ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18n19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YEBS_ECOLI (P0AD03) Inner membrane protein yebS 32 2.4
2YEBS_ECO57 (P0AD04) Inner membrane protein yebS 32 2.4
3IRS2B_XENLA (Q5RJW5) Insulin receptor substrate 2-B (IRS-2-B) 30 9.2
4GDA0_WHEAT (P02863) Alpha/beta-gliadin precursor (Prolamin) 30 9.2
5IRS2A_XENLA (Q9DF49) Insulin receptor substrate 2-A (IRS-2-A) (I... 30 9.2

>YEBS_ECOLI (P0AD03) Inner membrane protein yebS|
          Length = 427

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 225 LQKLAKVAFGSRVRIPGGWG*PFFVVWLQGIR 320
           L +LA +AF   + +P  WG P   +WL GIR
Sbjct: 66  LTRLAAMAFTMLLLMPFAWGEPLLHIWLLGIR 97



to top

>YEBS_ECO57 (P0AD04) Inner membrane protein yebS|
          Length = 427

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 225 LQKLAKVAFGSRVRIPGGWG*PFFVVWLQGIR 320
           L +LA +AF   + +P  WG P   +WL GIR
Sbjct: 66  LTRLAAMAFTMLLLMPFAWGEPLLHIWLLGIR 97



to top

>IRS2B_XENLA (Q5RJW5) Insulin receptor substrate 2-B (IRS-2-B)|
          Length = 1077

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 669 DALTRPNGLRV---P*GKFYLADAGYGAKPGFLPPFRGVRYHLNEWGNNPPINEK 514
           + LTRP+   V   P    +++   YG+ PG L  FR      +  GN PPI E+
Sbjct: 439 ETLTRPSSSSVCGSPSDGGFISSDEYGSSPGDLRYFRVRSNTPDSLGNTPPIQEE 493



to top

>GDA0_WHEAT (P02863) Alpha/beta-gliadin precursor (Prolamin)|
          Length = 286

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -2

Query: 266 PHP*TKRHLSQLLKEYS*VSVYPHPTLPSNQTSGIFPKTDYPYPLVGYPSNQTP 105
           P+P  +   SQL   Y  +  +P P LP +Q     P+  YP P   Y   Q P
Sbjct: 62  PYPQPQPFPSQL--PYLQLQPFPQPQLPYSQPQPFRPQQPYPQPQPQYSQPQQP 113



to top

>IRS2A_XENLA (Q9DF49) Insulin receptor substrate 2-A (IRS-2-A) (Insulin receptor|
           substrate-unique) (Insulin receptor
           substrate-undetermined designation) (xIRS-u)
          Length = 1074

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 669 DALTRPNGLRV---P*GKFYLADAGYGAKPGFLPPFRGVRYHLNEWGNNPPINEK 514
           + LTRP+   V   P    +++   YG+ PG L  FR      +  GN PPI E+
Sbjct: 436 ETLTRPSSSSVCGSPSDGGFISSDEYGSSPGDLRYFRVRSNTPDSLGNTPPIQEE 490


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,865,323
Number of Sequences: 219361
Number of extensions: 2655867
Number of successful extensions: 5303
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5302
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6969622431
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top