 201 LQKLAKVAFGSRXRIPGGWG*PFFVVWLQGIR 296
           L +LA +AF     +P  WG P   +WL GIR
Sbjct: 66  LTRLAAMAFTMLLLMPFAWGEPLLHIWLLGIR 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,237,339
Number of Sequences: 219361
Number of extensions: 2516663
Number of successful extensions: 4768
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4765
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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