Clone Name | rbasd18n09 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK100322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079H12, full insert sequence Length = 3026 Score = 305 bits (154), Expect = 1e-79 Identities = 265/302 (87%) Strand = Plus / Minus Query: 368 tcgccgctcgtgtccgttagtatcgtcagcctacgcgccgtcttcgtgaagtcgctgaaa 427 |||||||| || || |||||||| ||||||||||||||||||||||||| ||||||||| Sbjct: 2716 tcgccgcttgtatctgttagtatattcagcctacgcgccgtcttcgtgaactcgctgaaa 2657 Query: 428 ggttcatctccagtgtgtttgagcgccccggctgcatcacggtagaaaacatggctcatc 487 ||||||||||||||||| ||||| ||||| || |||||||||||||||||||| |||||| Sbjct: 2656 ggttcatctccagtgtgcttgagtgccccagccgcatcacggtagaaaacatgactcatc 2597 Query: 488 agctcagctttttccataccgaacatgtcggaaagccgccgatataactcttcatacgag 547 ||||||||||| || || ||||||||||| | ||||||||| ||||| || ||||| || Sbjct: 2596 agctcagctttctcgatgccgaacatgtcagcaagccgccggtataattcctcatatgaa 2537 Query: 548 ccaacagctgtaagatcaagtgtgcgcccgacgtcttctgattgcatgaatatcttgcag 607 |||||| | | |||||||||||||||||||| || || || |||||||||| ||||||| Sbjct: 2536 ccaacaacagagagatcaagtgtgcgcccgacatcctccgactgcatgaataccttgcag 2477 Query: 608 tgcccgatatccagcccgagatcgagtaccttgttgtcctggcacaatggaactcctcca 667 ||||| | |||||||| | ||| |||||||||||||| ||||||||||||||||||||| Sbjct: 2476 tgccctgtttccagcccaacatcaagtaccttgttgtcttggcacaatggaactcctcca 2417 Query: 668 ca 669 || Sbjct: 2416 ca 2415
>dbj|AB071299.1| Oryza sativa OsARF10 mRNA for auxin response factor 10, partial cds Length = 2100 Score = 305 bits (154), Expect = 1e-79 Identities = 265/302 (87%) Strand = Plus / Minus Query: 368 tcgccgctcgtgtccgttagtatcgtcagcctacgcgccgtcttcgtgaagtcgctgaaa 427 |||||||| || || |||||||| ||||||||||||||||||||||||| ||||||||| Sbjct: 2087 tcgccgcttgtatctgttagtatattcagcctacgcgccgtcttcgtgaactcgctgaaa 2028 Query: 428 ggttcatctccagtgtgtttgagcgccccggctgcatcacggtagaaaacatggctcatc 487 ||||||||||||||||| ||||| ||||| || |||||||||||||||||||| |||||| Sbjct: 2027 ggttcatctccagtgtgcttgagtgccccagccgcatcacggtagaaaacatgactcatc 1968 Query: 488 agctcagctttttccataccgaacatgtcggaaagccgccgatataactcttcatacgag 547 ||||||||||| || || ||||||||||| | ||||||||| ||||| || ||||| || Sbjct: 1967 agctcagctttctcgatgccgaacatgtcagcaagccgccggtataattcctcatatgaa 1908 Query: 548 ccaacagctgtaagatcaagtgtgcgcccgacgtcttctgattgcatgaatatcttgcag 607 |||||| | | |||||||||||||||||||| || || || |||||||||| ||||||| Sbjct: 1907 ccaacaacagagagatcaagtgtgcgcccgacatcctccgactgcatgaataccttgcag 1848 Query: 608 tgcccgatatccagcccgagatcgagtaccttgttgtcctggcacaatggaactcctcca 667 ||||| | |||||||| | ||| |||||||||||||| ||||||||||||||||||||| Sbjct: 1847 tgccctgtttccagcccaacatcaagtaccttgttgtcttggcacaatggaactcctcca 1788 Query: 668 ca 669 || Sbjct: 1787 ca 1786
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 246 bits (124), Expect = 8e-62 Identities = 217/248 (87%) Strand = Plus / Minus Query: 422 ctgaaaggttcatctccagtgtgtttgagcgccccggctgcatcacggtagaaaacatgg 481 ||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||| Sbjct: 28205652 ctgaaaggttcatctccagtgtgcttgagtgccccagccgcatcacggtagaaaacatga 28205593 Query: 482 ctcatcagctcagctttttccataccgaacatgtcggaaagccgccgatataactcttca 541 ||||||||||||||||| || || ||||||||||| | ||||||||| ||||| || ||| Sbjct: 28205592 ctcatcagctcagctttctcgatgccgaacatgtcagcaagccgccggtataattcctca 28205533 Query: 542 tacgagccaacagctgtaagatcaagtgtgcgcccgacgtcttctgattgcatgaatatc 601 || || |||||| | | |||||||||||||||||||| || || || |||||||||| | Sbjct: 28205532 tatgaaccaacaacagagagatcaagtgtgcgcccgacatcctccgactgcatgaatacc 28205473 Query: 602 ttgcagtgcccgatatccagcccgagatcgagtaccttgttgtcctggcacaatggaact 661 ||||||||||| | |||||||| | ||| |||||||||||||| ||||||||||||||| Sbjct: 28205472 ttgcagtgccctgtttccagcccaacatcaagtaccttgttgtcttggcacaatggaact 28205413 Query: 662 cctccaca 669 |||||||| Sbjct: 28205412 cctccaca 28205405 Score = 65.9 bits (33), Expect = 2e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 368 tcgccgctcgtgtccgttagtatcgtcagcctacgcgccgtcttcgtgaagtcgctg 424 |||||||| || || |||||||| ||||||||||||||||||||||||| |||||| Sbjct: 28206242 tcgccgcttgtatctgttagtatattcagcctacgcgccgtcttcgtgaactcgctg 28206186
>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0623A10 Length = 156517 Score = 246 bits (124), Expect = 8e-62 Identities = 217/248 (87%) Strand = Plus / Minus Query: 422 ctgaaaggttcatctccagtgtgtttgagcgccccggctgcatcacggtagaaaacatgg 481 ||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||| Sbjct: 3681 ctgaaaggttcatctccagtgtgcttgagtgccccagccgcatcacggtagaaaacatga 3622 Query: 482 ctcatcagctcagctttttccataccgaacatgtcggaaagccgccgatataactcttca 541 ||||||||||||||||| || || ||||||||||| | ||||||||| ||||| || ||| Sbjct: 3621 ctcatcagctcagctttctcgatgccgaacatgtcagcaagccgccggtataattcctca 3562 Query: 542 tacgagccaacagctgtaagatcaagtgtgcgcccgacgtcttctgattgcatgaatatc 601 || || |||||| | | |||||||||||||||||||| || || || |||||||||| | Sbjct: 3561 tatgaaccaacaacagagagatcaagtgtgcgcccgacatcctccgactgcatgaatacc 3502 Query: 602 ttgcagtgcccgatatccagcccgagatcgagtaccttgttgtcctggcacaatggaact 661 ||||||||||| | |||||||| | ||| |||||||||||||| ||||||||||||||| Sbjct: 3501 ttgcagtgccctgtttccagcccaacatcaagtaccttgttgtcttggcacaatggaact 3442 Query: 662 cctccaca 669 |||||||| Sbjct: 3441 cctccaca 3434 Score = 65.9 bits (33), Expect = 2e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 368 tcgccgctcgtgtccgttagtatcgtcagcctacgcgccgtcttcgtgaagtcgctg 424 |||||||| || || |||||||| ||||||||||||||||||||||||| |||||| Sbjct: 4271 tcgccgcttgtatctgttagtatattcagcctacgcgccgtcttcgtgaactcgctg 4215
>dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0009H10 Length = 175754 Score = 246 bits (124), Expect = 8e-62 Identities = 217/248 (87%) Strand = Plus / Minus Query: 422 ctgaaaggttcatctccagtgtgtttgagcgccccggctgcatcacggtagaaaacatgg 481 ||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||| Sbjct: 136558 ctgaaaggttcatctccagtgtgcttgagtgccccagccgcatcacggtagaaaacatga 136499 Query: 482 ctcatcagctcagctttttccataccgaacatgtcggaaagccgccgatataactcttca 541 ||||||||||||||||| || || ||||||||||| | ||||||||| ||||| || ||| Sbjct: 136498 ctcatcagctcagctttctcgatgccgaacatgtcagcaagccgccggtataattcctca 136439 Query: 542 tacgagccaacagctgtaagatcaagtgtgcgcccgacgtcttctgattgcatgaatatc 601 || || |||||| | | |||||||||||||||||||| || || || |||||||||| | Sbjct: 136438 tatgaaccaacaacagagagatcaagtgtgcgcccgacatcctccgactgcatgaatacc 136379 Query: 602 ttgcagtgcccgatatccagcccgagatcgagtaccttgttgtcctggcacaatggaact 661 ||||||||||| | |||||||| | ||| |||||||||||||| ||||||||||||||| Sbjct: 136378 ttgcagtgccctgtttccagcccaacatcaagtaccttgttgtcttggcacaatggaact 136319 Query: 662 cctccaca 669 |||||||| Sbjct: 136318 cctccaca 136311 Score = 65.9 bits (33), Expect = 2e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 368 tcgccgctcgtgtccgttagtatcgtcagcctacgcgccgtcttcgtgaagtcgctg 424 |||||||| || || |||||||| ||||||||||||||||||||||||| |||||| Sbjct: 137148 tcgccgcttgtatctgttagtatattcagcctacgcgccgtcttcgtgaactcgctg 137092
>gb|AF040648.2| Caenorhabditis elegans fosmid H19M22, complete sequence Length = 44699 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 153 tctaataatcggagaaaaactg 174 |||||||||||||||||||||| Sbjct: 18426 tctaataatcggagaaaaactg 18405
>gb|AC116502.11| Mus musculus chromosome 13, clone RP24-300G17, complete sequence Length = 170654 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 50 ttactactactacatcatcataatgggta 78 |||||||||||||| |||||| ||||||| Sbjct: 109904 ttactactactacaacatcattatgggta 109932
>gb|AC091010.5| Homo sapiens chromosome 8, clone RP11-680F23, complete sequence Length = 186881 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 77 taccagccaacacaacgaaagaaagaaaa 105 |||||||||| |||| ||||||||||||| Sbjct: 96787 taccagccaaaacaaggaaagaaagaaaa 96759
>ref|NM_170949.2| Caenorhabditis elegans Enhancer of Ksr-1 Lethality family member (ekl-4) (ekl-4) mRNA, complete cds Length = 1697 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 ttactactactacatcatcat 70 ||||||||||||||||||||| Sbjct: 1370 ttactactactacatcatcat 1390
>emb|AL132876.4|CEY105E8A Caenorhabditis elegans YAC Y105E8A, complete sequence Length = 277607 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 ttactactactacatcatcat 70 ||||||||||||||||||||| Sbjct: 143234 ttactactactacatcatcat 143254
>emb|BX000344.15| Mouse DNA sequence from clone RP24-88L6 on chromosome 2, complete sequence Length = 118767 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 94 aaagaaagaaaagtgtccaaggatc 118 |||||||||||| |||||||||||| Sbjct: 24496 aaagaaagaaaaatgtccaaggatc 24472
>ref|XM_634067.1| Dictyostelium discoideum hypothetical protein (DDB0185452), partial mRNA Length = 1542 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tactactactacatcatcat 70 |||||||||||||||||||| Sbjct: 885 tactactactacatcatcat 904
>ref|XM_628881.1| Dictyostelium discoideum putative STE20 family protein kinase (DDB0229414), partial mRNA Length = 2781 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tactactactacatcatcat 70 |||||||||||||||||||| Sbjct: 1728 tactactactacatcatcat 1747
>gb|AC122893.6| Mus musculus BAC clone RP23-67C3 from chromosome 17, complete sequence Length = 206456 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 aaagaaagaaaagtgtccaa 113 |||||||||||||||||||| Sbjct: 104014 aaagaaagaaaagtgtccaa 103995
>ref|XM_586753.2| PREDICTED: Bos taurus similar to sacsin (LOC539378), mRNA Length = 13728 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ttcagcaaggagaaccgcca 32 |||||||||||||||||||| Sbjct: 5550 ttcagcaaggagaaccgcca 5531
>gb|AY812171.1| Schistosoma japonicum SJCHGC04041 protein mRNA, partial cds Length = 664 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tactactactacatcatcat 70 |||||||||||||||||||| Sbjct: 521 tactactactacatcatcat 540
>gb|AC127377.4| Mus musculus BAC clone RP23-51N3 from chromosome 3, complete sequence Length = 195767 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 agccaacacaacgaaagaaagaaa 104 ||||||||||| |||||||||||| Sbjct: 59833 agccaacacaaagaaagaaagaaa 59856
>ref|XM_744718.1| Aspergillus fumigatus Af293 CPSF subunit A (Afu1g00590) partial mRNA Length = 3789 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 518 gaaagccgccgatataactcttca 541 |||||||| ||||||||||||||| Sbjct: 3773 gaaagccggcgatataactcttca 3750
>gb|AC104323.27| Mus musculus strain C57BL/6J chromosome 17 clone rp23-114o8 map 17, complete sequence Length = 202430 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 aaagaaagaaaagtgtccaa 113 |||||||||||||||||||| Sbjct: 37575 aaagaaagaaaagtgtccaa 37556
>emb|Z97204.1|SPBC31F10 S.pombe chromosome II cosmid c31F10 Length = 36444 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 gtacaagtggcgaaagagct 330 |||||||||||||||||||| Sbjct: 33863 gtacaagtggcgaaagagct 33844
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 gacttgcatccaggccgcgg 221 |||||||||||||||||||| Sbjct: 327623 gacttgcatccaggccgcgg 327604
>emb|AL928772.8| Mouse DNA sequence from clone RP23-247I15 on chromosome 4 Contains the 3' end of a novel gene and a novel gene, complete sequence Length = 174731 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 gaaaaactgaagctgcctgc 185 |||||||||||||||||||| Sbjct: 146098 gaaaaactgaagctgcctgc 146117
>gb|DP000004.1| Lemur catta target 1 genomic scaffold Length = 1399362 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 aagagcttgcttccttcctc 343 |||||||||||||||||||| Sbjct: 730474 aagagcttgcttccttcctc 730455
>ref|NM_001022500.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC31F10.17c), partial mRNA Length = 408 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 gtacaagtggcgaaagagct 330 |||||||||||||||||||| Sbjct: 118 gtacaagtggcgaaagagct 137
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 660 ctcctccacagggacaagtt 679 |||||||||||||||||||| Sbjct: 5356266 ctcctccacagggacaagtt 5356247
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 accgccatggattccaagcc 45 |||||||||||||||||||| Sbjct: 33086505 accgccatggattccaagcc 33086486
>gb|AC099518.3| Homo sapiens chromosome 16 clone RP11-626G11, complete sequence Length = 216264 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 gaaaaactgaagctgcctgc 185 |||||||||||||||||||| Sbjct: 168486 gaaaaactgaagctgcctgc 168467
>gb|AC123542.4| Lemur catta clone LB2-136L13, complete sequence Length = 158703 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 aagagcttgcttccttcctc 343 |||||||||||||||||||| Sbjct: 73910 aagagcttgcttccttcctc 73891
>gb|AC146595.2| Mus musculus BAC clone RP24-164G18 from chromosome 17, complete sequence Length = 132103 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 agaaaaactgaagctgcctg 184 |||||||||||||||||||| Sbjct: 20585 agaaaaactgaagctgcctg 20604
>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1293_A01 Length = 139121 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 accgccatggattccaagcc 45 |||||||||||||||||||| Sbjct: 132445 accgccatggattccaagcc 132426
>dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1369_G08 Length = 104190 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 accgccatggattccaagcc 45 |||||||||||||||||||| Sbjct: 2165 accgccatggattccaagcc 2146
>gb|AC134246.4| Mus musculus BAC clone RP23-199B2 from 3, complete sequence Length = 206439 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 agccaacacaacgaaagaaagaaa 104 ||||||||||| |||||||||||| Sbjct: 185502 agccaacacaaagaaagaaagaaa 185525
>dbj|AP006431.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT38F20, TM0328, complete sequence Length = 119346 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 acaacgaaagaaagaaaagt 107 |||||||||||||||||||| Sbjct: 96893 acaacgaaagaaagaaaagt 96912
>emb|AL513345.20| Mouse DNA sequence from clone RP23-129N7 on chromosome 15, complete sequence Length = 217225 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tactactactacatcatcat 70 |||||||||||||||||||| Sbjct: 149336 tactactactacatcatcat 149355 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,607,681 Number of Sequences: 3902068 Number of extensions: 6607681 Number of successful extensions: 141855 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 141644 Number of HSP's gapped (non-prelim): 211 length of query: 684 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 661 effective length of database: 17,143,297,704 effective search space: 11331719782344 effective search space used: 11331719782344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)