ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18n15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009545.1| Triticum aestivum clone wr1.pk148.e12:fis, full i... 244 2e-61
2gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putativ... 88 3e-14
3ref|XM_470137.1| Oryza sativa (japonica cultivar-group), mRNA 78 3e-11
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 78 3e-11
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
6gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ... 78 3e-11
7emb|X80820.1|ZMABP1F Z.mays ABP1 mRNA for actin-depolymerizing f... 74 4e-10
8gb|AY104025.1| Zea mays PCO095832 mRNA sequence 74 4e-10
9emb|X97725.1|ZMABP2 Z.mays ZmABP2 mRNA for actin depolymerizing ... 72 2e-09
10ref|XM_473455.1| Oryza sativa (japonica cultivar-group), predic... 62 2e-06
11emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4,... 62 2e-06
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
13dbj|AK069329.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
14gb|AY112267.1| Zea mays CL5157_2 mRNA sequence 60 6e-06
15ref|XM_478113.1| Oryza sativa (japonica cultivar-group), mRNA 58 2e-05
16dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
17dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
18dbj|AK072662.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
19dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
20dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
21dbj|AK069605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
22gb|U58278.1|TAU58278 Triticum aestivum actin-binding protein WCO... 48 0.024
23gb|AY109068.1| Zea mays PCO068743 mRNA sequence 46 0.094
24gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 44 0.37
25gb|AC135102.16| Medicago truncatula clone mth2-8m3, complete seq... 44 0.37
26gb|AC115883.13| Mus musculus chromosome 3, clone RP24-376N4, com... 42 1.5
27ref|NM_173884.2| Bos taurus tyrosine hydroxylase (TH), mRNA 40 5.8
28gb|AC090208.4| Homo sapiens chromosome 18, clone RP11-660C14, co... 40 5.8
29gb|AC090340.6| Homo sapiens chromosome 18, clone RP11-714M23, co... 40 5.8
30gb|AF195612.1|AF195612 Lophopyrum elongatum actin depolymerizati... 40 5.8
31gb|AF196350.1|AF196350 Lophopyrum elongatum actin depolymerizati... 40 5.8
32gb|AC005297.1| Homo sapiens X BAC GS1-466O4 (Roswell Park Cancer... 40 5.8
33gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 5.8
34emb|BX072552.10| Mouse DNA sequence from clone RP23-147I24 on ch... 40 5.8
35emb|BX004970.8| Zebrafish DNA sequence from clone DKEY-9I4, comp... 40 5.8
36emb|AL954307.7| Zebrafish DNA sequence from clone CH211-201C19, ... 40 5.8
37gb|AC003971.1|AC003971 Human BAC 367D17 from chromosome 18, comp... 40 5.8
38gb|M36705.1|BOVTYRHAA Bovine tyrosine hydroxylase mRNA, complete... 40 5.8
39gb|M36794.1|BOVTHA Bovine tyrosine hydroxylase mRNA, complete cds 40 5.8 
>gb|BT009545.1| Triticum aestivum clone wr1.pk148.e12:fis, full insert mRNA
           sequence
          Length = 2114

 Score =  244 bits (123), Expect = 2e-61
 Identities = 138/143 (96%)
 Strand = Plus / Plus

                                                                       
Query: 280 tagtgtgcgcgctccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatc 339
           ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 288 tagtgcgcgcgctccttgatcacgtcgaggctcatttcgctggggtcggtggcctgcatc 347

                                                                       
Query: 340 tcgatctggatgccgtccagggtcctcttgaacttctcgttggtgcttgcgtacgtcatc 399
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 348 tcgatctggatgccgtccagggtcctcttgaacttctcgttggtgctcgcgtacgtcatc 407

                                  
Query: 400 ttgctcctcacctttgcggtgtc 422
           ||||||||||||||||| |||||
Sbjct: 408 ttgctcctcacctttgccgtgtc 430



 Score =  145 bits (73), Expect = 1e-31
 Identities = 76/77 (98%)
 Strand = Plus / Plus

                                                                       
Query: 138 ctttcgacacggtaacaaagccacaaatcatcaagaaagtttcaagagtcacaccgccaa 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ctttcgacacggtaacaaagccacaaatcatcaagaaagtttcaagagtcacaccgccaa 237

                            
Query: 198 atctataattgacataa 214
           ||||||| |||||||||
Sbjct: 238 atctatatttgacataa 254



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 90/104 (86%), Gaps = 7/104 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttaattatttataaccg-aacttggaagaacagtgcag-----cagcataacgcccg 54
           |||||||||||||||||||| ||||||||||||||||||||     |||||||| |||||
Sbjct: 36  catttaattatttataaccgtaacttggaagaacagtgcagtgcagcagcataaggcccg 95

                                                       
Query: 55  gcatataaatgggcagcggaagaaggaacggattacatgataga 98
           |||||| ||||||||   ||| || |||| ||||||||||||||
Sbjct: 96  gcatatcaatgggcacaagaa-aaagaacagattacatgataga 138
to top
>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier,
              hypothetical protein, putative NAM protein, putative
              cis-zeatin O-glucosyltransferases, putative small nuclear
              ribonucleoprotein, putative cis-zeatin
              O-glucosyltransferase, putative glutathione peroxidase,
              putative copper-exporting ATPases, putative
              serine/threonine dehydratase, and putative actin
              depolymerizing factor genes, complete cds; and hypothetical
              protein gene, partial cds
          Length = 157237

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 101/120 (84%)
 Strand = Plus / Minus

                                                                          
Query: 303    gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggt 362
              ||||| ||| || |||||||||||||||||||||| ||| | |||||||||||||||   
Sbjct: 148416 gtccatgctcatctcgctggggtcggtggcctgcagctccacctggatgccgtccagctc 148357

                                                                          
Query: 363    cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctttgcggtgtc 422
              ||||||||||   || |||| ||| ||||||  |||||||||||||||||| | ||||||
Sbjct: 148356 cctcttgaaccggtccttggagctcgcgtacagcatcttgctcctcaccttcgaggtgtc 148297
to top
>ref|XM_470137.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 703

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 99/119 (83%)
 Strand = Plus / Minus

                                                                       
Query: 292 tccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatg 351
           ||||||| |||||| ||| |||  ||||||||||||||||||||||  |||||||||| |
Sbjct: 533 tccttgagcacgtcgagggtgagctcgctggggtcggtggcctgcaggtcgatctggacg 474

                                                                      
Query: 352 ccgtccagggtcctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcac 410
           ||||| ||   | ||||||||   ||||||| ||| ||||||  |||||||||||||||
Sbjct: 473 ccgtcgagctccttcttgaacccttcgttggagctcgcgtacaccatcttgctcctcac 415
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 99/119 (83%)
 Strand = Plus / Minus

                                                                            
Query: 292      tccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatg 351
                ||||||| |||||| ||| |||  ||||||||||||||||||||||  |||||||||| |
Sbjct: 34127301 tccttgagcacgtcgagggtgagctcgctggggtcggtggcctgcaggtcgatctggacg 34127242

                                                                           
Query: 352      ccgtccagggtcctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcac 410
                ||||| ||   | ||||||||   ||||||| ||| ||||||  |||||||||||||||
Sbjct: 34127241 ccgtcgagctccttcttgaacccttcgttggagctcgcgtacaccatcttgctcctcac 34127183
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 99/119 (83%)
 Strand = Plus / Minus

                                                                            
Query: 292      tccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatg 351
                ||||||| |||||| ||| |||  ||||||||||||||||||||||  |||||||||| |
Sbjct: 34217773 tccttgagcacgtcgagggtgagctcgctggggtcggtggcctgcaggtcgatctggacg 34217714

                                                                           
Query: 352      ccgtccagggtcctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcac 410
                ||||| ||   | ||||||||   ||||||| ||| ||||||  |||||||||||||||
Sbjct: 34217713 ccgtcgagctccttcttgaacccttcgttggagctcgcgtacaccatcttgctcctcac 34217655
to top
>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
             sequence
          Length = 163828

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 99/119 (83%)
 Strand = Plus / Minus

                                                                         
Query: 292   tccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatg 351
             ||||||| |||||| ||| |||  ||||||||||||||||||||||  |||||||||| |
Sbjct: 91113 tccttgagcacgtcgagggtgagctcgctggggtcggtggcctgcaggtcgatctggacg 91054

                                                                        
Query: 352   ccgtccagggtcctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcac 410
             ||||| ||   | ||||||||   ||||||| ||| ||||||  |||||||||||||||
Sbjct: 91053 ccgtcgagctccttcttgaacccttcgttggagctcgcgtacaccatcttgctcctcac 90995
to top
>emb|X80820.1|ZMABP1F Z.mays ABP1 mRNA for actin-depolymerizing factor
          Length = 589

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                       
Query: 307 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 366
           ||||| || |||||||||||||||||||| ||||||  |||||||||||||||   ||||
Sbjct: 474 aggctcatctcgctggggtcggtggcctggatctcgcactggatgccgtccagctccctc 415

                                                    
Query: 367 ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 407
            ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 414 ctgaacctgtccttggagctggcgtacagcatcttgctcct 374
to top
>gb|AY104025.1| Zea mays PCO095832 mRNA sequence
          Length = 894

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                       
Query: 307 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 366
           ||||| || |||||||||||||||||||| ||||||  |||||||||||||||   ||||
Sbjct: 460 aggctcatctcgctggggtcggtggcctggatctcgcactggatgccgtccagctccctc 401

                                                    
Query: 367 ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 407
            ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 400 ctgaacctgtccttggagctggcgtacagcatcttgctcct 360
to top
>emb|X97725.1|ZMABP2 Z.mays ZmABP2 mRNA for actin depolymerizing factor
          Length = 546

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Minus

                                                                       
Query: 307 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 366
           ||||| || |||||||||||||||||||| ||||||  |||||||||||||||   ||||
Sbjct: 411 aggctcatctcgctggggtcggtggcctggatctcgcactggatgccgtccagctccctc 352

                                                   
Query: 367 ttgaacttctcgttggtgcttgcgtacgtcatcttgctcc 406
            ||||| | || |||| ||| ||||||  |||||||||||
Sbjct: 351 ctgaacctgtccttggagctggcgtacagcatcttgctcc 312
to top
>ref|XM_473455.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 420

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 91/111 (81%)
 Strand = Plus / Minus

                                                                       
Query: 303 gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggt 362
           ||||| ||| || |||||||| ||||| ||||||| ||| | |||||| ||||||||   
Sbjct: 396 gtccatgctcatctcgctgggatcggtcgcctgcagctccacctggatcccgtccagctc 337

                                                              
Query: 363 cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctt 413
           ||||||||||   || |||| ||| ||||||  ||||||||||||||||||
Sbjct: 336 cctcttgaaccggtccttggagctcgcgtacagcatcttgctcctcacctt 286
to top
>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24,
             complete sequence
          Length = 127506

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 91/111 (81%)
 Strand = Plus / Plus

                                                                         
Query: 303   gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggt 362
             ||||| ||| || |||||||| ||||| ||||||| ||| | |||||| ||||||||   
Sbjct: 61399 gtccatgctcatctcgctgggatcggtcgcctgcagctccacctggatcccgtccagctc 61458

                                                                
Query: 363   cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctt 413
             ||||||||||   || |||| ||| ||||||  ||||||||||||||||||
Sbjct: 61459 cctcttgaaccggtccttggagctcgcgtacagcatcttgctcctcacctt 61509
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 91/111 (81%)
 Strand = Plus / Plus

                                                                            
Query: 303      gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggt 362
                ||||| ||| || |||||||| ||||| ||||||| ||| | |||||| ||||||||   
Sbjct: 27792729 gtccatgctcatctcgctgggatcggtcgcctgcagctccacctggatcccgtccagctc 27792788

                                                                   
Query: 363      cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctt 413
                ||||||||||   || |||| ||| ||||||  ||||||||||||||||||
Sbjct: 27792789 cctcttgaaccggtccttggagctcgcgtacagcatcttgctcctcacctt 27792839
to top
>dbj|AK069329.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018P16, full
           insert sequence
          Length = 778

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 91/111 (81%)
 Strand = Plus / Minus

                                                                       
Query: 303 gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggt 362
           ||||| ||| || |||||||| ||||| ||||||| ||| | |||||| ||||||||   
Sbjct: 482 gtccatgctcatctcgctgggatcggtcgcctgcagctccacctggatcccgtccagctc 423

                                                              
Query: 363 cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctt 413
           ||||||||||   || |||| ||| ||||||  ||||||||||||||||||
Sbjct: 422 cctcttgaaccggtccttggagctcgcgtacagcatcttgctcctcacctt 372
to top
>gb|AY112267.1| Zea mays CL5157_2 mRNA sequence
          Length = 779

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                       
Query: 303 gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggt 362
           ||||| ||| || |||||||||||||||||||||| ||| | ||||||||| |||||   
Sbjct: 421 gtccatgctcatctcgctggggtcggtggcctgcagctccagctggatgccctccagctc 480

                     
Query: 363 cctcttgaac 372
           ||||||||||
Sbjct: 481 cctcttgaac 490
to top
>ref|XM_478113.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 884

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                       
Query: 307 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 366
           ||||| || ||||||||||| |||||||| ||||||  |||||| ||||||||   ||||
Sbjct: 463 aggctcatctcgctggggtctgtggcctgaatctcgcactggattccgtccagctccctc 404

                                                    
Query: 367 ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 407
            ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 403 ctgaacctgtccttggagctcgcgtacagcatcttgctcct 363
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                            
Query: 307      aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 366
                ||||| || ||||||||||| |||||||| ||||||  |||||| ||||||||   ||||
Sbjct: 17688290 aggctcatctcgctggggtctgtggcctgaatctcgcactggattccgtccagctccctc 17688231

                                                         
Query: 367      ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 407
                 ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 17688230 ctgaacctgtccttggagctcgcgtacagcatcttgctcct 17688190
to top
>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_F08
          Length = 134988

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                         
Query: 307   aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 366
             ||||| || ||||||||||| |||||||| ||||||  |||||| ||||||||   ||||
Sbjct: 92323 aggctcatctcgctggggtctgtggcctgaatctcgcactggattccgtccagctccctc 92264

                                                      
Query: 367   ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 407
              ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 92263 ctgaacctgtccttggagctcgcgtacagcatcttgctcct 92223
to top
>dbj|AK072662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134C12, full
           insert sequence
          Length = 884

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                       
Query: 307 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 366
           ||||| || ||||||||||| |||||||| ||||||  |||||| ||||||||   ||||
Sbjct: 463 aggctcatctcgctggggtctgtggcctgaatctcgcactggattccgtccagctccctc 404

                                                    
Query: 367 ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 407
            ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 403 ctgaacctgtccttggagctcgcgtacagcatcttgctcct 363
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Plus

                                                                            
Query: 322      gggtcggtggcctgcatctcgatctggatgccgtccagggtcctcttgaacttctcgttg 381
                ||||| |||||||||| ||| | |||||||||||||||   ||||||||||   || |||
Sbjct: 26938807 gggtcagtggcctgcagctccacctggatgccgtccagctccctcttgaaccgatccttg 26938866

                                              
Query: 382      gtgcttgcgtacgtcatcttgctcctcacc 411
                | ||| || |||  ||||||||||||||||
Sbjct: 26938867 gagctagcatacagcatcttgctcctcacc 26938896
to top
>dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1001_D02
          Length = 129081

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Plus

                                                                          
Query: 322    gggtcggtggcctgcatctcgatctggatgccgtccagggtcctcttgaacttctcgttg 381
              ||||| |||||||||| ||| | |||||||||||||||   ||||||||||   || |||
Sbjct: 117350 gggtcagtggcctgcagctccacctggatgccgtccagctccctcttgaaccgatccttg 117409

                                            
Query: 382    gtgcttgcgtacgtcatcttgctcctcacc 411
              | ||| || |||  ||||||||||||||||
Sbjct: 117410 gagctagcatacagcatcttgctcctcacc 117439
to top
>dbj|AK069605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024H08, full
           insert sequence
          Length = 914

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 322 gggtcggtggcctgcatctcgatctggatgccgtccagggtcctcttgaacttctcgttg 381
           ||||| |||||||||| ||| | |||||||||||||||   ||||||||||   || |||
Sbjct: 506 gggtcagtggcctgcagctccacctggatgccgtccagctccctcttgaaccgatccttg 447

                                         
Query: 382 gtgcttgcgtacgtcatcttgctcctcacc 411
           | ||| || |||  ||||||||||||||||
Sbjct: 446 gagctagcatacagcatcttgctcctcacc 417
to top
>gb|U58278.1|TAU58278 Triticum aestivum actin-binding protein WCOR719 (Wcor719) mRNA,
           complete cds
          Length = 648

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 316 tcgctggggtcggtggcctgcatctcgatctggatgccgtccag 359
           ||||||| ||||||||||||||  |||||||| | |||||||||
Sbjct: 470 tcgctggcgtcggtggcctgcacgtcgatctgcacgccgtccag 427
to top
>gb|AY109068.1| Zea mays PCO068743 mRNA sequence
          Length = 731

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 71/87 (81%)
 Strand = Plus / Minus

                                                                       
Query: 324 gtcggtggcctgcatctcgatctggatgccgtccagggtcctcttgaacttctcgttggt 383
           |||||||||||| |  || | ||| |||||||||||   || ||||||| |||| |||| 
Sbjct: 502 gtcggtggcctggagatccacctgaatgccgtccagctcccgcttgaacctctccttgga 443

                                      
Query: 384 gcttgcgtacgtcatcttgctcctcac 410
           ||| |||||  ||||||||||||||||
Sbjct: 442 gctggcgtagatcatcttgctcctcac 416
to top
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 303     gtccaggctgatttcgctggggtcgg 328
               |||| |||||||||||||||||||||
Sbjct: 4866116 gtcccggctgatttcgctggggtcgg 4866091
to top
>gb|AC135102.16| Medicago truncatula clone mth2-8m3, complete sequence
          Length = 144042

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                   
Query: 363   cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctttgc 416
             |||||||||| | || ||||||||||| ||  |||||||||| |||||| ||||
Sbjct: 67112 cctcttgaacctttctttggtgcttgcataaatcatcttgcttctcacccttgc 67059
to top
>gb|AC115883.13| Mus musculus chromosome 3, clone RP24-376N4, complete sequence
          Length = 180645

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 357    cagggtcctcttgaacttctc 377
              |||||||||||||||||||||
Sbjct: 138047 cagggtcctcttgaacttctc 138067
to top
>ref|NM_173884.2| Bos taurus tyrosine hydroxylase (TH), mRNA
          Length = 1706

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 330  ggcctgcatctcgatctggatgccgtccaggg 361
            |||||||||||||  ||||| |||||||||||
Sbjct: 1464 ggcctgcatctcgtcctggacgccgtccaggg 1433
to top
>gb|AC090208.4| Homo sapiens chromosome 18, clone RP11-660C14, complete sequence
          Length = 200979

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    ctataattgacataataaat 219
              ||||||||||||||||||||
Sbjct: 200019 ctataattgacataataaat 200000
to top
>gb|AC090340.6| Homo sapiens chromosome 18, clone RP11-714M23, complete sequence
          Length = 170969

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 200    ctataattgacataataaat 219
              ||||||||||||||||||||
Sbjct: 127777 ctataattgacataataaat 127796
to top
>gb|AF195612.1|AF195612 Lophopyrum elongatum actin depolymerization factor-like protein
           (ESI28) gene, complete cds
          Length = 1349

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 316 tcgctggggtcggtggcctgcatctcgatctggatgccgtccag 359
           ||||||| ||||||||||||||  ||||| || | |||||||||
Sbjct: 734 tcgctggcgtcggtggcctgcacgtcgatttgcacgccgtccag 691
to top
>gb|AF196350.1|AF196350 Lophopyrum elongatum actin depolymerization factor-like protein
           (ESI28) gene, complete cds
          Length = 1013

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 316 tcgctggggtcggtggcctgcatctcgatctggatgccgtccag 359
           ||||||| ||||||||||||||  ||||| || | |||||||||
Sbjct: 734 tcgctggcgtcggtggcctgcacgtcgatttgcacgccgtccag 691
to top
>gb|AC005297.1| Homo sapiens X BAC GS1-466O4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177503

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 196    aaatctataattgacataataaat 219
              |||||||||||||||||| |||||
Sbjct: 150960 aaatctataattgacatactaaat 150937
to top
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 196     aaatctataattgacataataaat 219
               |||||||||||||| |||||||||
Sbjct: 2915373 aaatctataattgaaataataaat 2915396
to top
>emb|BX072552.10| Mouse DNA sequence from clone RP23-147I24 on chromosome X, complete
             sequence
          Length = 160230

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   caaatctataattgacataa 214
             ||||||||||||||||||||
Sbjct: 31926 caaatctataattgacataa 31945
to top
>emb|BX004970.8| Zebrafish DNA sequence from clone DKEY-9I4, complete sequence
          Length = 246777

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   ttggatggatggttggtttg 273
             ||||||||||||||||||||
Sbjct: 93043 ttggatggatggttggtttg 93024
to top
>emb|AL954307.7| Zebrafish DNA sequence from clone CH211-201C19, complete sequence
          Length = 175575

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    tggatggatggttggtttgc 274
              ||||||||||||||||||||
Sbjct: 130295 tggatggatggttggtttgc 130314
to top
>gb|AC003971.1|AC003971 Human BAC 367D17 from chromosome 18, complete sequence
          Length = 87978

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   ctataattgacataataaat 219
             ||||||||||||||||||||
Sbjct: 26898 ctataattgacataataaat 26917
to top
>gb|M36705.1|BOVTYRHAA Bovine tyrosine hydroxylase mRNA, complete cds
          Length = 1706

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 330  ggcctgcatctcgatctggatgccgtccaggg 361
            |||||||||||||  ||||| |||||||||||
Sbjct: 1464 ggcctgcatctcgtcctggacgccgtccaggg 1433
to top
>gb|M36794.1|BOVTHA Bovine tyrosine hydroxylase mRNA, complete cds
          Length = 1696

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 330  ggcctgcatctcgatctggatgccgtccaggg 361
            |||||||||||||  ||||| |||||||||||
Sbjct: 1460 ggcctgcatctcgtcctggacgccgtccaggg 1429


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,656,596
Number of Sequences: 3902068
Number of extensions: 3656596
Number of successful extensions: 68755
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68538
Number of HSP's gapped (non-prelim): 207
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top