ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18n10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF469491.1| Triticum aestivum RUB1-conjugating enzyme mRNA, p... 135 1e-28
2dbj|AK073821.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 9e-21
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 100 8e-18
4dbj|AP005684.3| Oryza sativa (japonica cultivar-group) genomic D... 100 8e-18
5ref|NM_195275.1| Oryza sativa (japonica cultivar-group) putative... 68 3e-08
6dbj|AK066484.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
7dbj|AK064839.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
8ref|XM_482060.1| Oryza sativa (japonica cultivar-group), mRNA 62 2e-06
9ref|XM_507579.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 2e-06
10ref|XM_507208.2| PREDICTED Oryza sativa (japonica cultivar-group... 62 2e-06
11gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
12dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
13dbj|AK104511.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
14dbj|AK104158.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
15dbj|AK070541.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
16gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
17gb|AY591341.1| Zea mays putative RUB1 conjugating enzyme mRNA, c... 54 4e-04
18gb|AY104531.1| Zea mays PCO100562 mRNA sequence 54 4e-04
19gb|AE008766.1| Salmonella typhimurium LT2, section 70 of 220 of ... 46 0.11
20emb|AL627270.1| Salmonella enterica serovar Typhi (Salmonella ty... 46 0.11
21dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
22gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 46 0.11
23dbj|AP004465.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
24gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 46 0.11
25gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 46 0.11
26gb|M84575.1|STYDCP Salmonella typhimurium dipeptidyl carboxypept... 46 0.11
27gb|AC122669.6| Rattus norvegicus 4 BAC CH230-172C22 (Children's ... 44 0.42
28gb|AC116662.1| Rattus norvegicus, clone RP31-256A2, complete seq... 44 0.42
29gb|AE006018.1| Caulobacter crescentus CB15 section 344 of 359 of... 42 1.7
30gb|AC073166.7| Oryza sativa chromosome 10 BAC OSJNBb0064P21 geno... 42 1.7
31dbj|AP001001.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.7
32gb|AC163610.4| Mus musculus BAC clone RP23-59P17 from chromosome... 40 6.6
33gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 6.6
34gb|AC132901.11| Mus musculus chromosome 13, clone RP24-282A18, c... 40 6.6
35gb|AC129203.4| Mus musculus BAC clone RP24-225M1 from chromosome... 40 6.6
36gb|AC165347.4| Mus musculus BAC clone RP23-348B21 from chromosom... 40 6.6
37emb|AL670999.4| Mouse DNA sequence from clone RP23-168F16 on chr... 40 6.6
38emb|CR352264.6| Mouse DNA sequence from clone RP23-344N9 on chro... 40 6.6
39emb|AL731773.20| Mouse DNA sequence from clone RP23-152G20 on ch... 40 6.6
40gb|AC026843.9| Homo sapiens chromosome 11, clone RP11-261E12, co... 40 6.6
41gb|AC022695.9| Homo sapiens chromosome 8, clone RP11-700E23, com... 40 6.6
42gb|AC021269.4|AC021269 Homo sapiens, clone RP11-15D14, complete ... 40 6.6
43gb|AC155308.2| Mus musculus BAC clone RP24-150P15 from chromosom... 40 6.6
44gb|AC173115.2| Mus musculus BAC clone RP23-26D2 from chromosome ... 40 6.6
45gb|AC147473.3| Mus musculus BAC clone RP24-353P11 from 13, compl... 40 6.6 
>gb|AF469491.1| Triticum aestivum RUB1-conjugating enzyme mRNA, partial cds
          Length = 783

 Score =  135 bits (68), Expect = 1e-28
 Identities = 145/162 (89%), Gaps = 7/162 (4%)
 Strand = Plus / Minus

                                                                       
Query: 329 acttgcaccttgggaaa-tgggtgttatcgaca-tagcctcca-gacatcgccatctgga 385
           ||||||||||||||||| ||||||| ||||| | ||||||||  ||||||||||| ||||
Sbjct: 690 acttgcaccttgggaaaatgggtgtaatcganaatagcctccccgacatcgccatttgga 631

                                                                       
Query: 386 cgtttctctggaactt-ctgcgggttgtc-tcggaggacggccgcagcttcatgattcaa 443
           |||||||||||||| | |||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 630 cgtttctctggaacntnctgcgggttgtcctcggaggacggccgcggcttcatgattcaa 571

                                                     
Query: 444 cggatcc-tcgtcgttgggttgtgag-aaaagaaggtttaaa 483
            || ||| ||||| |||||||| ||| |||||||||||||||
Sbjct: 570 tgggtccttcgtcattgggttgcgagaaaaagaaggtttaaa 529
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>dbj|AK073821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069E18, full
           insert sequence
          Length = 898

 Score =  109 bits (55), Expect = 9e-21
 Identities = 112/131 (85%)
 Strand = Plus / Minus

                                                                       
Query: 355 tcgacatagcctccagacatcgccatctggacgtttctctggaacttctgcgggttgtct 414
           |||||||||||||| ||||||||| |||| || || ||| ||||||| || ||||  |||
Sbjct: 664 tcgacatagcctcccgacatcgccgtctgaacattcctccggaacttttgtgggtcatct 605

                                                                       
Query: 415 cggaggacggccgcagcttcatgattcaacggatcctcgtcgttgggttgtgagaaaaga 474
           |||||||| |||||||| ||||| ||||| ||||||||||| ||||||||   |||||||
Sbjct: 604 cggaggacagccgcagcatcatggttcaagggatcctcgtcattgggttgaatgaaaaga 545

                      
Query: 475 aggtttaaacc 485
           ||||| |||||
Sbjct: 544 aggttcaaacc 534
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 95/110 (86%)
 Strand = Plus / Minus

                                                                           
Query: 355     tcgacatagcctccagacatcgccatctggacgtttctctggaacttctgcgggttgtct 414
               |||||||||||||| ||||||||| |||| || || ||| ||||||| || ||||  |||
Sbjct: 9309294 tcgacatagcctcccgacatcgccgtctgaacattcctccggaacttttgtgggtcatct 9309235

                                                                 
Query: 415     cggaggacggccgcagcttcatgattcaacggatcctcgtcgttgggttg 464
               |||||||| |||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct: 9309234 cggaggacagccgcagcatcatggttcaagggatcctcgtcattgggttg 9309185
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>dbj|AP005684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1742_G01
          Length = 154912

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 95/110 (86%)
 Strand = Plus / Minus

                                                                          
Query: 355    tcgacatagcctccagacatcgccatctggacgtttctctggaacttctgcgggttgtct 414
              |||||||||||||| ||||||||| |||| || || ||| ||||||| || ||||  |||
Sbjct: 134585 tcgacatagcctcccgacatcgccgtctgaacattcctccggaacttttgtgggtcatct 134526

                                                                
Query: 415    cggaggacggccgcagcttcatgattcaacggatcctcgtcgttgggttg 464
              |||||||| |||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct: 134525 cggaggacagccgcagcatcatggttcaagggatcctcgtcattgggttg 134476
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>ref|NM_195275.1| Oryza sativa (japonica cultivar-group) putative
           ubiquitin-conjugating enzyme (OSJNBb0038H12.1), mRNA
          Length = 977

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                       
Query: 406 gggttgtctcggaggacggccgcagcttcatgattcaacggatcctcgtcgttgggttgt 465
           |||||||| |||||||| || || |||||||| |||||||||||||| ||||| ||||| 
Sbjct: 587 gggttgtcacggaggacagctgctgcttcatggttcaacggatcctcatcgtttggttgc 528

                         
Query: 466 gagaaaagaaggtt 479
           |  |||||||||||
Sbjct: 527 gtaaaaagaaggtt 514
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>dbj|AK066484.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070C18, full
           insert sequence
          Length = 942

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                       
Query: 406 gggttgtctcggaggacggccgcagcttcatgattcaacggatcctcgtcgttgggttgt 465
           |||||||| |||||||| || || |||||||| |||||||||||||| ||||| ||||| 
Sbjct: 619 gggttgtcacggaggacagctgctgcttcatggttcaacggatcctcatcgtttggttgc 560

                         
Query: 466 gagaaaagaaggtt 479
           |  |||||||||||
Sbjct: 559 gtaaaaagaaggtt 546
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>dbj|AK064839.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F24, full
            insert sequence
          Length = 2813

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 406  gggttgtctcggaggacggccgcagcttcatgattcaacggatcctcgtcgttgggttgt 465
            |||||||| |||||||| || || |||||||| |||||||||||||| ||||| ||||| 
Sbjct: 1715 gggttgtcacggaggacagctgctgcttcatggttcaacggatcctcatcgtttggttgc 1656

                          
Query: 466  gagaaaagaaggtt 479
            |  |||||||||||
Sbjct: 1655 gtaaaaagaaggtt 1642
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>ref|XM_482060.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1033

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Minus

                                                                       
Query: 358 acatagcctccagacatcgccatctggacgtttctctggaacttctgcgggttgtctcgg 417
           ||||||||||||| ||| ||| ||||||| |||||||  ||||| |  ||||||||||| 
Sbjct: 629 acatagcctccagccattgccctctggacatttctctcaaacttttctgggttgtctcga 570

                                                                      
Query: 418 aggacggccgcagcttcatgattcaacggatcctcgtcgttgggttgtgagaaaagaag 476
           || || || || || |||||||| |  || ||||| || || |||||||||||||||||
Sbjct: 569 agaactgctgccgcctcatgatttagagggtcctcatcattaggttgtgagaaaagaag 511
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>ref|XM_507579.1| PREDICTED Oryza sativa (japonica cultivar-group), P0690C12.28 mRNA
          Length = 1130

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Minus

                                                                       
Query: 358 acatagcctccagacatcgccatctggacgtttctctggaacttctgcgggttgtctcgg 417
           ||||||||||||| ||| ||| ||||||| |||||||  ||||| |  ||||||||||| 
Sbjct: 644 acatagcctccagccattgccctctggacatttctctcaaacttttctgggttgtctcga 585

                                                                      
Query: 418 aggacggccgcagcttcatgattcaacggatcctcgtcgttgggttgtgagaaaagaag 476
           || || || || || |||||||| |  || ||||| || || |||||||||||||||||
Sbjct: 584 agaactgctgccgcctcatgatttagagggtcctcatcattaggttgtgagaaaagaag 526
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>ref|XM_507208.2| PREDICTED Oryza sativa (japonica cultivar-group), P0690C12.28 mRNA
          Length = 1195

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Minus

                                                                       
Query: 358 acatagcctccagacatcgccatctggacgtttctctggaacttctgcgggttgtctcgg 417
           ||||||||||||| ||| ||| ||||||| |||||||  ||||| |  ||||||||||| 
Sbjct: 671 acatagcctccagccattgccctctggacatttctctcaaacttttctgggttgtctcga 612

                                                                      
Query: 418 aggacggccgcagcttcatgattcaacggatcctcgtcgttgggttgtgagaaaagaag 476
           || || || || || |||||||| |  || ||||| || || |||||||||||||||||
Sbjct: 611 agaactgctgccgcctcatgatttagagggtcctcatcattaggttgtgagaaaagaag 553
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>gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0038H12 map E60284SA, complete sequence
          Length = 139190

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                        
Query: 406   gggttgtctcggaggacggccgcagcttcatgattcaacggatcctcgtcgttgggttg 464
             |||||||| |||||||| || || |||||||| |||||||||||||| ||||| |||||
Sbjct: 23824 gggttgtcacggaggacagctgctgcttcatggttcaacggatcctcatcgtttggttg 23882
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                          
Query: 406     gggttgtctcggaggacggccgcagcttcatgattcaacggatcctcgtcgttgggttg 464
               |||||||| |||||||| || || |||||||| |||||||||||||| ||||| |||||
Sbjct: 5900059 gggttgtcacggaggacagctgctgcttcatggttcaacggatcctcatcgtttggttg 5900001



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 126      ccaaacaagcacaacagcagt 146
                |||||||||||||||||||||
Sbjct: 20551222 ccaaacaagcacaacagcagt 20551242
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>dbj|AK104511.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-H10, full
           insert sequence
          Length = 1130

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Minus

                                                                       
Query: 358 acatagcctccagacatcgccatctggacgtttctctggaacttctgcgggttgtctcgg 417
           ||||||||||||| ||| ||| ||||||| |||||||  ||||| |  ||||||||||| 
Sbjct: 644 acatagcctccagccattgccctctggacatttctctcaaacttttctgggttgtctcga 585

                                                                      
Query: 418 aggacggccgcagcttcatgattcaacggatcctcgtcgttgggttgtgagaaaagaag 476
           || || || || || |||||||| |  || ||||| || || |||||||||||||||||
Sbjct: 584 agaactgctgccgcctcatgatttagagggtcctcatcattaggttgtgagaaaagaag 526
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>dbj|AK104158.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-H05, full
           insert sequence
          Length = 1033

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Minus

                                                                       
Query: 358 acatagcctccagacatcgccatctggacgtttctctggaacttctgcgggttgtctcgg 417
           ||||||||||||| ||| ||| ||||||| |||||||  ||||| |  ||||||||||| 
Sbjct: 629 acatagcctccagccattgccctctggacatttctctcaaacttttctgggttgtctcga 570

                                                                      
Query: 418 aggacggccgcagcttcatgattcaacggatcctcgtcgttgggttgtgagaaaagaag 476
           || || || || || |||||||| |  || ||||| || || |||||||||||||||||
Sbjct: 569 agaactgctgccgcctcatgatttagagggtcctcatcattaggttgtgagaaaagaag 511
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>dbj|AK070541.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056A05, full
           insert sequence
          Length = 1195

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Minus

                                                                       
Query: 358 acatagcctccagacatcgccatctggacgtttctctggaacttctgcgggttgtctcgg 417
           ||||||||||||| ||| ||| ||||||| |||||||  ||||| |  ||||||||||| 
Sbjct: 671 acatagcctccagccattgccctctggacatttctctcaaacttttctgggttgtctcga 612

                                                                      
Query: 418 aggacggccgcagcttcatgattcaacggatcctcgtcgttgggttgtgagaaaagaag 476
           || || || || || |||||||| |  || ||||| || || |||||||||||||||||
Sbjct: 611 agaactgctgccgcctcatgatttagagggtcctcatcattaggttgtgagaaaagaag 553
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                          
Query: 406     gggttgtctcggaggacggccgcagcttcatgattcaacggatcctcgtcgttgggttg 464
               |||||||| |||||||| || || |||||||| |||||||||||||| ||||| |||||
Sbjct: 5901245 gggttgtcacggaggacagctgctgcttcatggttcaacggatcctcatcgtttggttg 5901187



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 126      ccaaacaagcacaacagcagt 146
                |||||||||||||||||||||
Sbjct: 20562494 ccaaacaagcacaacagcagt 20562514
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>gb|AY591341.1| Zea mays putative RUB1 conjugating enzyme mRNA, complete cds
          Length = 996

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 406 gggttgtctcggaggacggccgcagcttcatgattcaacggatcctcgtcgttgggttg 464
           |||||| | |||||||| || |||||||| || ||||| |||||||||||||| |||||
Sbjct: 668 gggttgccacggaggacagctgcagcttcgtggttcaaaggatcctcgtcgtttggttg 610
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>gb|AY104531.1| Zea mays PCO100562 mRNA sequence
          Length = 985

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 406 gggttgtctcggaggacggccgcagcttcatgattcaacggatcctcgtcgttgggttg 464
           |||||| | |||||||| || |||||||| || ||||| |||||||||||||| |||||
Sbjct: 668 gggttgccacggaggacagctgcagcttcgtggttcaaaggatcctcgtcgtttggttg 610
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>gb|AE008766.1| Salmonella typhimurium LT2, section 70 of 220 of the complete genome
          Length = 27275

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 312  gccagcccgcccgctttacttgc 334
            |||||||||||||||||||||||
Sbjct: 2368 gccagcccgcccgctttacttgc 2346
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>emb|AL627270.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 6/20
          Length = 266050

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 312    gccagcccgcccgctttacttgc 334
              |||||||||||||||||||||||
Sbjct: 195148 gccagcccgcccgctttacttgc 195170
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                           
Query: 358      acatagcctccagacatcgccatctggacgtttctctggaacttctgcgggttgtctcg 416
                ||||||||||||| ||| ||| ||||||| |||||||  ||||| |  |||||||||||
Sbjct: 17506318 acatagcctccagccattgccctctggacatttctctcaaacttttctgggttgtctcg 17506376
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 312     gccagcccgcccgctttacttgc 334
               |||||||||||||||||||||||
Sbjct: 1424575 gccagcccgcccgctttacttgc 1424597
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>dbj|AP004465.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0690C12
          Length = 139693

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                         
Query: 358    acatagcctccagacatcgccatctggacgtttctctggaacttctgcgggttgtctcg 416
              ||||||||||||| ||| ||| ||||||| |||||||  ||||| |  |||||||||||
Sbjct: 117163 acatagcctccagccattgccctctggacatttctctcaaacttttctgggttgtctcg 117221
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 312     gccagcccgcccgctttacttgc 334
               |||||||||||||||||||||||
Sbjct: 1478517 gccagcccgcccgctttacttgc 1478495
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 312     gccagcccgcccgctttacttgc 334
               |||||||||||||||||||||||
Sbjct: 1628398 gccagcccgcccgctttacttgc 1628376
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>gb|M84575.1|STYDCP Salmonella typhimurium dipeptidyl carboxypeptidase (dcp) gene,
           complete cds
          Length = 2841

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 312 gccagcccgcccgctttacttgc 334
           |||||||||||||||||||||||
Sbjct: 980 gccagcccgcccgctttacttgc 958
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>gb|AC122669.6| Rattus norvegicus 4 BAC CH230-172C22 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 227955

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 112   ttccagaacatccaccaaacaa 133
             ||||||||||||||||||||||
Sbjct: 62669 ttccagaacatccaccaaacaa 62690
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>gb|AC116662.1| Rattus norvegicus, clone RP31-256A2, complete sequence
          Length = 112570

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 112   ttccagaacatccaccaaacaa 133
             ||||||||||||||||||||||
Sbjct: 52578 ttccagaacatccaccaaacaa 52557
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>gb|AE006018.1| Caulobacter crescentus CB15 section 344 of 359 of the complete genome
          Length = 10978

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 419  ggacggccgcagcttcatgat 439
            |||||||||||||||||||||
Sbjct: 5975 ggacggccgcagcttcatgat 5955
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>gb|AC073166.7| Oryza sativa chromosome 10 BAC OSJNBb0064P21 genomic sequence, complete
             sequence
          Length = 142114

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 126   ccaaacaagcacaacagcagt 146
             |||||||||||||||||||||
Sbjct: 56512 ccaaacaagcacaacagcagt 56532
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>dbj|AP001001.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-677I18, complete
              sequence
          Length = 182429

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 462    ttgtgagaaaagaaggtttaa 482
              |||||||||||||||||||||
Sbjct: 136479 ttgtgagaaaagaaggtttaa 136459
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>gb|AC163610.4| Mus musculus BAC clone RP23-59P17 from chromosome 13, complete sequence
          Length = 237111

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   tcacatcttcttgacacaaa 165
             ||||||||||||||||||||
Sbjct: 57211 tcacatcttcttgacacaaa 57230
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 47      cagctcgatacaggcgagtttcgc 70
               ||||||| ||||||||||||||||
Sbjct: 1068546 cagctcgctacaggcgagtttcgc 1068523
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>gb|AC132901.11| Mus musculus chromosome 13, clone RP24-282A18, complete sequence
          Length = 187090

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   accaaacaagcacaacagca 144
             ||||||||||||||||||||
Sbjct: 21870 accaaacaagcacaacagca 21889
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>gb|AC129203.4| Mus musculus BAC clone RP24-225M1 from chromosome 16, complete sequence
          Length = 152208

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    catttcttcttcatgttaca 105
             ||||||||||||||||||||
Sbjct: 37831 catttcttcttcatgttaca 37850
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>gb|AC165347.4| Mus musculus BAC clone RP23-348B21 from chromosome 13, complete
             sequence
          Length = 205783

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   accaaacaagcacaacagca 144
             ||||||||||||||||||||
Sbjct: 13455 accaaacaagcacaacagca 13436
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>emb|AL670999.4| Mouse DNA sequence from clone RP23-168F16 on chromosome 4 Contains the
              (pseudo)gene for a novel protein similar to high-mobility
              group box 1 (Hmgb1), complete sequence
          Length = 226259

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    tatgatagatacatttcctg 189
              ||||||||||||||||||||
Sbjct: 143626 tatgatagatacatttcctg 143607
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>emb|CR352264.6| Mouse DNA sequence from clone RP23-344N9 on chromosome 4 Contains a high
              mobility group box 1 (Hmgb1) pseudogene, complete sequence
          Length = 185595

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    tatgatagatacatttcctg 189
              ||||||||||||||||||||
Sbjct: 102959 tatgatagatacatttcctg 102940
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>emb|AL731773.20| Mouse DNA sequence from clone RP23-152G20 on chromosome X, complete
             sequence
          Length = 162215

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     ataattagtttgacacaaca 27
             ||||||||||||||||||||
Sbjct: 11816 ataattagtttgacacaaca 11797
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>gb|AC026843.9| Homo sapiens chromosome 11, clone RP11-261E12, complete sequence
          Length = 166287

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   accttgggaaatgggtgtta 354
             ||||||||||||||||||||
Sbjct: 56532 accttgggaaatgggtgtta 56513



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 335  accttgggaaatgggtgtta 354
            ||||||||||||||||||||
Sbjct: 7614 accttgggaaatgggtgtta 7633
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>gb|AC022695.9| Homo sapiens chromosome 8, clone RP11-700E23, complete sequence
          Length = 184759

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   cagcagtcacatcttcttga 159
             ||||||||||||||||||||
Sbjct: 41413 cagcagtcacatcttcttga 41394
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>gb|AC021269.4|AC021269 Homo sapiens, clone RP11-15D14, complete sequence
          Length = 144609

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 335    accttgggaaatgggtgtta 354
              ||||||||||||||||||||
Sbjct: 101144 accttgggaaatgggtgtta 101163
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>gb|AC155308.2| Mus musculus BAC clone RP24-150P15 from chromosome 13, complete
             sequence
          Length = 132564

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   caaacaagcacaacagcagt 146
             ||||||||||||||||||||
Sbjct: 94428 caaacaagcacaacagcagt 94447
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>gb|AC173115.2| Mus musculus BAC clone RP23-26D2 from chromosome 13, complete sequence
          Length = 221491

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   tcacatcttcttgacacaaa 165
             ||||||||||||||||||||
Sbjct: 45546 tcacatcttcttgacacaaa 45527
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>gb|AC147473.3| Mus musculus BAC clone RP24-353P11 from 13, complete sequence
          Length = 158972

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 127  caaacaagcacaacagcagt 146
            ||||||||||||||||||||
Sbjct: 9900 caaacaagcacaacagcagt 9919


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,973,820
Number of Sequences: 3902068
Number of extensions: 3973820
Number of successful extensions: 71630
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71406
Number of HSP's gapped (non-prelim): 221
length of query: 485
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 463
effective length of database: 17,147,199,772
effective search space: 7939153494436
effective search space used: 7939153494436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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