ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19c18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY033628.1| Hordeum vulgare subsp. vulgare horcolin mRNA, complete cds Length = 665 Score = 1178 bits (594), Expect = 0.0 Identities = 603/606 (99%) Strand = Plus / Minus Query: 125 gcagcgtcacacataatcacacacatatgctaaagtgccatgtaaggcacttcacaagtt 184 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 665 gcagcgtcacacattatcccacacatatgctaaagtgccatgtaaggcacttcacaagtt 606 Query: 185 tatttattctagcaagcagacgctgccggtagtactacgccacctccttcctccagagga 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 605 tatttattctagcaagcagacgctgccggtagtactacgccacctccttcctccagagga 546 Query: 245 gaagtggccggccgatatcaaccaaccattcatggagtaatgtagaacccaatcgcgtcc 304 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 545 gaggtggccggccgatatcaaccaaccattcatggagtaatgtagaacccaatcgcgtcc 486 Query: 305 aggaaagcaccagcccgtccaaagaagccggcgatcttacccccgtcaagcaccgggacg 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 485 aggaaagcaccagcccgtccaaagaagccggcgatcttacccccgtcaagcaccgggacg 426 Query: 365 cggaatggaattccggtacctgagccgtatgtcctggtaacccccttggaggtgataatt 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 425 cggaatggaattccggtacctgagccgtatgtcctggtaacccccttggaggtgataatt 366 Query: 425 ttaagagacgtgacgatgtcgtcggtcccaaatttacccactgtcccggagatttcggtc 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 365 ttaagagacgtgacgatgtcgtcggtcccaaatttacccactgtcccggagatttcggtc 306 Query: 485 acgtagttcgtagcgtctagattaatcgtatcttctgtgccgccagtgccaccccacttg 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 acgtagttcgtagcgtctagattaatcgtatcttctgtgccgccagtgccaccccacttg 246 Query: 545 atgccggaagagtgttgaacgttatcggtgcccacataggtgaatgcaatagcgtcaacg 604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 atgccggaagagtgttgaacgttatcggtgcccacataggtgaatgcaatagcgtcaacg 186 Query: 605 atagctccgctactgacggtcatactaaccatacggatgggctttggctggacatcacgc 664 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 atagctccgctactgacggtcatactaaccatacggatgggctttggctggacatcacgc 126 Query: 665 tcgctgccaccattcccaccccatggcccaatcttcacaggcttgctcattttggctcct 724 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 tcgctgccaccattcccaccccatggcccaatcttcacaggcttgctcattttggctcct 66 Query: 725 gcttta 730 |||||| Sbjct: 65 gcttta 60
>gb|AY770690.1| Hordeum vulgare horcolin gene, complete cds Length = 1338 Score = 735 bits (371), Expect = 0.0 Identities = 383/387 (98%) Strand = Plus / Minus Query: 125 gcagcgtcacacataatcacacacatatgctaaagtgccatgtaaggcacttcacaagtt 184 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1338 gcagcgtcacacattatcccacacatatgctaaagtgccatgtaaggcacttcacaagtt 1279 Query: 185 tatttattctagcaagcagacgctgccggtagtactacgccacctccttcctccagagga 244 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1278 tatttattctagcaagcagacgctgccggtagtactacgccacctccttcttccagagga 1219 Query: 245 gaagtggccggccgatatcaaccaaccattcatggagtaatgtagaacccaatcgcgtcc 304 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1218 gaggtggccggccgatatcaaccaaccattcatggagtaatgtagaacccaatcgcgtcc 1159 Query: 305 aggaaagcaccagcccgtccaaagaagccggcgatcttacccccgtcaagcaccgggacg 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1158 aggaaagcaccagcccgtccaaagaagccggcgatcttacccccgtcaagcaccgggacg 1099 Query: 365 cggaatggaattccggtacctgagccgtatgtcctggtaacccccttggaggtgataatt 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1098 cggaatggaattccggtacctgagccgtatgtcctggtaacccccttggaggtgataatt 1039 Query: 425 ttaagagacgtgacgatgtcgtcggtcccaaatttacccactgtcccggagatttcggtc 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1038 ttaagagacgtgacgatgtcgtcggtcccaaatttacccactgtcccggagatttcggtc 979 Query: 485 acgtagttcgtagcgtctagattaatc 511 ||||||||||||||||||||||||||| Sbjct: 978 acgtagttcgtagcgtctagattaatc 952 Score = 400 bits (202), Expect = e-108 Identities = 202/202 (100%) Strand = Plus / Minus Query: 511 cgtatcttctgtgccgccagtgccaccccacttgatgccggaagagtgttgaacgttatc 570 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 784 cgtatcttctgtgccgccagtgccaccccacttgatgccggaagagtgttgaacgttatc 725 Query: 571 ggtgcccacataggtgaatgcaatagcgtcaacgatagctccgctactgacggtcatact 630 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 724 ggtgcccacataggtgaatgcaatagcgtcaacgatagctccgctactgacggtcatact 665 Query: 631 aaccatacggatgggctttggctggacatcacgctcgctgccaccattcccaccccatgg 690 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 664 aaccatacggatgggctttggctggacatcacgctcgctgccaccattcccaccccatgg 605 Query: 691 cccaatcttcacaggcttgctc 712 |||||||||||||||||||||| Sbjct: 604 cccaatcttcacaggcttgctc 583
>gb|DQ016627.1| Agrostis stolonifera Crs-1 mRNA, complete cds Length = 1283 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 674 ccattcccaccccatggcccaa 695 |||||||||||||||||||||| Sbjct: 599 ccattcccaccccatggcccaa 578
>gb|AC107702.12| Mus musculus chromosome 3, clone RP23-391G19, complete sequence Length = 219296 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 tcctccagaggagaagtggcc 253 ||||||||||||||||||||| Sbjct: 156180 tcctccagaggagaagtggcc 156200
>gb|AC013604.9|AC013604 Homo sapiens, clone RP11-10E14, complete sequence Length = 167236 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 acacataatcacacacatatg 153 ||||||||||||||||||||| Sbjct: 70663 acacataatcacacacatatg 70683
>emb|BX001055.11| Zebrafish DNA sequence from clone CH211-87M5 in linkage group 9, complete sequence Length = 194418 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 cacacataatcacacacatat 152 ||||||||||||||||||||| Sbjct: 182036 cacacataatcacacacatat 182016
>gb|AC127305.5| Mus musculus BAC clone RP23-289H23 from 3, complete sequence Length = 211760 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 tcctccagaggagaagtggcc 253 ||||||||||||||||||||| Sbjct: 105977 tcctccagaggagaagtggcc 105997
>emb|AL627098.30| Mouse DNA sequence from clone RP23-108K17 on chromosome 4, complete sequence Length = 208131 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 cacacataatcacacacatat 152 ||||||||||||||||||||| Sbjct: 102177 cacacataatcacacacatat 102197
>gb|AC132258.3| Mus musculus BAC clone RP24-361F13 from 1, complete sequence Length = 130493 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 tcacacataatcacacacata 151 ||||||||||||||||||||| Sbjct: 66801 tcacacataatcacacacata 66821 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,106,576 Number of Sequences: 3902068 Number of extensions: 5106576 Number of successful extensions: 93598 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93579 Number of HSP's gapped (non-prelim): 19 length of query: 730 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 707 effective length of database: 17,143,297,704 effective search space: 12120311476728 effective search space used: 12120311476728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
