ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19c16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK120353.1| Oryza sativa (japonica cultivar-group) cDNA clon... 319 6e-84
2dbj|AK102304.1| Oryza sativa (japonica cultivar-group) cDNA clon... 319 6e-84
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 246 7e-62
4dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic D... 246 7e-62
5dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic D... 246 7e-62
6ref|NM_190716.1| Oryza sativa (japonica cultivar-group), predic... 242 1e-60
7gb|AF162682.1|AF162682 Zea mays mutant sh2-7527 alien mRNA sequence 224 3e-55
8gb|AF293457.1|AF293457S1 Zea mays truncated insertion sequence V... 96 2e-16
9gb|AE016830.1| Enterococcus faecalis V583, complete genome 46 0.13
10emb|AL732395.9| Human DNA sequence from clone RP11-77F5 on chrom... 44 0.53
11ref|NM_120696.2| Arabidopsis thaliana unknown protein AT5G06140 ... 42 2.1
12ref|XM_509473.1| PREDICTED: Pan troglodytes similar to CG1842-PA... 42 2.1
13ref|XM_424703.1| PREDICTED: Gallus gallus similar to ankyrin rep... 42 2.1
14ref|XM_425390.1| PREDICTED: Gallus gallus similar to Williams Be... 42 2.1
15emb|CR387978.12| Zebrafish DNA sequence from clone DKEY-33M5 in ... 42 2.1
16gb|AC091091.2| Gallus gallus clone WAG-93J15, complete sequence 42 2.1
17gb|AY080809.1| Arabidopsis thaliana putative sorting nexin prote... 42 2.1
18dbj|AK091526.1| Homo sapiens cDNA FLJ34207 fis, clone FCBBF30201... 42 2.1
19emb|CR407078.1| Gallus gallus finished cDNA, clone ChEST749e9 42 2.1
20dbj|AB095937.2| Homo sapiens mRNA for KIAA2017 protein, partial cds 42 2.1
21gb|AC079315.30| Homo sapiens 12 BAC RP11-380L11 (Roswell Park Ca... 42 2.1
22emb|BX830901.1|CNS0A0TB Arabidopsis thaliana Full-length cDNA Co... 42 2.1
23gb|AC023090.12| Homo sapiens chromosome 18, clone RP11-800A18, c... 42 2.1
24dbj|AP002544.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 2.1
25gb|CP000027.1| Dehalococcoides ethenogenes 195, complete genome 40 8.3
26gb|AC102638.13| Mus musculus chromosome 3, clone RP23-406D2, com... 40 8.3
27gb|AC162373.11| Mus musculus chromosome 18, clone RP23-410M11, c... 40 8.3
28ref|NM_175354.2| Mus musculus RIKEN cDNA C030016D13 gene (C03001... 40 8.3
29gb|AC132595.3| Mus musculus BAC clone RP24-229G7 from chromosome... 40 8.3
30gb|AC102361.13| Mus musculus chromosome 18, clone RP23-37I2, com... 40 8.3
31gb|AY326102.1| Peromyscus maniculatus interphotoreceptor retinoi... 40 8.3
32gb|AC025540.7| Homo sapiens BAC clone RP11-295N22 from 7, comple... 40 8.3
33gb|AC004485.2| Homo sapiens BAC clone CTB-118E13 from 7, complet... 40 8.3
34gb|AC165968.3| Mus musculus BAC clone RP23-181K4 from chromosome... 40 8.3
35gb|AC142353.1| Pan troglodytes BAC clone RP43-21M1 from 7, compl... 40 8.3
36gb|AC124973.8| Mus musculus strain C57BL/6J clone rp23-329l13 ma... 40 8.3
37emb|AL359770.12| Human DNA sequence from clone RP11-286B9 on chr... 40 8.3
38emb|CR380955.1| Candida glabrata strain CBS138 chromosome I comp... 40 8.3
39gb|DQ191517.1| Petromyscus collinus interphotoreceptor retinoid-... 40 8.3
40gb|AC008929.3| Homo sapiens chromosome 5, complete sequence 40 8.3
41gb|AC159823.2| Mus musculus BAC clone RP23-113F14 from chromosom... 40 8.3
42gb|AC159274.2| Mus musculus BAC clone RP23-405C6 from chromosome... 40 8.3
43gb|AC027347.5|AC027347 Homo sapiens chromosome 5 clone CTD-2562I... 40 8.3
44dbj|AK047713.1| Mus musculus adult male corpus striatum cDNA, RI... 40 8.3
45dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
46gb|BC094907.1| Mus musculus cDNA clone IMAGE:30021652 40 8.3
47gb|AC153497.8| Mus musculus 10 BAC RP23-226H21 (Roswell Park Can... 40 8.3
48gb|AC147298.4| Pan troglodytes BAC clone RP43-58G7 from chromoso... 40 8.3
49dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
50gb|AC153825.7| Mus musculus 10 BAC RP23-70B19 (Roswell Park Canc... 40 8.3
51gb|AC148973.4| Mus musculus BAC clone RP24-117C3 from 7, complet... 40 8.3 
>dbj|AK120353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066C10, full
            insert sequence
          Length = 1652

 Score =  319 bits (161), Expect = 6e-84
 Identities = 333/389 (85%), Gaps = 1/389 (0%)
 Strand = Plus / Minus

                                                                        
Query: 221  ttatgaagcggaacaggcttctagctttgggaggacgctgcgccacgcatcagcaatgtc 280
            |||||||| |||||||||||| ||||||||||||||||  ||||| ||||||||||| ||
Sbjct: 1394 ttatgaagtggaacaggcttcgagctttgggaggacgcctcgccatgcatcagcaatatc 1335

                                                                        
Query: 281  tttagctaactttgcttgacctttcgcaaactcatggaatgcaagtccaatatcagctgt 340
            |||||||||||||||||| ||||| ||||| ||||||||||| | |||||||||||||||
Sbjct: 1334 tttagctaactttgcttggcctttggcaaattcatggaatgcgaatccaatatcagctgt 1275

                                                                        
Query: 341  tttctgctcttggaatcgtgcaagctcgtcgttcattacactaactatgtgctcgtacct 400
            ||||||||||||||| ||||||||||| || ||||||||   ||||||||||||  ||||
Sbjct: 1274 tttctgctcttggaaacgtgcaagctcttcattcattactgcaactatgtgctcaaacct 1215

                                                                        
Query: 401  cttcgtagcctcctcactggctgctttcaactcactgaactcagtttctgactcggaaaa 460
            ||| ||||||||||||||| ||||| ||||||| | || ||||| ||||   || |||||
Sbjct: 1214 ctttgtagcctcctcactgtctgctgtcaactctcggacctcagcttctagttcagaaaa 1155

                                                                        
Query: 461  cttctcagggttcatgaacttcattttttcaaggttaagctctttatacttcctctcctg 520
             || |||||||||| |||||||| |||||| || |||| | ||||||| | | ||| |||
Sbjct: 1154 tttatcagggttcacgaacttcaatttttcgagattaacccctttatattccttctgctg 1095

                                                                        
Query: 521  gtccaagtcaaagtgctgcctgaaagcattggctcgatcaagacatagtggcctttattg 580
                || |||   |||||||||||||||||||||||||| |  |||||| || |||||||
Sbjct: 1094 aaataaatcatgatgctgcctgaaagcattggctcgatcca-ccatagttgcttttattg 1036

                                         
Query: 581  actgcacagcacgcacataatctttcaaa 609
            ||||||||||||| |||||||||||||||
Sbjct: 1035 actgcacagcacgtacataatctttcaaa 1007
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>dbj|AK102304.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089O16, full
            insert sequence
          Length = 1610

 Score =  319 bits (161), Expect = 6e-84
 Identities = 333/389 (85%), Gaps = 1/389 (0%)
 Strand = Plus / Minus

                                                                        
Query: 221  ttatgaagcggaacaggcttctagctttgggaggacgctgcgccacgcatcagcaatgtc 280
            |||||||| |||||||||||| ||||||||||||||||  ||||| ||||||||||| ||
Sbjct: 1358 ttatgaagtggaacaggcttcgagctttgggaggacgcctcgccatgcatcagcaatatc 1299

                                                                        
Query: 281  tttagctaactttgcttgacctttcgcaaactcatggaatgcaagtccaatatcagctgt 340
            |||||||||||||||||| ||||| ||||| ||||||||||| | |||||||||||||||
Sbjct: 1298 tttagctaactttgcttggcctttggcaaattcatggaatgcgaatccaatatcagctgt 1239

                                                                        
Query: 341  tttctgctcttggaatcgtgcaagctcgtcgttcattacactaactatgtgctcgtacct 400
            ||||||||||||||| ||||||||||| || ||||||||   ||||||||||||  ||||
Sbjct: 1238 tttctgctcttggaaacgtgcaagctcttcattcattactgcaactatgtgctcaaacct 1179

                                                                        
Query: 401  cttcgtagcctcctcactggctgctttcaactcactgaactcagtttctgactcggaaaa 460
            ||| ||||||||||||||| ||||| ||||||| | || ||||| ||||   || |||||
Sbjct: 1178 ctttgtagcctcctcactgtctgctgtcaactctcggacctcagcttctagttcagaaaa 1119

                                                                        
Query: 461  cttctcagggttcatgaacttcattttttcaaggttaagctctttatacttcctctcctg 520
             || |||||||||| |||||||| |||||| || |||| | ||||||| | | ||| |||
Sbjct: 1118 tttatcagggttcacgaacttcaatttttcgagattaacccctttatattccttctgctg 1059

                                                                        
Query: 521  gtccaagtcaaagtgctgcctgaaagcattggctcgatcaagacatagtggcctttattg 580
                || |||   |||||||||||||||||||||||||| |  |||||| || |||||||
Sbjct: 1058 aaataaatcatgatgctgcctgaaagcattggctcgatcca-ccatagttgcttttattg 1000

                                         
Query: 581  actgcacagcacgcacataatctttcaaa 609
            ||||||||||||| |||||||||||||||
Sbjct: 999  actgcacagcacgtacataatctttcaaa 971
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  246 bits (124), Expect = 7e-62
 Identities = 190/212 (89%)
 Strand = Plus / Plus

                                                                            
Query: 221      ttatgaagcggaacaggcttctagctttgggaggacgctgcgccacgcatcagcaatgtc 280
                |||||||| |||||||||||| ||||||||||||||||  ||||| ||||||||||| ||
Sbjct: 37309737 ttatgaagtggaacaggcttcgagctttgggaggacgcctcgccatgcatcagcaatatc 37309796

                                                                            
Query: 281      tttagctaactttgcttgacctttcgcaaactcatggaatgcaagtccaatatcagctgt 340
                |||||||||||||||||| ||||| ||||| ||||||||||| | |||||||||||||||
Sbjct: 37309797 tttagctaactttgcttggcctttggcaaattcatggaatgcgaatccaatatcagctgt 37309856

                                                                            
Query: 341      tttctgctcttggaatcgtgcaagctcgtcgttcattacactaactatgtgctcgtacct 400
                ||||||||||||||| ||||||||||| || ||||||||   ||||||||||||  ||||
Sbjct: 37309857 tttctgctcttggaaacgtgcaagctcttcattcattactgcaactatgtgctcaaacct 37309916

                                                
Query: 401      cttcgtagcctcctcactggctgctttcaact 432
                ||| ||||||||||||||| ||||| ||||||
Sbjct: 37309917 ctttgtagcctcctcactgtctgctgtcaact 37309948



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                                    
Query: 574      tttattgactgcacagcacgcacataatctttcaaa 609
                |||||||||||||||||||| |||||||||||||||
Sbjct: 37310539 tttattgactgcacagcacgtacataatctttcaaa 37310574



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                          
Query: 534      tgctgcctgaaagcattggctcgatc 559
                ||||||||||||||||||||||||||
Sbjct: 37310390 tgctgcctgaaagcattggctcgatc 37310415
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>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0423B08
          Length = 151490

 Score =  246 bits (124), Expect = 7e-62
 Identities = 190/212 (89%)
 Strand = Plus / Plus

                                                                         
Query: 221   ttatgaagcggaacaggcttctagctttgggaggacgctgcgccacgcatcagcaatgtc 280
             |||||||| |||||||||||| ||||||||||||||||  ||||| ||||||||||| ||
Sbjct: 21771 ttatgaagtggaacaggcttcgagctttgggaggacgcctcgccatgcatcagcaatatc 21830

                                                                         
Query: 281   tttagctaactttgcttgacctttcgcaaactcatggaatgcaagtccaatatcagctgt 340
             |||||||||||||||||| ||||| ||||| ||||||||||| | |||||||||||||||
Sbjct: 21831 tttagctaactttgcttggcctttggcaaattcatggaatgcgaatccaatatcagctgt 21890

                                                                         
Query: 341   tttctgctcttggaatcgtgcaagctcgtcgttcattacactaactatgtgctcgtacct 400
             ||||||||||||||| ||||||||||| || ||||||||   ||||||||||||  ||||
Sbjct: 21891 tttctgctcttggaaacgtgcaagctcttcattcattactgcaactatgtgctcaaacct 21950

                                             
Query: 401   cttcgtagcctcctcactggctgctttcaact 432
             ||| ||||||||||||||| ||||| ||||||
Sbjct: 21951 ctttgtagcctcctcactgtctgctgtcaact 21982



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                                 
Query: 574   tttattgactgcacagcacgcacataatctttcaaa 609
             |||||||||||||||||||| |||||||||||||||
Sbjct: 22573 tttattgactgcacagcacgtacataatctttcaaa 22608



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 534   tgctgcctgaaagcattggctcgatc 559
             ||||||||||||||||||||||||||
Sbjct: 22424 tgctgcctgaaagcattggctcgatc 22449
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>dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0679C12
          Length = 153666

 Score =  246 bits (124), Expect = 7e-62
 Identities = 190/212 (89%)
 Strand = Plus / Plus

                                                                          
Query: 221    ttatgaagcggaacaggcttctagctttgggaggacgctgcgccacgcatcagcaatgtc 280
              |||||||| |||||||||||| ||||||||||||||||  ||||| ||||||||||| ||
Sbjct: 146726 ttatgaagtggaacaggcttcgagctttgggaggacgcctcgccatgcatcagcaatatc 146785

                                                                          
Query: 281    tttagctaactttgcttgacctttcgcaaactcatggaatgcaagtccaatatcagctgt 340
              |||||||||||||||||| ||||| ||||| ||||||||||| | |||||||||||||||
Sbjct: 146786 tttagctaactttgcttggcctttggcaaattcatggaatgcgaatccaatatcagctgt 146845

                                                                          
Query: 341    tttctgctcttggaatcgtgcaagctcgtcgttcattacactaactatgtgctcgtacct 400
              ||||||||||||||| ||||||||||| || ||||||||   ||||||||||||  ||||
Sbjct: 146846 tttctgctcttggaaacgtgcaagctcttcattcattactgcaactatgtgctcaaacct 146905

                                              
Query: 401    cttcgtagcctcctcactggctgctttcaact 432
              ||| ||||||||||||||| ||||| ||||||
Sbjct: 146906 ctttgtagcctcctcactgtctgctgtcaact 146937



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                                  
Query: 574    tttattgactgcacagcacgcacataatctttcaaa 609
              |||||||||||||||||||| |||||||||||||||
Sbjct: 147528 tttattgactgcacagcacgtacataatctttcaaa 147563



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                        
Query: 534    tgctgcctgaaagcattggctcgatc 559
              ||||||||||||||||||||||||||
Sbjct: 147379 tgctgcctgaaagcattggctcgatc 147404
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>ref|NM_190716.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 987

 Score =  242 bits (122), Expect = 1e-60
 Identities = 188/210 (89%)
 Strand = Plus / Minus

                                                                       
Query: 221 ttatgaagcggaacaggcttctagctttgggaggacgctgcgccacgcatcagcaatgtc 280
           |||||||| |||||||||||| ||||||||||||||||  ||||| ||||||||||| ||
Sbjct: 987 ttatgaagtggaacaggcttcgagctttgggaggacgcctcgccatgcatcagcaatatc 928

                                                                       
Query: 281 tttagctaactttgcttgacctttcgcaaactcatggaatgcaagtccaatatcagctgt 340
           |||||||||||||||||| ||||| ||||| ||||||||||| | |||||||||||||||
Sbjct: 927 tttagctaactttgcttggcctttggcaaattcatggaatgcgaatccaatatcagctgt 868

                                                                       
Query: 341 tttctgctcttggaatcgtgcaagctcgtcgttcattacactaactatgtgctcgtacct 400
           ||||||||||||||| ||||||||||| || ||||||||   ||||||||||||  ||||
Sbjct: 867 tttctgctcttggaaacgtgcaagctcttcattcattactgcaactatgtgctcaaacct 808

                                         
Query: 401 cttcgtagcctcctcactggctgctttcaa 430
           ||| ||||||||||||||| ||||| ||||
Sbjct: 807 ctttgtagcctcctcactgtctgctgtcaa 778



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                               
Query: 574 tttattgactgcacagcacgcacataatctttcaaa 609
           |||||||||||||||||||| |||||||||||||||
Sbjct: 776 tttattgactgcacagcacgtacataatctttcaaa 741
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>gb|AF162682.1|AF162682 Zea mays mutant sh2-7527 alien mRNA sequence
          Length = 1210

 Score =  224 bits (113), Expect = 3e-55
 Identities = 186/209 (88%), Gaps = 1/209 (0%)
 Strand = Plus / Minus

                                                                        
Query: 400  tcttcgtagcctcctcactggctgctttcaactcactgaactcagtttctgactcggaaa 459
            |||| ||||||||||||||| ||||||||||||| || ||||||| |||||  |||| | 
Sbjct: 1066 tctttgtagcctcctcactgtctgctttcaactctctaaactcagattctgcttcggcat 1007

                                                                        
Query: 460  acttctcagggttcatgaacttcattttttcaaggttaagctctttatacttcctctcct 519
            |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 1006 acttctcagggttcatgaacttcaatttttcaagattaagctctttatacttcctctcct 947

                                                                        
Query: 520  ggtccaagtcaaagtgctgcctgaaagcattggctcgatcaagacatagtggcctttatt 579
            | ||||| ||||||||||| ||||||||||| |||||||| || ||||||||| ||||| 
Sbjct: 946  gatccaaatcaaagtgctgtctgaaagcattagctcgatccag-catagtggcttttata 888

                                         
Query: 580  gactgcacagcacgcacataatctttcaa 608
            || || | ||||| |||||||||||||||
Sbjct: 887  gattgtagagcacacacataatctttcaa 859
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>gb|AF293457.1|AF293457S1 Zea mays truncated insertion sequence VADER mutant shrunken-2 (sh2)
            pseudogene, complete sequence
          Length = 6873

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 73/80 (91%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                        
Query: 495  ttaagctctttatacttcctctcctggtccaagtcaaagtgctgcctgaaagcattggct 554
            |||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||| |||
Sbjct: 5892 ttaagctctttatacttcctctcctgatccaaatcaaagcgctgtctgaaagcattagct 5833

                                
Query: 555  cgatcaagacatagtggcct 574
            ||||| || |||||||||||
Sbjct: 5832 cgatccag-catagtggcct 5814



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 438  aactcagtttctgactcggaaaacttctcagggttcatgaacttcattttttca 491
            ||||||| |||||  |||| | |||||||||||||||||||||||| |||||||
Sbjct: 6152 aactcagattctgcttcggcatacttctcagggttcatgaacttcaatttttca 6099



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 400  tcttcgtagcctcctcactggctgctttcaact 432
            |||| ||||||||||||||| ||||||||||||
Sbjct: 6288 tctttgtagcctcctcactgtctgctttcaact 6256
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>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 282     ttagctaactttgcttgaccttt 304
               |||||||||||||||||||||||
Sbjct: 2454598 ttagctaactttgcttgaccttt 2454620
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>emb|AL732395.9| Human DNA sequence from clone RP11-77F5 on chromosome 10 Contains the
             3' end of the gene for uncharacterized hematopoietic
             stem/progenitor cells (MDS026), complete sequence
          Length = 54050

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 521   gtccaagtcaaagtgctgcctg 542
             ||||||||||||||||||||||
Sbjct: 23668 gtccaagtcaaagtgctgcctg 23647
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>ref|NM_120696.2| Arabidopsis thaliana unknown protein AT5G06140 mRNA, complete cds
          Length = 1427

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 294  gcttgacctttcgcaaactcatggaatgc 322
            ||||| ||||||||||||| |||||||||
Sbjct: 1150 gcttgtcctttcgcaaactgatggaatgc 1122
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>ref|XM_509473.1| PREDICTED: Pan troglodytes similar to CG1842-PA (LOC452356), mRNA
          Length = 1611

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 509 cttcctctcctggtccaagtcaaag 533
           ||||||| |||||||||||||||||
Sbjct: 621 cttcctcacctggtccaagtcaaag 597
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>ref|XM_424703.1| PREDICTED: Gallus gallus similar to ankyrin repeat domain 32
            (LOC427111), mRNA
          Length = 3478

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 523  ccaagtcaaagtgctgcctga 543
            |||||||||||||||||||||
Sbjct: 1986 ccaagtcaaagtgctgcctga 2006
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>ref|XM_425390.1| PREDICTED: Gallus gallus similar to Williams Beuren syndrome
            chromosome region 14 isoform alpha; WS
            basic-helix-loop-helix leucine zipper protein
            (LOC427818), mRNA
          Length = 1806

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 521  gtccaagtcaaagtgctgcct 541
            |||||||||||||||||||||
Sbjct: 1227 gtccaagtcaaagtgctgcct 1207
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>emb|CR387978.12| Zebrafish DNA sequence from clone DKEY-33M5 in linkage group 1,
             complete sequence
          Length = 208746

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 151   ctggaaaaaatcagcctaaaactca 175
             |||||| ||||||||||||||||||
Sbjct: 36433 ctggaataaatcagcctaaaactca 36457
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>gb|AC091091.2| Gallus gallus clone WAG-93J15, complete sequence
          Length = 136822

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 521   gtccaagtcaaagtgctgcct 541
             |||||||||||||||||||||
Sbjct: 18004 gtccaagtcaaagtgctgcct 18024
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>gb|AY080809.1| Arabidopsis thaliana putative sorting nexin protein (At5g06140)
           mRNA, partial cds
          Length = 908

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 294 gcttgacctttcgcaaactcatggaatgc 322
           ||||| ||||||||||||| |||||||||
Sbjct: 631 gcttgtcctttcgcaaactgatggaatgc 603
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>dbj|AK091526.1| Homo sapiens cDNA FLJ34207 fis, clone FCBBF3020163, moderately
            similar to Chlamydomonas reinhardtii dhc1 gene for
            1-alpha dynein heavy chain
          Length = 2797

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 509  cttcctctcctggtccaagtcaaag 533
            ||||||| |||||||||||||||||
Sbjct: 1811 cttcctcacctggtccaagtcaaag 1787
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>emb|CR407078.1| Gallus gallus finished cDNA, clone ChEST749e9
          Length = 1649

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 523 ccaagtcaaagtgctgcctga 543
           |||||||||||||||||||||
Sbjct: 156 ccaagtcaaagtgctgcctga 176
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>dbj|AB095937.2| Homo sapiens mRNA for KIAA2017 protein, partial cds
          Length = 9388

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 509  cttcctctcctggtccaagtcaaag 533
            ||||||| |||||||||||||||||
Sbjct: 8406 cttcctcacctggtccaagtcaaag 8382
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>gb|AC079315.30| Homo sapiens 12 BAC RP11-380L11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 121450

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 509    cttcctctcctggtccaagtcaaag 533
              ||||||| |||||||||||||||||
Sbjct: 107235 cttcctcacctggtccaagtcaaag 107211
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>emb|BX830901.1|CNS0A0TB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS38ZC11 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1384

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 294  gcttgacctttcgcaaactcatggaatgc 322
            ||||| ||||||||||||| |||||||||
Sbjct: 1150 gcttgtcctttcgcaaactgatggaatgc 1122
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>gb|AC023090.12| Homo sapiens chromosome 18, clone RP11-800A18, complete sequence
          Length = 180016

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 410   ctcctcactggctgctttcaa 430
             |||||||||||||||||||||
Sbjct: 59796 ctcctcactggctgctttcaa 59816
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>dbj|AP002544.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBL20
          Length = 35301

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 294 gcttgacctttcgcaaactcatggaatgc 322
           ||||| ||||||||||||| |||||||||
Sbjct: 54  gcttgtcctttcgcaaactgatggaatgc 82
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>gb|CP000027.1| Dehalococcoides ethenogenes 195, complete genome
          Length = 1469720

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    ttgggctggaaaaaatcagc 165
              ||||||||||||||||||||
Sbjct: 166916 ttgggctggaaaaaatcagc 166935
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>gb|AC102638.13| Mus musculus chromosome 3, clone RP23-406D2, complete sequence
          Length = 172817

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 313    catggaatgcaagtccaata 332
              ||||||||||||||||||||
Sbjct: 125163 catggaatgcaagtccaata 125182
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>gb|AC162373.11| Mus musculus chromosome 18, clone RP23-410M11, complete sequence
          Length = 173382

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   gaaaaaatcagcctaaaact 173
             ||||||||||||||||||||
Sbjct: 52903 gaaaaaatcagcctaaaact 52922
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>ref|NM_175354.2| Mus musculus RIKEN cDNA C030016D13 gene (C030016D13Rik), mRNA
          Length = 2537

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 335 agctgttttctgctcttgga 354
           ||||||||||||||||||||
Sbjct: 461 agctgttttctgctcttgga 480
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>gb|AC132595.3| Mus musculus BAC clone RP24-229G7 from chromosome 7, complete sequence
          Length = 155547

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 581   actgcacagcacgcacataa 600
             ||||||||||||||||||||
Sbjct: 37142 actgcacagcacgcacataa 37161
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>gb|AC102361.13| Mus musculus chromosome 18, clone RP23-37I2, complete sequence
          Length = 213628

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   gaaaaaatcagcctaaaact 173
             ||||||||||||||||||||
Sbjct: 11987 gaaaaaatcagcctaaaact 11968
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>gb|AY326102.1| Peromyscus maniculatus interphotoreceptor retinoid-binding protein
           (IRBP) gene, partial cds
          Length = 1233

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 399 ctcttcgtagcctcctcactggctgctt 426
           ||||||||||||| |||| |||||||||
Sbjct: 41  ctcttcgtagcctgctcaatggctgctt 14
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>gb|AC025540.7| Homo sapiens BAC clone RP11-295N22 from 7, complete sequence
          Length = 160896

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 500   ctctttatacttcctctcct 519
             ||||||||||||||||||||
Sbjct: 27304 ctctttatacttcctctcct 27285
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>gb|AC004485.2| Homo sapiens BAC clone CTB-118E13 from 7, complete sequence
          Length = 185516

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 493    ggttaagctctttatacttc 512
              ||||||||||||||||||||
Sbjct: 183632 ggttaagctctttatacttc 183613
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>gb|AC165968.3| Mus musculus BAC clone RP23-181K4 from chromosome 7, complete
            sequence
          Length = 190840

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 581  actgcacagcacgcacataa 600
            ||||||||||||||||||||
Sbjct: 6292 actgcacagcacgcacataa 6311
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>gb|AC142353.1| Pan troglodytes BAC clone RP43-21M1 from 7, complete sequence
          Length = 182634

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 493   ggttaagctctttatacttc 512
             ||||||||||||||||||||
Sbjct: 56194 ggttaagctctttatacttc 56213
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>gb|AC124973.8| Mus musculus strain C57BL/6J clone rp23-329l13 map 19, complete
             sequence
          Length = 199006

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   agctgttttctgctcttgga 354
             ||||||||||||||||||||
Sbjct: 27657 agctgttttctgctcttgga 27638
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>emb|AL359770.12| Human DNA sequence from clone RP11-286B9 on chromosome 13, complete
             sequence
          Length = 104638

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 476   gaacttcattttttcaaggt 495
             ||||||||||||||||||||
Sbjct: 21791 gaacttcattttttcaaggt 21810
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>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence
          Length = 1089401

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     tgagttacagagtacacact 62
              ||||||||||||||||||||
Sbjct: 418762 tgagttacagagtacacact 418781
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>gb|DQ191517.1| Petromyscus collinus interphotoreceptor retinoid-binding protein
           (IRBP) gene, partial cds
          Length = 1233

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 399 ctcttcgtagcctcctcactggctgctt 426
           ||||||||||||| |||| |||||||||
Sbjct: 41  ctcttcgtagcctgctcaatggctgctt 14
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>gb|AC008929.3| Homo sapiens chromosome 5, complete sequence
          Length = 125403

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    aaagatgtcaatataacaac 95
             ||||||||||||||||||||
Sbjct: 35452 aaagatgtcaatataacaac 35471
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>gb|AC159823.2| Mus musculus BAC clone RP23-113F14 from chromosome 12, complete sequence
          Length = 212532

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 158    aaatcagcctaaaactcaaa 177
              ||||||||||||||||||||
Sbjct: 186388 aaatcagcctaaaactcaaa 186369
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>gb|AC159274.2| Mus musculus BAC clone RP23-405C6 from chromosome 12, complete sequence
          Length = 200974

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   aaatcagcctaaaactcaaa 177
             ||||||||||||||||||||
Sbjct: 46465 aaatcagcctaaaactcaaa 46446
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>gb|AC027347.5|AC027347 Homo sapiens chromosome 5 clone CTD-2562I21, complete sequence
          Length = 148193

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    aaagatgtcaatataacaac 95
             ||||||||||||||||||||
Sbjct: 49111 aaagatgtcaatataacaac 49092
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>dbj|AK047713.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length
           enriched library, clone:C030016D13 product:hypothetical
           protein, full insert sequence
          Length = 2537

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 335 agctgttttctgctcttgga 354
           ||||||||||||||||||||
Sbjct: 461 agctgttttctgctcttgga 480
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 104    tgtcaaccatcacttttcaagtat 127
              |||||| |||||||||||||||||
Sbjct: 525965 tgtcaaacatcacttttcaagtat 525988
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>gb|BC094907.1| Mus musculus cDNA clone IMAGE:30021652
          Length = 2610

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 335 agctgttttctgctcttgga 354
           ||||||||||||||||||||
Sbjct: 495 agctgttttctgctcttgga 514
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>gb|AC153497.8| Mus musculus 10 BAC RP23-226H21 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 179741

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 99    agcattgtcaaccatcacttttca 122
             ||||||||||||||||| ||||||
Sbjct: 10505 agcattgtcaaccatcatttttca 10482
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>gb|AC147298.4| Pan troglodytes BAC clone RP43-58G7 from chromosome 7, complete
             sequence
          Length = 228916

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 493   ggttaagctctttatacttc 512
             ||||||||||||||||||||
Sbjct: 75617 ggttaagctctttatacttc 75598
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>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0007D08
          Length = 183142

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 104    tgtcaaccatcacttttcaagtat 127
              |||||| |||||||||||||||||
Sbjct: 115925 tgtcaaacatcacttttcaagtat 115948
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>gb|AC153825.7| Mus musculus 10 BAC RP23-70B19 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 279677

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 99     agcattgtcaaccatcacttttca 122
              ||||||||||||||||| ||||||
Sbjct: 188434 agcattgtcaaccatcatttttca 188411
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>gb|AC148973.4| Mus musculus BAC clone RP24-117C3 from 7, complete sequence
          Length = 197165

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 581  actgcacagcacgcacataa 600
            ||||||||||||||||||||
Sbjct: 7250 actgcacagcacgcacataa 7231


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,658,800
Number of Sequences: 3902068
Number of extensions: 5658800
Number of successful extensions: 114206
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114018
Number of HSP's gapped (non-prelim): 185
length of query: 609
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 586
effective length of database: 17,143,297,704
effective search space: 10045972454544
effective search space used: 10045972454544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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