ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18n09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK100322.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 1e-79
2dbj|AB071299.1| Oryza sativa OsARF10 mRNA for auxin response fac... 305 1e-79
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 246 8e-62
4dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic D... 246 8e-62
5dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic D... 246 8e-62
6gb|AF040648.2| Caenorhabditis elegans fosmid H19M22, complete se... 44 0.60
7gb|AC116502.11| Mus musculus chromosome 13, clone RP24-300G17, c... 42 2.4
8gb|AC091010.5| Homo sapiens chromosome 8, clone RP11-680F23, com... 42 2.4
9ref|NM_170949.2| Caenorhabditis elegans Enhancer of Ksr-1 Lethal... 42 2.4
10emb|AL132876.4|CEY105E8A Caenorhabditis elegans YAC Y105E8A, com... 42 2.4
11emb|BX000344.15| Mouse DNA sequence from clone RP24-88L6 on chro... 42 2.4
12ref|XM_634067.1| Dictyostelium discoideum hypothetical protein (... 40 9.4
13ref|XM_628881.1| Dictyostelium discoideum putative STE20 family ... 40 9.4
14gb|AC122893.6| Mus musculus BAC clone RP23-67C3 from chromosome ... 40 9.4
15ref|XM_586753.2| PREDICTED: Bos taurus similar to sacsin (LOC539... 40 9.4
16gb|AY812171.1| Schistosoma japonicum SJCHGC04041 protein mRNA, p... 40 9.4
17gb|AC127377.4| Mus musculus BAC clone RP23-51N3 from chromosome ... 40 9.4
18ref|XM_744718.1| Aspergillus fumigatus Af293 CPSF subunit A (Afu... 40 9.4
19gb|AC104323.27| Mus musculus strain C57BL/6J chromosome 17 clone... 40 9.4
20emb|Z97204.1|SPBC31F10 S.pombe chromosome II cosmid c31F10 40 9.4
21emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g... 40 9.4
22emb|AL928772.8| Mouse DNA sequence from clone RP23-247I15 on chr... 40 9.4
23gb|DP000004.1| Lemur catta target 1 genomic scaffold 40 9.4
24ref|NM_001022500.1| Schizosaccharomyces pombe 972h- hypothetical... 40 9.4
25gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 9.4
26dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
27gb|AC099518.3| Homo sapiens chromosome 16 clone RP11-626G11, com... 40 9.4
28gb|AC123542.4| Lemur catta clone LB2-136L13, complete sequence 40 9.4
29gb|AC146595.2| Mus musculus BAC clone RP24-164G18 from chromosom... 40 9.4
30dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
31dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
32gb|AC134246.4| Mus musculus BAC clone RP23-199B2 from 3, complet... 40 9.4
33dbj|AP006431.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 9.4
34emb|AL513345.20| Mouse DNA sequence from clone RP23-129N7 on chr... 40 9.4

>dbj|AK100322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079H12, full
            insert sequence
          Length = 3026

 Score =  305 bits (154), Expect = 1e-79
 Identities = 265/302 (87%)
 Strand = Plus / Minus

                                                                        
Query: 368  tcgccgctcgtgtccgttagtatcgtcagcctacgcgccgtcttcgtgaagtcgctgaaa 427
            |||||||| || || ||||||||  ||||||||||||||||||||||||| |||||||||
Sbjct: 2716 tcgccgcttgtatctgttagtatattcagcctacgcgccgtcttcgtgaactcgctgaaa 2657

                                                                        
Query: 428  ggttcatctccagtgtgtttgagcgccccggctgcatcacggtagaaaacatggctcatc 487
            ||||||||||||||||| ||||| ||||| || |||||||||||||||||||| ||||||
Sbjct: 2656 ggttcatctccagtgtgcttgagtgccccagccgcatcacggtagaaaacatgactcatc 2597

                                                                        
Query: 488  agctcagctttttccataccgaacatgtcggaaagccgccgatataactcttcatacgag 547
            ||||||||||| || || ||||||||||| | ||||||||| ||||| || ||||| || 
Sbjct: 2596 agctcagctttctcgatgccgaacatgtcagcaagccgccggtataattcctcatatgaa 2537

                                                                        
Query: 548  ccaacagctgtaagatcaagtgtgcgcccgacgtcttctgattgcatgaatatcttgcag 607
            |||||| | |  |||||||||||||||||||| || || || |||||||||| |||||||
Sbjct: 2536 ccaacaacagagagatcaagtgtgcgcccgacatcctccgactgcatgaataccttgcag 2477

                                                                        
Query: 608  tgcccgatatccagcccgagatcgagtaccttgttgtcctggcacaatggaactcctcca 667
            |||||  | |||||||| | ||| |||||||||||||| |||||||||||||||||||||
Sbjct: 2476 tgccctgtttccagcccaacatcaagtaccttgttgtcttggcacaatggaactcctcca 2417

              
Query: 668  ca 669
            ||
Sbjct: 2416 ca 2415



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>dbj|AB071299.1| Oryza sativa OsARF10 mRNA for auxin response factor 10, partial cds
          Length = 2100

 Score =  305 bits (154), Expect = 1e-79
 Identities = 265/302 (87%)
 Strand = Plus / Minus

                                                                        
Query: 368  tcgccgctcgtgtccgttagtatcgtcagcctacgcgccgtcttcgtgaagtcgctgaaa 427
            |||||||| || || ||||||||  ||||||||||||||||||||||||| |||||||||
Sbjct: 2087 tcgccgcttgtatctgttagtatattcagcctacgcgccgtcttcgtgaactcgctgaaa 2028

                                                                        
Query: 428  ggttcatctccagtgtgtttgagcgccccggctgcatcacggtagaaaacatggctcatc 487
            ||||||||||||||||| ||||| ||||| || |||||||||||||||||||| ||||||
Sbjct: 2027 ggttcatctccagtgtgcttgagtgccccagccgcatcacggtagaaaacatgactcatc 1968

                                                                        
Query: 488  agctcagctttttccataccgaacatgtcggaaagccgccgatataactcttcatacgag 547
            ||||||||||| || || ||||||||||| | ||||||||| ||||| || ||||| || 
Sbjct: 1967 agctcagctttctcgatgccgaacatgtcagcaagccgccggtataattcctcatatgaa 1908

                                                                        
Query: 548  ccaacagctgtaagatcaagtgtgcgcccgacgtcttctgattgcatgaatatcttgcag 607
            |||||| | |  |||||||||||||||||||| || || || |||||||||| |||||||
Sbjct: 1907 ccaacaacagagagatcaagtgtgcgcccgacatcctccgactgcatgaataccttgcag 1848

                                                                        
Query: 608  tgcccgatatccagcccgagatcgagtaccttgttgtcctggcacaatggaactcctcca 667
            |||||  | |||||||| | ||| |||||||||||||| |||||||||||||||||||||
Sbjct: 1847 tgccctgtttccagcccaacatcaagtaccttgttgtcttggcacaatggaactcctcca 1788

              
Query: 668  ca 669
            ||
Sbjct: 1787 ca 1786



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  246 bits (124), Expect = 8e-62
 Identities = 217/248 (87%)
 Strand = Plus / Minus

                                                                            
Query: 422      ctgaaaggttcatctccagtgtgtttgagcgccccggctgcatcacggtagaaaacatgg 481
                ||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||| 
Sbjct: 28205652 ctgaaaggttcatctccagtgtgcttgagtgccccagccgcatcacggtagaaaacatga 28205593

                                                                            
Query: 482      ctcatcagctcagctttttccataccgaacatgtcggaaagccgccgatataactcttca 541
                ||||||||||||||||| || || ||||||||||| | ||||||||| ||||| || |||
Sbjct: 28205592 ctcatcagctcagctttctcgatgccgaacatgtcagcaagccgccggtataattcctca 28205533

                                                                            
Query: 542      tacgagccaacagctgtaagatcaagtgtgcgcccgacgtcttctgattgcatgaatatc 601
                || || |||||| | |  |||||||||||||||||||| || || || |||||||||| |
Sbjct: 28205532 tatgaaccaacaacagagagatcaagtgtgcgcccgacatcctccgactgcatgaatacc 28205473

                                                                            
Query: 602      ttgcagtgcccgatatccagcccgagatcgagtaccttgttgtcctggcacaatggaact 661
                |||||||||||  | |||||||| | ||| |||||||||||||| |||||||||||||||
Sbjct: 28205472 ttgcagtgccctgtttccagcccaacatcaagtaccttgttgtcttggcacaatggaact 28205413

                        
Query: 662      cctccaca 669
                ||||||||
Sbjct: 28205412 cctccaca 28205405



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                         
Query: 368      tcgccgctcgtgtccgttagtatcgtcagcctacgcgccgtcttcgtgaagtcgctg 424
                |||||||| || || ||||||||  ||||||||||||||||||||||||| ||||||
Sbjct: 28206242 tcgccgcttgtatctgttagtatattcagcctacgcgccgtcttcgtgaactcgctg 28206186



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>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0623A10
          Length = 156517

 Score =  246 bits (124), Expect = 8e-62
 Identities = 217/248 (87%)
 Strand = Plus / Minus

                                                                        
Query: 422  ctgaaaggttcatctccagtgtgtttgagcgccccggctgcatcacggtagaaaacatgg 481
            ||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||| 
Sbjct: 3681 ctgaaaggttcatctccagtgtgcttgagtgccccagccgcatcacggtagaaaacatga 3622

                                                                        
Query: 482  ctcatcagctcagctttttccataccgaacatgtcggaaagccgccgatataactcttca 541
            ||||||||||||||||| || || ||||||||||| | ||||||||| ||||| || |||
Sbjct: 3621 ctcatcagctcagctttctcgatgccgaacatgtcagcaagccgccggtataattcctca 3562

                                                                        
Query: 542  tacgagccaacagctgtaagatcaagtgtgcgcccgacgtcttctgattgcatgaatatc 601
            || || |||||| | |  |||||||||||||||||||| || || || |||||||||| |
Sbjct: 3561 tatgaaccaacaacagagagatcaagtgtgcgcccgacatcctccgactgcatgaatacc 3502

                                                                        
Query: 602  ttgcagtgcccgatatccagcccgagatcgagtaccttgttgtcctggcacaatggaact 661
            |||||||||||  | |||||||| | ||| |||||||||||||| |||||||||||||||
Sbjct: 3501 ttgcagtgccctgtttccagcccaacatcaagtaccttgttgtcttggcacaatggaact 3442

                    
Query: 662  cctccaca 669
            ||||||||
Sbjct: 3441 cctccaca 3434



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                     
Query: 368  tcgccgctcgtgtccgttagtatcgtcagcctacgcgccgtcttcgtgaagtcgctg 424
            |||||||| || || ||||||||  ||||||||||||||||||||||||| ||||||
Sbjct: 4271 tcgccgcttgtatctgttagtatattcagcctacgcgccgtcttcgtgaactcgctg 4215



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>dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0009H10
          Length = 175754

 Score =  246 bits (124), Expect = 8e-62
 Identities = 217/248 (87%)
 Strand = Plus / Minus

                                                                          
Query: 422    ctgaaaggttcatctccagtgtgtttgagcgccccggctgcatcacggtagaaaacatgg 481
              ||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||| 
Sbjct: 136558 ctgaaaggttcatctccagtgtgcttgagtgccccagccgcatcacggtagaaaacatga 136499

                                                                          
Query: 482    ctcatcagctcagctttttccataccgaacatgtcggaaagccgccgatataactcttca 541
              ||||||||||||||||| || || ||||||||||| | ||||||||| ||||| || |||
Sbjct: 136498 ctcatcagctcagctttctcgatgccgaacatgtcagcaagccgccggtataattcctca 136439

                                                                          
Query: 542    tacgagccaacagctgtaagatcaagtgtgcgcccgacgtcttctgattgcatgaatatc 601
              || || |||||| | |  |||||||||||||||||||| || || || |||||||||| |
Sbjct: 136438 tatgaaccaacaacagagagatcaagtgtgcgcccgacatcctccgactgcatgaatacc 136379

                                                                          
Query: 602    ttgcagtgcccgatatccagcccgagatcgagtaccttgttgtcctggcacaatggaact 661
              |||||||||||  | |||||||| | ||| |||||||||||||| |||||||||||||||
Sbjct: 136378 ttgcagtgccctgtttccagcccaacatcaagtaccttgttgtcttggcacaatggaact 136319

                      
Query: 662    cctccaca 669
              ||||||||
Sbjct: 136318 cctccaca 136311



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                       
Query: 368    tcgccgctcgtgtccgttagtatcgtcagcctacgcgccgtcttcgtgaagtcgctg 424
              |||||||| || || ||||||||  ||||||||||||||||||||||||| ||||||
Sbjct: 137148 tcgccgcttgtatctgttagtatattcagcctacgcgccgtcttcgtgaactcgctg 137092



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>gb|AF040648.2| Caenorhabditis elegans fosmid H19M22, complete sequence
          Length = 44699

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 153   tctaataatcggagaaaaactg 174
             ||||||||||||||||||||||
Sbjct: 18426 tctaataatcggagaaaaactg 18405



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>gb|AC116502.11| Mus musculus chromosome 13, clone RP24-300G17, complete sequence
          Length = 170654

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 50     ttactactactacatcatcataatgggta 78
              |||||||||||||| |||||| |||||||
Sbjct: 109904 ttactactactacaacatcattatgggta 109932



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>gb|AC091010.5| Homo sapiens chromosome 8, clone RP11-680F23, complete sequence
          Length = 186881

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 77    taccagccaacacaacgaaagaaagaaaa 105
             |||||||||| |||| |||||||||||||
Sbjct: 96787 taccagccaaaacaaggaaagaaagaaaa 96759



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>ref|NM_170949.2| Caenorhabditis elegans Enhancer of Ksr-1 Lethality family member
            (ekl-4) (ekl-4) mRNA, complete cds
          Length = 1697

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 50   ttactactactacatcatcat 70
            |||||||||||||||||||||
Sbjct: 1370 ttactactactacatcatcat 1390



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>emb|AL132876.4|CEY105E8A Caenorhabditis elegans YAC Y105E8A, complete sequence
          Length = 277607

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 50     ttactactactacatcatcat 70
              |||||||||||||||||||||
Sbjct: 143234 ttactactactacatcatcat 143254



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>emb|BX000344.15| Mouse DNA sequence from clone RP24-88L6 on chromosome 2, complete
             sequence
          Length = 118767

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 94    aaagaaagaaaagtgtccaaggatc 118
             |||||||||||| ||||||||||||
Sbjct: 24496 aaagaaagaaaaatgtccaaggatc 24472



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>ref|XM_634067.1| Dictyostelium discoideum hypothetical protein (DDB0185452), partial
           mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 51  tactactactacatcatcat 70
           ||||||||||||||||||||
Sbjct: 885 tactactactacatcatcat 904



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>ref|XM_628881.1| Dictyostelium discoideum putative STE20 family protein kinase
            (DDB0229414), partial mRNA
          Length = 2781

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 51   tactactactacatcatcat 70
            ||||||||||||||||||||
Sbjct: 1728 tactactactacatcatcat 1747



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>gb|AC122893.6| Mus musculus BAC clone RP23-67C3 from chromosome 17, complete sequence
          Length = 206456

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     aaagaaagaaaagtgtccaa 113
              ||||||||||||||||||||
Sbjct: 104014 aaagaaagaaaagtgtccaa 103995



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>ref|XM_586753.2| PREDICTED: Bos taurus similar to sacsin (LOC539378), mRNA
          Length = 13728

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   ttcagcaaggagaaccgcca 32
            ||||||||||||||||||||
Sbjct: 5550 ttcagcaaggagaaccgcca 5531



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>gb|AY812171.1| Schistosoma japonicum SJCHGC04041 protein mRNA, partial cds
          Length = 664

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 51  tactactactacatcatcat 70
           ||||||||||||||||||||
Sbjct: 521 tactactactacatcatcat 540



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>gb|AC127377.4| Mus musculus BAC clone RP23-51N3 from chromosome 3, complete sequence
          Length = 195767

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 81    agccaacacaacgaaagaaagaaa 104
             ||||||||||| ||||||||||||
Sbjct: 59833 agccaacacaaagaaagaaagaaa 59856



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>ref|XM_744718.1| Aspergillus fumigatus Af293 CPSF subunit A (Afu1g00590) partial mRNA
          Length = 3789

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 518  gaaagccgccgatataactcttca 541
            |||||||| |||||||||||||||
Sbjct: 3773 gaaagccggcgatataactcttca 3750



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>gb|AC104323.27| Mus musculus strain C57BL/6J chromosome 17 clone rp23-114o8 map 17,
             complete sequence
          Length = 202430

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    aaagaaagaaaagtgtccaa 113
             ||||||||||||||||||||
Sbjct: 37575 aaagaaagaaaagtgtccaa 37556



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>emb|Z97204.1|SPBC31F10 S.pombe chromosome II cosmid c31F10
          Length = 36444

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   gtacaagtggcgaaagagct 330
             ||||||||||||||||||||
Sbjct: 33863 gtacaagtggcgaaagagct 33844



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>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 202    gacttgcatccaggccgcgg 221
              ||||||||||||||||||||
Sbjct: 327623 gacttgcatccaggccgcgg 327604



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>emb|AL928772.8| Mouse DNA sequence from clone RP23-247I15 on chromosome 4 Contains the 3'
              end of a novel gene and a novel gene, complete sequence
          Length = 174731

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    gaaaaactgaagctgcctgc 185
              ||||||||||||||||||||
Sbjct: 146098 gaaaaactgaagctgcctgc 146117



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>gb|DP000004.1| Lemur catta target 1 genomic scaffold
          Length = 1399362

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 324    aagagcttgcttccttcctc 343
              ||||||||||||||||||||
Sbjct: 730474 aagagcttgcttccttcctc 730455



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>ref|NM_001022500.1| Schizosaccharomyces pombe 972h- hypothetical protein
           (SPBC31F10.17c), partial mRNA
          Length = 408

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 311 gtacaagtggcgaaagagct 330
           ||||||||||||||||||||
Sbjct: 118 gtacaagtggcgaaagagct 137



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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 660     ctcctccacagggacaagtt 679
               ||||||||||||||||||||
Sbjct: 5356266 ctcctccacagggacaagtt 5356247



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 26       accgccatggattccaagcc 45
                ||||||||||||||||||||
Sbjct: 33086505 accgccatggattccaagcc 33086486



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>gb|AC099518.3| Homo sapiens chromosome 16 clone RP11-626G11, complete sequence
          Length = 216264

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    gaaaaactgaagctgcctgc 185
              ||||||||||||||||||||
Sbjct: 168486 gaaaaactgaagctgcctgc 168467



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>gb|AC123542.4| Lemur catta clone LB2-136L13, complete sequence
          Length = 158703

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   aagagcttgcttccttcctc 343
             ||||||||||||||||||||
Sbjct: 73910 aagagcttgcttccttcctc 73891



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>gb|AC146595.2| Mus musculus BAC clone RP24-164G18 from chromosome 17, complete
             sequence
          Length = 132103

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   agaaaaactgaagctgcctg 184
             ||||||||||||||||||||
Sbjct: 20585 agaaaaactgaagctgcctg 20604



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>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1293_A01
          Length = 139121

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     accgccatggattccaagcc 45
              ||||||||||||||||||||
Sbjct: 132445 accgccatggattccaagcc 132426



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>dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1369_G08
          Length = 104190

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 26   accgccatggattccaagcc 45
            ||||||||||||||||||||
Sbjct: 2165 accgccatggattccaagcc 2146



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>gb|AC134246.4| Mus musculus BAC clone RP23-199B2 from 3, complete sequence
          Length = 206439

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 81     agccaacacaacgaaagaaagaaa 104
              ||||||||||| ||||||||||||
Sbjct: 185502 agccaacacaaagaaagaaagaaa 185525



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>dbj|AP006431.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT38F20, TM0328,
             complete sequence
          Length = 119346

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    acaacgaaagaaagaaaagt 107
             ||||||||||||||||||||
Sbjct: 96893 acaacgaaagaaagaaaagt 96912



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>emb|AL513345.20| Mouse DNA sequence from clone RP23-129N7 on chromosome 15, complete
              sequence
          Length = 217225

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     tactactactacatcatcat 70
              ||||||||||||||||||||
Sbjct: 149336 tactactactacatcatcat 149355


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,607,681
Number of Sequences: 3902068
Number of extensions: 6607681
Number of successful extensions: 141855
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 141644
Number of HSP's gapped (non-prelim): 211
length of query: 684
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 661
effective length of database: 17,143,297,704
effective search space: 11331719782344
effective search space used: 11331719782344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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