>SNX2_MOUSE (Q9CWK8) Sorting nexin-2|
          Length = 519

 Score = 30.0 bits (66), Expect(2) = 0.58
 Identities = 16/92 (17%), Positives = 38/92 (41%)
 Frame = -3

Query: 511 KYKELNLEKMKFMNPXXXXXXXXXXXELKAASEEATKRYEHIVSVMNDELARFQEQKTAD 332
           K +E   + M    P           E +A  ++  + +E I   +  E+ RF++++  D
Sbjct: 426 KKRETEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKD 485

Query: 331 IGLAFHEFAKGQAKLAKDIADAWRSVLPKLEA 236
                 ++ +   +  + +   W + LP+ +A
Sbjct: 486 FKAVIIKYLESLVQTQQQLIKYWEAFLPEAKA 517



 Score = 21.9 bits (45), Expect(2) = 0.58
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 608 LKDYVRAVQSIKATMS*SSQCFQ 540
           L DY+R + ++K       +C+Q
Sbjct: 393 LSDYIRLIAAVKGVFDHRMKCWQ 415

>SNX2_HUMAN (O60749) Sorting nexin-2|
          Length = 519

 Score = 30.0 bits (66), Expect(2) = 0.58
 Identities = 16/92 (17%), Positives = 38/92 (41%)
 Frame = -3

Query: 511 KYKELNLEKMKFMNPXXXXXXXXXXXELKAASEEATKRYEHIVSVMNDELARFQEQKTAD 332
           K +E   + M    P           E +A  ++  + +E I   +  E+ RF++++  D
Sbjct: 426 KKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKD 485

Query: 331 IGLAFHEFAKGQAKLAKDIADAWRSVLPKLEA 236
                 ++ +   +  + +   W + LP+ +A
Sbjct: 486 FKTVIIKYLESLVQTQQQLIKYWEAFLPEAKA 517



 Score = 21.9 bits (45), Expect(2) = 0.58
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 608 LKDYVRAVQSIKATMS*SSQCFQ 540
           L DY+R + ++K       +C+Q
Sbjct: 393 LSDYIRLIAAVKGVFDHRMKCWQ 415

>SNX1_MOUSE (Q9WV80) Sorting nexin-1|
          Length = 522

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = -3

Query: 397 YEHIVSVMNDELARFQEQKTADIGLAFHEFAKGQAKLAKDIADAWRSVLPKLEACS 230
           +E I +V+  E+ RF+++K+ D      ++ +      + +A  W + LP+ +A S
Sbjct: 467 FERISTVVRKEVTRFEKEKSKDFKNHVMKYLETLLHSQQQLAKYWEAFLPEAKAIS 522

>ZN11A_HUMAN (P17013) Zinc finger protein 11A (Zinc finger protein KOX2)|
           (Fragments)
          Length = 301

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
 Frame = +3

Query: 60  THTVKKRCQYNNRSIVNHHFSSI-HEPLS----NWAGKNQPKTQRANHYFNTTGKHSFDY 224
           THT +K     NR+ ++HH  ++ HE +     N+      +T      FNT  + + + 
Sbjct: 46  THTQEKNEVLKNRNTLSHHEETLQHEKIQTLEHNFEYSICQETLLEKAVFNTQKRENAEE 105

Query: 225 EAEQASSFGRTLRHASAMSLANFA*PFANSWNASPISAVFC 347
                + FGRTL  +S++     +    N +  S      C
Sbjct: 106 NNCDYNEFGRTLCDSSSLLFHQISPSRDNHYEFSDCEKFLC 146

>SODM_CHLRE (Q42684) Superoxide dismutase [Mn], mitochondrial precursor (EC|
           1.15.1.1)
          Length = 218

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -3

Query: 406 TKRYEHIVSVMNDELARFQEQKTADIGLAFHEFAKGQAKLAKDIADAWRS 257
           TK ++  V+ +N  L +F E K  D+GL     A G  KL KD+A   R+
Sbjct: 29  TKHHQTYVNNLNAALDKFPELK--DLGLVDLNKAVGTDKLPKDVATVIRN 76

>ZN33A_HUMAN (Q06730) Zinc finger protein 33A (Zinc finger protein KOX31) (Zinc|
           finger and ZAK-associated protein with KRAB domain)
           (ZZaPK)
          Length = 810

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
 Frame = +3

Query: 60  THTVKKRCQYNNRSIVNHHFSSI-HEPLS----NWAGKNQPKTQRANHYFNTTGKHSFDY 224
           THT +K     NR+ ++HH  ++ HE +     N+      +T      FNT  + + + 
Sbjct: 184 THTQEKNEVLKNRNTLSHHEETLQHEKIQTLEHNFEYSICQETLLEKAVFNTQKRENAEE 243

Query: 225 EAEQASSFGRTLRHASAMSLANFA*PFANSWNASPISAVFC 347
                + FGRTL  +S++     +    N +  S      C
Sbjct: 244 NNCDYNEFGRTLCDSSSLLFHQISPSRDNHYEFSDCEKFLC 284

>YQEK_BACSU (P54456) Protein yqeK|
          Length = 186

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = -3

Query: 400 RYEHIVSVMND--ELA-RF-QEQKTADIGLAFHEFAKGQAK 290
           RY H V VMN   ELA RF  + K A+I   FH++AK + K
Sbjct: 18  RYIHTVGVMNTAIELAERFGADSKKAEIAAIFHDYAKFRPK 58

>SNX41_YARLI (Q6C9X0) Sorting nexin-41|
          Length = 570

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -3

Query: 430 LKAASEEATKRYEHIVSVMNDELARFQEQKTADIGLAFHEFAKGQAKLAKDIADAWRSVL 251
           L+ A E A K        +  +L RF+ ++ AD+      F K     AK   D W+S  
Sbjct: 505 LEQALEVAQKDIVVANESVEKDLERFRAEREADLKCMIRAFLKCHIDWAKQNLDTWQSAQ 564

Query: 250 PKLEA 236
            ++E+
Sbjct: 565 AEVES 569


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,428,032
Number of Sequences: 219361
Number of extensions: 1472834
Number of successful extensions: 3886
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3886
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)