ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19c15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK120353.1| Oryza sativa (japonica cultivar-group) cDNA clon... 349 7e-93
2dbj|AK102304.1| Oryza sativa (japonica cultivar-group) cDNA clon... 349 7e-93
3gb|AF162682.1|AF162682 Zea mays mutant sh2-7527 alien mRNA sequence 256 8e-65
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 246 8e-62
5dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic D... 246 8e-62
6dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic D... 246 8e-62
7ref|NM_190716.1| Oryza sativa (japonica cultivar-group), predic... 242 1e-60
8gb|AF293457.1|AF293457S1 Zea mays truncated insertion sequence V... 109 1e-20
9gb|AE016830.1| Enterococcus faecalis V583, complete genome 46 0.14
10emb|AL732395.9| Human DNA sequence from clone RP11-77F5 on chrom... 44 0.57
11ref|NM_120696.2| Arabidopsis thaliana unknown protein AT5G06140 ... 42 2.2
12ref|XM_509473.1| PREDICTED: Pan troglodytes similar to CG1842-PA... 42 2.2
13ref|XM_424703.1| PREDICTED: Gallus gallus similar to ankyrin rep... 42 2.2
14ref|XM_425390.1| PREDICTED: Gallus gallus similar to Williams Be... 42 2.2
15emb|CR387978.12| Zebrafish DNA sequence from clone DKEY-33M5 in ... 42 2.2
16gb|AC091091.2| Gallus gallus clone WAG-93J15, complete sequence 42 2.2
17gb|AY080809.1| Arabidopsis thaliana putative sorting nexin prote... 42 2.2
18dbj|AK091526.1| Homo sapiens cDNA FLJ34207 fis, clone FCBBF30201... 42 2.2
19emb|CR407078.1| Gallus gallus finished cDNA, clone ChEST749e9 42 2.2
20dbj|AB095937.2| Homo sapiens mRNA for KIAA2017 protein, partial cds 42 2.2
21gb|AC079315.30| Homo sapiens 12 BAC RP11-380L11 (Roswell Park Ca... 42 2.2
22emb|BX830901.1|CNS0A0TB Arabidopsis thaliana Full-length cDNA Co... 42 2.2
23gb|AC023090.12| Homo sapiens chromosome 18, clone RP11-800A18, c... 42 2.2
24dbj|AP002544.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 2.2
25gb|CP000027.1| Dehalococcoides ethenogenes 195, complete genome 40 8.8
26gb|AC102638.13| Mus musculus chromosome 3, clone RP23-406D2, com... 40 8.8
27gb|AC162373.11| Mus musculus chromosome 18, clone RP23-410M11, c... 40 8.8
28ref|NM_175354.2| Mus musculus RIKEN cDNA C030016D13 gene (C03001... 40 8.8
29gb|AC132595.3| Mus musculus BAC clone RP24-229G7 from chromosome... 40 8.8
30gb|AC102361.13| Mus musculus chromosome 18, clone RP23-37I2, com... 40 8.8
31gb|AY326102.1| Peromyscus maniculatus interphotoreceptor retinoi... 40 8.8
32gb|AC025540.7| Homo sapiens BAC clone RP11-295N22 from 7, comple... 40 8.8
33gb|AC004485.2| Homo sapiens BAC clone CTB-118E13 from 7, complet... 40 8.8
34gb|AC165968.3| Mus musculus BAC clone RP23-181K4 from chromosome... 40 8.8
35gb|AC142353.1| Pan troglodytes BAC clone RP43-21M1 from 7, compl... 40 8.8
36gb|AC124973.8| Mus musculus strain C57BL/6J clone rp23-329l13 ma... 40 8.8
37emb|AL359770.12| Human DNA sequence from clone RP11-286B9 on chr... 40 8.8
38emb|CR380955.1| Candida glabrata strain CBS138 chromosome I comp... 40 8.8
39gb|DQ191517.1| Petromyscus collinus interphotoreceptor retinoid-... 40 8.8
40gb|AC008929.3| Homo sapiens chromosome 5, complete sequence 40 8.8
41gb|AC159823.2| Mus musculus BAC clone RP23-113F14 from chromosom... 40 8.8
42gb|AC159274.2| Mus musculus BAC clone RP23-405C6 from chromosome... 40 8.8
43gb|AC027347.5|AC027347 Homo sapiens chromosome 5 clone CTD-2562I... 40 8.8
44dbj|AK047713.1| Mus musculus adult male corpus striatum cDNA, RI... 40 8.8
45dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
46gb|BC094907.1| Mus musculus cDNA clone IMAGE:30021652 40 8.8
47gb|AC153497.8| Mus musculus 10 BAC RP23-226H21 (Roswell Park Can... 40 8.8
48gb|AC147298.4| Pan troglodytes BAC clone RP43-58G7 from chromoso... 40 8.8
49dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
50gb|AC153825.7| Mus musculus 10 BAC RP23-70B19 (Roswell Park Canc... 40 8.8
51gb|AC148973.4| Mus musculus BAC clone RP24-117C3 from 7, complet... 40 8.8
52emb|CR925745.5| Zebrafish DNA sequence from clone DKEYP-100G5 in... 40 8.8
53emb|AL352979.4|CNS05TBZ Human chromosome 14 DNA sequence BAC R-3... 40 8.8 
>dbj|AK120353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066C10, full
            insert sequence
          Length = 1652

 Score =  349 bits (176), Expect = 7e-93
 Identities = 347/404 (85%)
 Strand = Plus / Minus

                                                                        
Query: 244  ttatgaagcggaacaggcttctagctttgggaggacgctgcgccacgcatcagcaatgtc 303
            |||||||| |||||||||||| ||||||||||||||||  ||||| ||||||||||| ||
Sbjct: 1394 ttatgaagtggaacaggcttcgagctttgggaggacgcctcgccatgcatcagcaatatc 1335

                                                                        
Query: 304  tttagctaactttgcttgacctttcgcaaactcatggaatgcaagtccaatatcagctgt 363
            |||||||||||||||||| ||||| ||||| ||||||||||| | |||||||||||||||
Sbjct: 1334 tttagctaactttgcttggcctttggcaaattcatggaatgcgaatccaatatcagctgt 1275

                                                                        
Query: 364  tttctgctcttggaatcgtgcaagctcgtcgttcattacactaactatgtgctcgtacct 423
            ||||||||||||||| ||||||||||| || ||||||||   ||||||||||||  ||||
Sbjct: 1274 tttctgctcttggaaacgtgcaagctcttcattcattactgcaactatgtgctcaaacct 1215

                                                                        
Query: 424  cttcgtagcctcctcactggctgctttcaactcactgaactcagtttctgactcggaaaa 483
            ||| ||||||||||||||| ||||| ||||||| | || ||||| ||||   || |||||
Sbjct: 1214 ctttgtagcctcctcactgtctgctgtcaactctcggacctcagcttctagttcagaaaa 1155

                                                                        
Query: 484  cttctcagggttcatgaacttcattttttcaaggttaagctctttatacttcctctcctg 543
             || |||||||||| |||||||| |||||| || |||| | ||||||| | | ||| |||
Sbjct: 1154 tttatcagggttcacgaacttcaatttttcgagattaacccctttatattccttctgctg 1095

                                                                        
Query: 544  gtccaagtcaaagtgctgcctgaaagcattggctcgatcaagcatagtggcctttattga 603
                || |||   |||||||||||||||||||||||||| | |||||| || ||||||||
Sbjct: 1094 aaataaatcatgatgctgcctgaaagcattggctcgatccaccatagttgcttttattga 1035

                                                        
Query: 604  ctgcacagcacgcacataatctttcaaaggttcttcaaaattaa 647
            |||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct: 1034 ctgcacagcacgtacataatctttcaaaggctcttcaaagttaa 991
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>dbj|AK102304.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089O16, full
            insert sequence
          Length = 1610

 Score =  349 bits (176), Expect = 7e-93
 Identities = 347/404 (85%)
 Strand = Plus / Minus

                                                                        
Query: 244  ttatgaagcggaacaggcttctagctttgggaggacgctgcgccacgcatcagcaatgtc 303
            |||||||| |||||||||||| ||||||||||||||||  ||||| ||||||||||| ||
Sbjct: 1358 ttatgaagtggaacaggcttcgagctttgggaggacgcctcgccatgcatcagcaatatc 1299

                                                                        
Query: 304  tttagctaactttgcttgacctttcgcaaactcatggaatgcaagtccaatatcagctgt 363
            |||||||||||||||||| ||||| ||||| ||||||||||| | |||||||||||||||
Sbjct: 1298 tttagctaactttgcttggcctttggcaaattcatggaatgcgaatccaatatcagctgt 1239

                                                                        
Query: 364  tttctgctcttggaatcgtgcaagctcgtcgttcattacactaactatgtgctcgtacct 423
            ||||||||||||||| ||||||||||| || ||||||||   ||||||||||||  ||||
Sbjct: 1238 tttctgctcttggaaacgtgcaagctcttcattcattactgcaactatgtgctcaaacct 1179

                                                                        
Query: 424  cttcgtagcctcctcactggctgctttcaactcactgaactcagtttctgactcggaaaa 483
            ||| ||||||||||||||| ||||| ||||||| | || ||||| ||||   || |||||
Sbjct: 1178 ctttgtagcctcctcactgtctgctgtcaactctcggacctcagcttctagttcagaaaa 1119

                                                                        
Query: 484  cttctcagggttcatgaacttcattttttcaaggttaagctctttatacttcctctcctg 543
             || |||||||||| |||||||| |||||| || |||| | ||||||| | | ||| |||
Sbjct: 1118 tttatcagggttcacgaacttcaatttttcgagattaacccctttatattccttctgctg 1059

                                                                        
Query: 544  gtccaagtcaaagtgctgcctgaaagcattggctcgatcaagcatagtggcctttattga 603
                || |||   |||||||||||||||||||||||||| | |||||| || ||||||||
Sbjct: 1058 aaataaatcatgatgctgcctgaaagcattggctcgatccaccatagttgcttttattga 999

                                                        
Query: 604  ctgcacagcacgcacataatctttcaaaggttcttcaaaattaa 647
            |||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct: 998  ctgcacagcacgtacataatctttcaaaggctcttcaaagttaa 955
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>gb|AF162682.1|AF162682 Zea mays mutant sh2-7527 alien mRNA sequence
          Length = 1210

 Score =  256 bits (129), Expect = 8e-65
 Identities = 201/225 (89%)
 Strand = Plus / Minus

                                                                        
Query: 423  tcttcgtagcctcctcactggctgctttcaactcactgaactcagtttctgactcggaaa 482
            |||| ||||||||||||||| ||||||||||||| || ||||||| |||||  |||| | 
Sbjct: 1066 tctttgtagcctcctcactgtctgctttcaactctctaaactcagattctgcttcggcat 1007

                                                                        
Query: 483  acttctcagggttcatgaacttcattttttcaaggttaagctctttatacttcctctcct 542
            |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 1006 acttctcagggttcatgaacttcaatttttcaagattaagctctttatacttcctctcct 947

                                                                        
Query: 543  ggtccaagtcaaagtgctgcctgaaagcattggctcgatcaagcatagtggcctttattg 602
            | ||||| ||||||||||| ||||||||||| |||||||| ||||||||||| ||||| |
Sbjct: 946  gatccaaatcaaagtgctgtctgaaagcattagctcgatccagcatagtggcttttatag 887

                                                         
Query: 603  actgcacagcacgcacataatctttcaaaggttcttcaaaattaa 647
            | || | ||||| ||||||||||||||| ||||||||||| ||||
Sbjct: 886  attgtagagcacacacataatctttcaagggttcttcaaagttaa 842
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  246 bits (124), Expect = 8e-62
 Identities = 190/212 (89%)
 Strand = Plus / Plus

                                                                            
Query: 244      ttatgaagcggaacaggcttctagctttgggaggacgctgcgccacgcatcagcaatgtc 303
                |||||||| |||||||||||| ||||||||||||||||  ||||| ||||||||||| ||
Sbjct: 37309737 ttatgaagtggaacaggcttcgagctttgggaggacgcctcgccatgcatcagcaatatc 37309796

                                                                            
Query: 304      tttagctaactttgcttgacctttcgcaaactcatggaatgcaagtccaatatcagctgt 363
                |||||||||||||||||| ||||| ||||| ||||||||||| | |||||||||||||||
Sbjct: 37309797 tttagctaactttgcttggcctttggcaaattcatggaatgcgaatccaatatcagctgt 37309856

                                                                            
Query: 364      tttctgctcttggaatcgtgcaagctcgtcgttcattacactaactatgtgctcgtacct 423
                ||||||||||||||| ||||||||||| || ||||||||   ||||||||||||  ||||
Sbjct: 37309857 tttctgctcttggaaacgtgcaagctcttcattcattactgcaactatgtgctcaaacct 37309916

                                                
Query: 424      cttcgtagcctcctcactggctgctttcaact 455
                ||| ||||||||||||||| ||||| ||||||
Sbjct: 37309917 ctttgtagcctcctcactgtctgctgtcaact 37309948



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 49/52 (94%)
 Strand = Plus / Plus

                                                                    
Query: 596      tttattgactgcacagcacgcacataatctttcaaaggttcttcaaaattaa 647
                |||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct: 37310539 tttattgactgcacagcacgtacataatctttcaaaggctcttcaaagttaa 37310590



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                        
Query: 557      tgctgcctgaaagcattggctcgatcaagcatagtggcct 596
                |||||||||||||||||||||||||| | |||||| ||||
Sbjct: 37310390 tgctgcctgaaagcattggctcgatccaccatagttgcct 37310429
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>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0423B08
          Length = 151490

 Score =  246 bits (124), Expect = 8e-62
 Identities = 190/212 (89%)
 Strand = Plus / Plus

                                                                         
Query: 244   ttatgaagcggaacaggcttctagctttgggaggacgctgcgccacgcatcagcaatgtc 303
             |||||||| |||||||||||| ||||||||||||||||  ||||| ||||||||||| ||
Sbjct: 21771 ttatgaagtggaacaggcttcgagctttgggaggacgcctcgccatgcatcagcaatatc 21830

                                                                         
Query: 304   tttagctaactttgcttgacctttcgcaaactcatggaatgcaagtccaatatcagctgt 363
             |||||||||||||||||| ||||| ||||| ||||||||||| | |||||||||||||||
Sbjct: 21831 tttagctaactttgcttggcctttggcaaattcatggaatgcgaatccaatatcagctgt 21890

                                                                         
Query: 364   tttctgctcttggaatcgtgcaagctcgtcgttcattacactaactatgtgctcgtacct 423
             ||||||||||||||| ||||||||||| || ||||||||   ||||||||||||  ||||
Sbjct: 21891 tttctgctcttggaaacgtgcaagctcttcattcattactgcaactatgtgctcaaacct 21950

                                             
Query: 424   cttcgtagcctcctcactggctgctttcaact 455
             ||| ||||||||||||||| ||||| ||||||
Sbjct: 21951 ctttgtagcctcctcactgtctgctgtcaact 21982



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 49/52 (94%)
 Strand = Plus / Plus

                                                                 
Query: 596   tttattgactgcacagcacgcacataatctttcaaaggttcttcaaaattaa 647
             |||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct: 22573 tttattgactgcacagcacgtacataatctttcaaaggctcttcaaagttaa 22624



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 557   tgctgcctgaaagcattggctcgatcaagcatagtggcct 596
             |||||||||||||||||||||||||| | |||||| ||||
Sbjct: 22424 tgctgcctgaaagcattggctcgatccaccatagttgcct 22463
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>dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0679C12
          Length = 153666

 Score =  246 bits (124), Expect = 8e-62
 Identities = 190/212 (89%)
 Strand = Plus / Plus

                                                                          
Query: 244    ttatgaagcggaacaggcttctagctttgggaggacgctgcgccacgcatcagcaatgtc 303
              |||||||| |||||||||||| ||||||||||||||||  ||||| ||||||||||| ||
Sbjct: 146726 ttatgaagtggaacaggcttcgagctttgggaggacgcctcgccatgcatcagcaatatc 146785

                                                                          
Query: 304    tttagctaactttgcttgacctttcgcaaactcatggaatgcaagtccaatatcagctgt 363
              |||||||||||||||||| ||||| ||||| ||||||||||| | |||||||||||||||
Sbjct: 146786 tttagctaactttgcttggcctttggcaaattcatggaatgcgaatccaatatcagctgt 146845

                                                                          
Query: 364    tttctgctcttggaatcgtgcaagctcgtcgttcattacactaactatgtgctcgtacct 423
              ||||||||||||||| ||||||||||| || ||||||||   ||||||||||||  ||||
Sbjct: 146846 tttctgctcttggaaacgtgcaagctcttcattcattactgcaactatgtgctcaaacct 146905

                                              
Query: 424    cttcgtagcctcctcactggctgctttcaact 455
              ||| ||||||||||||||| ||||| ||||||
Sbjct: 146906 ctttgtagcctcctcactgtctgctgtcaact 146937



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 49/52 (94%)
 Strand = Plus / Plus

                                                                  
Query: 596    tttattgactgcacagcacgcacataatctttcaaaggttcttcaaaattaa 647
              |||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct: 147528 tttattgactgcacagcacgtacataatctttcaaaggctcttcaaagttaa 147579



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                      
Query: 557    tgctgcctgaaagcattggctcgatcaagcatagtggcct 596
              |||||||||||||||||||||||||| | |||||| ||||
Sbjct: 147379 tgctgcctgaaagcattggctcgatccaccatagttgcct 147418
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>ref|NM_190716.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 987

 Score =  242 bits (122), Expect = 1e-60
 Identities = 188/210 (89%)
 Strand = Plus / Minus

                                                                       
Query: 244 ttatgaagcggaacaggcttctagctttgggaggacgctgcgccacgcatcagcaatgtc 303
           |||||||| |||||||||||| ||||||||||||||||  ||||| ||||||||||| ||
Sbjct: 987 ttatgaagtggaacaggcttcgagctttgggaggacgcctcgccatgcatcagcaatatc 928

                                                                       
Query: 304 tttagctaactttgcttgacctttcgcaaactcatggaatgcaagtccaatatcagctgt 363
           |||||||||||||||||| ||||| ||||| ||||||||||| | |||||||||||||||
Sbjct: 927 tttagctaactttgcttggcctttggcaaattcatggaatgcgaatccaatatcagctgt 868

                                                                       
Query: 364 tttctgctcttggaatcgtgcaagctcgtcgttcattacactaactatgtgctcgtacct 423
           ||||||||||||||| ||||||||||| || ||||||||   ||||||||||||  ||||
Sbjct: 867 tttctgctcttggaaacgtgcaagctcttcattcattactgcaactatgtgctcaaacct 808

                                         
Query: 424 cttcgtagcctcctcactggctgctttcaa 453
           ||| ||||||||||||||| ||||| ||||
Sbjct: 807 ctttgtagcctcctcactgtctgctgtcaa 778



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 49/52 (94%)
 Strand = Plus / Minus

                                                               
Query: 596 tttattgactgcacagcacgcacataatctttcaaaggttcttcaaaattaa 647
           |||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct: 776 tttattgactgcacagcacgtacataatctttcaaaggctcttcaaagttaa 725
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>gb|AF293457.1|AF293457S1 Zea mays truncated insertion sequence VADER mutant shrunken-2 (sh2)
            pseudogene, complete sequence
          Length = 6873

 Score =  109 bits (55), Expect = 1e-20
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                        
Query: 518  ttaagctctttatacttcctctcctggtccaagtcaaagtgctgcctgaaagcattggct 577
            |||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||| |||
Sbjct: 5892 ttaagctctttatacttcctctcctgatccaaatcaaagcgctgtctgaaagcattagct 5833

                               
Query: 578  cgatcaagcatagtggcct 596
            ||||| |||||||||||||
Sbjct: 5832 cgatccagcatagtggcct 5814



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 461  aactcagtttctgactcggaaaacttctcagggttcatgaacttcattttttca 514
            ||||||| |||||  |||| | |||||||||||||||||||||||| |||||||
Sbjct: 6152 aactcagattctgcttcggcatacttctcagggttcatgaacttcaatttttca 6099



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 610  agcacgcacataatctttcaaaggttcttcaaaattaa 647
            ||||| ||||||||||||||| ||||||||||| ||||
Sbjct: 5712 agcacacacataatctttcaagggttcttcaaagttaa 5675



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 423  tcttcgtagcctcctcactggctgctttcaact 455
            |||| ||||||||||||||| ||||||||||||
Sbjct: 6288 tctttgtagcctcctcactgtctgctttcaact 6256
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>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 305     ttagctaactttgcttgaccttt 327
               |||||||||||||||||||||||
Sbjct: 2454598 ttagctaactttgcttgaccttt 2454620
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>emb|AL732395.9| Human DNA sequence from clone RP11-77F5 on chromosome 10 Contains the
             3' end of the gene for uncharacterized hematopoietic
             stem/progenitor cells (MDS026), complete sequence
          Length = 54050

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 544   gtccaagtcaaagtgctgcctg 565
             ||||||||||||||||||||||
Sbjct: 23668 gtccaagtcaaagtgctgcctg 23647
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>ref|NM_120696.2| Arabidopsis thaliana unknown protein AT5G06140 mRNA, complete cds
          Length = 1427

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 317  gcttgacctttcgcaaactcatggaatgc 345
            ||||| ||||||||||||| |||||||||
Sbjct: 1150 gcttgtcctttcgcaaactgatggaatgc 1122
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>ref|XM_509473.1| PREDICTED: Pan troglodytes similar to CG1842-PA (LOC452356), mRNA
          Length = 1611

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 532 cttcctctcctggtccaagtcaaag 556
           ||||||| |||||||||||||||||
Sbjct: 621 cttcctcacctggtccaagtcaaag 597
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>ref|XM_424703.1| PREDICTED: Gallus gallus similar to ankyrin repeat domain 32
            (LOC427111), mRNA
          Length = 3478

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 546  ccaagtcaaagtgctgcctga 566
            |||||||||||||||||||||
Sbjct: 1986 ccaagtcaaagtgctgcctga 2006
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>ref|XM_425390.1| PREDICTED: Gallus gallus similar to Williams Beuren syndrome
            chromosome region 14 isoform alpha; WS
            basic-helix-loop-helix leucine zipper protein
            (LOC427818), mRNA
          Length = 1806

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 544  gtccaagtcaaagtgctgcct 564
            |||||||||||||||||||||
Sbjct: 1227 gtccaagtcaaagtgctgcct 1207
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>emb|CR387978.12| Zebrafish DNA sequence from clone DKEY-33M5 in linkage group 1,
             complete sequence
          Length = 208746

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 174   ctggaaaaaatcagcctaaaactca 198
             |||||| ||||||||||||||||||
Sbjct: 36433 ctggaataaatcagcctaaaactca 36457
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>gb|AC091091.2| Gallus gallus clone WAG-93J15, complete sequence
          Length = 136822

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 544   gtccaagtcaaagtgctgcct 564
             |||||||||||||||||||||
Sbjct: 18004 gtccaagtcaaagtgctgcct 18024
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>gb|AY080809.1| Arabidopsis thaliana putative sorting nexin protein (At5g06140)
           mRNA, partial cds
          Length = 908

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 317 gcttgacctttcgcaaactcatggaatgc 345
           ||||| ||||||||||||| |||||||||
Sbjct: 631 gcttgtcctttcgcaaactgatggaatgc 603
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>dbj|AK091526.1| Homo sapiens cDNA FLJ34207 fis, clone FCBBF3020163, moderately
            similar to Chlamydomonas reinhardtii dhc1 gene for
            1-alpha dynein heavy chain
          Length = 2797

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 532  cttcctctcctggtccaagtcaaag 556
            ||||||| |||||||||||||||||
Sbjct: 1811 cttcctcacctggtccaagtcaaag 1787
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>emb|CR407078.1| Gallus gallus finished cDNA, clone ChEST749e9
          Length = 1649

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 546 ccaagtcaaagtgctgcctga 566
           |||||||||||||||||||||
Sbjct: 156 ccaagtcaaagtgctgcctga 176
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>dbj|AB095937.2| Homo sapiens mRNA for KIAA2017 protein, partial cds
          Length = 9388

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 532  cttcctctcctggtccaagtcaaag 556
            ||||||| |||||||||||||||||
Sbjct: 8406 cttcctcacctggtccaagtcaaag 8382
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>gb|AC079315.30| Homo sapiens 12 BAC RP11-380L11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 121450

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 532    cttcctctcctggtccaagtcaaag 556
              ||||||| |||||||||||||||||
Sbjct: 107235 cttcctcacctggtccaagtcaaag 107211
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>emb|BX830901.1|CNS0A0TB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS38ZC11 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1384

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 317  gcttgacctttcgcaaactcatggaatgc 345
            ||||| ||||||||||||| |||||||||
Sbjct: 1150 gcttgtcctttcgcaaactgatggaatgc 1122
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>gb|AC023090.12| Homo sapiens chromosome 18, clone RP11-800A18, complete sequence
          Length = 180016

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 433   ctcctcactggctgctttcaa 453
             |||||||||||||||||||||
Sbjct: 59796 ctcctcactggctgctttcaa 59816
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>dbj|AP002544.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBL20
          Length = 35301

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 317 gcttgacctttcgcaaactcatggaatgc 345
           ||||| ||||||||||||| |||||||||
Sbjct: 54  gcttgtcctttcgcaaactgatggaatgc 82
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>gb|CP000027.1| Dehalococcoides ethenogenes 195, complete genome
          Length = 1469720

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    ttgggctggaaaaaatcagc 188
              ||||||||||||||||||||
Sbjct: 166916 ttgggctggaaaaaatcagc 166935
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>gb|AC102638.13| Mus musculus chromosome 3, clone RP23-406D2, complete sequence
          Length = 172817

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 336    catggaatgcaagtccaata 355
              ||||||||||||||||||||
Sbjct: 125163 catggaatgcaagtccaata 125182
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>gb|AC162373.11| Mus musculus chromosome 18, clone RP23-410M11, complete sequence
          Length = 173382

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   gaaaaaatcagcctaaaact 196
             ||||||||||||||||||||
Sbjct: 52903 gaaaaaatcagcctaaaact 52922
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>ref|NM_175354.2| Mus musculus RIKEN cDNA C030016D13 gene (C030016D13Rik), mRNA
          Length = 2537

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 358 agctgttttctgctcttgga 377
           ||||||||||||||||||||
Sbjct: 461 agctgttttctgctcttgga 480
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>gb|AC132595.3| Mus musculus BAC clone RP24-229G7 from chromosome 7, complete sequence
          Length = 155547

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 603   actgcacagcacgcacataa 622
             ||||||||||||||||||||
Sbjct: 37142 actgcacagcacgcacataa 37161
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>gb|AC102361.13| Mus musculus chromosome 18, clone RP23-37I2, complete sequence
          Length = 213628

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   gaaaaaatcagcctaaaact 196
             ||||||||||||||||||||
Sbjct: 11987 gaaaaaatcagcctaaaact 11968
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>gb|AY326102.1| Peromyscus maniculatus interphotoreceptor retinoid-binding protein
           (IRBP) gene, partial cds
          Length = 1233

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 422 ctcttcgtagcctcctcactggctgctt 449
           ||||||||||||| |||| |||||||||
Sbjct: 41  ctcttcgtagcctgctcaatggctgctt 14
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>gb|AC025540.7| Homo sapiens BAC clone RP11-295N22 from 7, complete sequence
          Length = 160896

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 523   ctctttatacttcctctcct 542
             ||||||||||||||||||||
Sbjct: 27304 ctctttatacttcctctcct 27285
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>gb|AC004485.2| Homo sapiens BAC clone CTB-118E13 from 7, complete sequence
          Length = 185516

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 516    ggttaagctctttatacttc 535
              ||||||||||||||||||||
Sbjct: 183632 ggttaagctctttatacttc 183613
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>gb|AC165968.3| Mus musculus BAC clone RP23-181K4 from chromosome 7, complete
            sequence
          Length = 190840

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 603  actgcacagcacgcacataa 622
            ||||||||||||||||||||
Sbjct: 6292 actgcacagcacgcacataa 6311
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>gb|AC142353.1| Pan troglodytes BAC clone RP43-21M1 from 7, complete sequence
          Length = 182634

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 516   ggttaagctctttatacttc 535
             ||||||||||||||||||||
Sbjct: 56194 ggttaagctctttatacttc 56213
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>gb|AC124973.8| Mus musculus strain C57BL/6J clone rp23-329l13 map 19, complete
             sequence
          Length = 199006

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 358   agctgttttctgctcttgga 377
             ||||||||||||||||||||
Sbjct: 27657 agctgttttctgctcttgga 27638
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>emb|AL359770.12| Human DNA sequence from clone RP11-286B9 on chromosome 13, complete
             sequence
          Length = 104638

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 499   gaacttcattttttcaaggt 518
             ||||||||||||||||||||
Sbjct: 21791 gaacttcattttttcaaggt 21810
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>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence
          Length = 1089401

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     tgagttacagagtacacact 85
              ||||||||||||||||||||
Sbjct: 418762 tgagttacagagtacacact 418781
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>gb|DQ191517.1| Petromyscus collinus interphotoreceptor retinoid-binding protein
           (IRBP) gene, partial cds
          Length = 1233

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 422 ctcttcgtagcctcctcactggctgctt 449
           ||||||||||||| |||| |||||||||
Sbjct: 41  ctcttcgtagcctgctcaatggctgctt 14
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>gb|AC008929.3| Homo sapiens chromosome 5, complete sequence
          Length = 125403

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    aaagatgtcaatataacaac 118
             ||||||||||||||||||||
Sbjct: 35452 aaagatgtcaatataacaac 35471
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>gb|AC159823.2| Mus musculus BAC clone RP23-113F14 from chromosome 12, complete sequence
          Length = 212532

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    aaatcagcctaaaactcaaa 200
              ||||||||||||||||||||
Sbjct: 186388 aaatcagcctaaaactcaaa 186369
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>gb|AC159274.2| Mus musculus BAC clone RP23-405C6 from chromosome 12, complete sequence
          Length = 200974

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   aaatcagcctaaaactcaaa 200
             ||||||||||||||||||||
Sbjct: 46465 aaatcagcctaaaactcaaa 46446
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>gb|AC027347.5|AC027347 Homo sapiens chromosome 5 clone CTD-2562I21, complete sequence
          Length = 148193

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    aaagatgtcaatataacaac 118
             ||||||||||||||||||||
Sbjct: 49111 aaagatgtcaatataacaac 49092
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>dbj|AK047713.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length
           enriched library, clone:C030016D13 product:hypothetical
           protein, full insert sequence
          Length = 2537

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 358 agctgttttctgctcttgga 377
           ||||||||||||||||||||
Sbjct: 461 agctgttttctgctcttgga 480
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 127    tgtcaaccatcacttttcaagtat 150
              |||||| |||||||||||||||||
Sbjct: 525965 tgtcaaacatcacttttcaagtat 525988
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>gb|BC094907.1| Mus musculus cDNA clone IMAGE:30021652
          Length = 2610

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 358 agctgttttctgctcttgga 377
           ||||||||||||||||||||
Sbjct: 495 agctgttttctgctcttgga 514
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>gb|AC153497.8| Mus musculus 10 BAC RP23-226H21 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 179741

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 122   agcattgtcaaccatcacttttca 145
             ||||||||||||||||| ||||||
Sbjct: 10505 agcattgtcaaccatcatttttca 10482
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>gb|AC147298.4| Pan troglodytes BAC clone RP43-58G7 from chromosome 7, complete
             sequence
          Length = 228916

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 516   ggttaagctctttatacttc 535
             ||||||||||||||||||||
Sbjct: 75617 ggttaagctctttatacttc 75598
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>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0007D08
          Length = 183142

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 127    tgtcaaccatcacttttcaagtat 150
              |||||| |||||||||||||||||
Sbjct: 115925 tgtcaaacatcacttttcaagtat 115948
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>gb|AC153825.7| Mus musculus 10 BAC RP23-70B19 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 279677

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 122    agcattgtcaaccatcacttttca 145
              ||||||||||||||||| ||||||
Sbjct: 188434 agcattgtcaaccatcatttttca 188411
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>gb|AC148973.4| Mus musculus BAC clone RP24-117C3 from 7, complete sequence
          Length = 197165

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 603  actgcacagcacgcacataa 622
            ||||||||||||||||||||
Sbjct: 7250 actgcacagcacgcacataa 7231
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>emb|CR925745.5| Zebrafish DNA sequence from clone DKEYP-100G5 in linkage group 10,
              complete sequence
          Length = 197787

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     cttccccaaggacttcaata 42
              ||||||||||||||||||||
Sbjct: 136351 cttccccaaggacttcaata 136370
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>emb|AL352979.4|CNS05TBZ Human chromosome 14 DNA sequence BAC R-368P15 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 155692

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 621   aatctttcaaaggttcttca 640
             ||||||||||||||||||||
Sbjct: 37879 aatctttcaaaggttcttca 37898


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,200,145
Number of Sequences: 3902068
Number of extensions: 6200145
Number of successful extensions: 123969
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123765
Number of HSP's gapped (non-prelim): 204
length of query: 647
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 624
effective length of database: 17,143,297,704
effective search space: 10697417767296
effective search space used: 10697417767296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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