ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18n14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TILS_MYCH2 (Q601M6) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR... 30 2.7
2K0427_HUMAN (O43310) Protein KIAA0427 29 4.5
3K0427_MOUSE (Q6PEE2) Protein KIAA0427 homolog 29 4.5
4LGT_MYCGA (Q7NAE3) Prolipoprotein diacylglyceryl transferase (EC... 29 4.5
5CYB_ARTJA (Q95738) Cytochrome b 29 4.5
6CYB_ARTTL (Q95750) Cytochrome b 29 5.9
7ATS19_MOUSE (P59509) ADAMTS-19 precursor (EC 3.4.24.-) (A disint... 28 7.7

>TILS_MYCH2 (Q601M6) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 297

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -2

Query: 159 FLKWREKKEICYLWCGLQLTRLDDRSNYLYIYKMQQGNCFGFALSKDS 16
           FL WR KK+I  +    ++  LDD+SN+   Y   Q N   F L K S
Sbjct: 145 FLYWRTKKQIIRICQQKKIPYLDDQSNFTGKY---QRNQIRFLLEKKS 189



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>K0427_HUMAN (O43310) Protein KIAA0427|
          Length = 598

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = -2

Query: 291 FICYVQLTMRVQTGERFRVFIASVLFAVGFCCIQFMGFRRNECCFLKWREKKEICYLWCG 112
           F+C V  TMR  TGE FRV +  +     + C++ +         L+ ++ KE   L C 
Sbjct: 480 FLCEVFGTMRSSTGEPFRVLVCPI-----YTCLREL---------LQSQDVKEDAVLCCS 525

Query: 111 LQL 103
           ++L
Sbjct: 526 MEL 528



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>K0427_MOUSE (Q6PEE2) Protein KIAA0427 homolog|
          Length = 623

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = -2

Query: 291 FICYVQLTMRVQTGERFRVFIASVLFAVGFCCIQFMGFRRNECCFLKWREKKEICYLWCG 112
           F+C V  TMR  TGE FRV +  +     + C++ +         L+ ++ KE   L C 
Sbjct: 505 FLCEVFGTMRSSTGEPFRVLVCPI-----YTCLREL---------LQSQDVKEDAVLCCS 550

Query: 111 LQL 103
           ++L
Sbjct: 551 MEL 553



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>LGT_MYCGA (Q7NAE3) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)|
          Length = 369

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 19/73 (26%), Positives = 38/73 (52%)
 Frame = -2

Query: 279 VQLTMRVQTGERFRVFIASVLFAVGFCCIQFMGFRRNECCFLKWREKKEICYLWCGLQLT 100
           ++L +  Q   +F+ F+ S++ +V F     +GF   +  F ++R KK   +L+  +++ 
Sbjct: 259 IRLIIETQRDSQFK-FVTSIVTSVLFLLGGSIGFIFTQWIFPRFRNKKNYFFLFNKVKIY 317

Query: 99  RLDDRSNYLYIYK 61
            +    NYL  YK
Sbjct: 318 FIGLFKNYLNKYK 330



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>CYB_ARTJA (Q95738) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 133 FLFLPPFQETALIPAKTHKLYTTETNSKEH*GNENSKSFARLHPH 267
           F FLPPF  TAL+    H L+  ET S    G  +       HP+
Sbjct: 181 FHFLPPFIVTALV--MVHLLFLHETGSNNPTGIPSDPDMIHSHPY 223



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>CYB_ARTTL (Q95750) Cytochrome b|
          Length = 379

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = +1

Query: 133 FLFLPPFQETALIPAKTHKLYTTETNSKEH*GNENSKSFARLHPHGQLHITNEGMTMMSR 312
           F FL PF  TAL+    H L+  ET S    G  +      LHP+  +      + M++ 
Sbjct: 181 FHFLLPFIVTALV--MVHLLFLHETGSNNPTGFPSDPDMIPLHPYYTIKDILGFLVMLTA 238

Query: 313 SFPLV 327
             PLV
Sbjct: 239 LAPLV 243



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>ATS19_MOUSE (P59509) ADAMTS-19 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 19)
           (ADAM-TS 19) (ADAM-TS19)
          Length = 1210

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 130 NFLFLPPFQETALIPAKTHKLYTTETNSKE 219
           +FLF+ PF +T  I    H+LY  + +++E
Sbjct: 255 DFLFIEPFNDTMAIIGHPHRLYRQKRSTEE 284


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,019,384
Number of Sequences: 219361
Number of extensions: 1056657
Number of successful extensions: 2477
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2476
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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