>TRUA_SYNEL (Q8CWM6) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 284

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 45  HTHGWVVQMGKRTDRETKTQDISTTYNSP 131
           H HGW  Q+G+RT +E   Q I++  N P
Sbjct: 24  HFHGWQRQVGQRTVQEVIEQAIASVVNHP 52

>TRSF_DROSI (Q24669) Female-specific protein transformer|
          Length = 184

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +2

Query: 83  RSRDQNSRHKHYIQFSRSTNSSK---IYRGRREESSRPLRTAPTLFVLYTQM 229
           +S D+ SRH+ + Q SRS N S+     R RR+ S       P +   Y Q+
Sbjct: 78  QSSDRGSRHRRHRQRSRSRNRSRSRSSERRRRQRSPHRYNPPPKIINYYVQV 129

>S35B3_CAEBR (Q61LC0) Solute carrier family 35 member B3 homolog|
          Length = 363

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = -2

Query: 191 VTDGCSPPSC----RGKSLMSWLIWRIVCSAYVLSFGLSICTFPHLYNPSMCMLLCNKII 24
           +  GC    C      K ++ W I+ ++    V + GLS  +  +L  P+  +  C K+I
Sbjct: 83  IYSGCGYAECAVWHNTKRMIPWRIYGVIAFFTVATMGLSNASVGYLNYPTQVIFKCCKLI 142

Query: 23  NIV 15
            ++
Sbjct: 143 PVL 145

>S35B3_CAEEL (Q20787) Solute carrier family 35 member B3 homolog|
          Length = 364

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = -2

Query: 191 VTDGCSPPSC----RGKSLMSWLIWRIVCSAYVLSFGLSICTFPHLYNPSMCMLLCNKII 24
           +  GC    C      K ++ W I+ ++    V + GLS  +  +L  P+  +  C K+I
Sbjct: 83  IYSGCGYTECIIWHNTKRMIPWRIYGVIAFFTVATMGLSNASVGYLNYPTQVIFKCCKLI 142

Query: 23  NIV 15
            ++
Sbjct: 143 PVL 145

>YCC3_YEAST (P25563) Hypothetical 13.5 kDa protein in AGP1-LEU2 intergenic|
           region
          Length = 115

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 90  LDLYVSPSVQPIHVYVTLQ*NHQHCAIVAY 1
           L +YVS  ++PIHVY TL      C I  Y
Sbjct: 50  LVIYVSTIIKPIHVYCTLYYAILRCCIQIY 79

>TRSF_DROER (Q23935) Female-specific protein transformer|
          Length = 178

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 83  RSRDQNSRHKHYIQFSRSTNSSKIYRGRREESSRPLRTAPTLFVLYTQM 229
           RS+  + RH+H  +    + S    R RR+ S R     P +   Y Q+
Sbjct: 75  RSQSSDRRHRHRSRSRNRSRSRSSERRRRQRSPRRYNPPPKIINYYLQV 123


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,374,687
Number of Sequences: 219361
Number of extensions: 732449
Number of successful extensions: 1750
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1750
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)