ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A) 37 0.083
2TCB1_RABIT (P06333) T-cell receptor beta chain ANA 11 36 0.14
3VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B) 33 1.2
4LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain L... 33 1.2
5MST2_DROHY (Q08696) Axoneme-associated protein mst101(2) 32 1.6
6NPT2B_MOUSE (Q9DBP0) Sodium-dependent phosphate transport protei... 31 4.6
7VCL_THECC (Q43358) Vicilin precursor 31 4.6
8NPT2B_RAT (Q9JJ09) Sodium-dependent phosphate transport protein ... 31 4.6
9CR023_HUMAN (Q8NB54) Protein C18orf23 30 6.0
10ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disinteg... 30 6.0

>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)|
          Length = 605

 Score = 36.6 bits (83), Expect = 0.083
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
 Frame = -2

Query: 640 RPHAEEV----------EVDDQSNDSCDHKCQ-HHKVPARKKQCVDECHRREHHHPSRAA 494
           RPH E+           +  D+    C  +CQ   + P RK+QCV EC  +    P +  
Sbjct: 99  RPHCEQSCREQYEKQQQQQPDKQFKECQQRCQWQEQRPERKQQCVKECREQYQEDPWKGE 158

Query: 493 CERKCSHWRDPTRKE 449
            E K   WR+   +E
Sbjct: 159 RENK---WREEEEEE 170



 Score = 30.8 bits (68), Expect = 4.6
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
 Frame = -2

Query: 592 CDHKCQHHKVPAR---KKQCVDECHRREHHHPSRA--ACERKCSHWRD--PTRKERCVQT 434
           C   CQ  +   R   ++ C ++  +++   P +    C+++C  W++  P RK++CV+ 
Sbjct: 87  CRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQ-WQEQRPERKQQCVKE 145

Query: 433 C 431
           C
Sbjct: 146 C 146



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>TCB1_RABIT (P06333) T-cell receptor beta chain ANA 11|
          Length = 319

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 2   HTHTHYITHACIHTRTHTHAAL 67
           HTH H  TH CIHT T TH  +
Sbjct: 72  HTHIHASTHVCIHTHTFTHLCI 93



 Score = 31.6 bits (70), Expect = 2.7
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +2

Query: 8   HTHYITHACIHTRTHTHAALASSC 79
           HTH  TH CIHT TH   AL  +C
Sbjct: 84  HTHTFTHLCIHTLTH---ALTLTC 104



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>VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B)|
          Length = 588

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -2

Query: 646 IERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERK 482
           ++R   E+ +   Q  +   H  Q  + P RK+QCV EC  R   +P R   E +
Sbjct: 110 LKRFEQEQQQSQRQFQECQQHCHQQEQRPERKQQCVRECRERYQENPWRREREEE 164



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>LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3)|
          Length = 367

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 71  SSCGKHT*QTNLLKEGKGTEFHGALF*ERHRQSCCYCKLLVFYSHAFAVIASKTYTRAY 247
           S CG+H   T+ ++  KG  +H A F      +C  CK  +     FA++  K   R +
Sbjct: 158 SRCGRHIHSTDWVRRAKGNVYHLACF------ACFSCKRQLSTGEEFALVEEKVLCRVH 210



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>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)|
          Length = 1391

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = -2

Query: 592  CDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCVQTCMR 425
            C+ + +  K  A KK+C +E  +RE     +  C       ++ T K++C +   +
Sbjct: 1112 CEERAKKEKEAAEKKRC-EEAAKREKEAAEKKKCAEAAKKEKEATEKQKCAEAAKK 1166



 Score = 31.6 bits (70), Expect = 2.7
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
 Frame = -2

Query: 652  DVIERPHAEE---VEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERK 482
            +  E+   EE    E +      C+ + +  K  A KKQC +E  ++E     +  CE  
Sbjct: 1073 EAAEKKQCEERAKKEKEAAEKKQCEERAKKLKEAAEKKQC-EERAKKEKEAAEKKRCEEA 1131

Query: 481  CSHWRDPTRKERCVQTCMR 425
                ++   K++C +   +
Sbjct: 1132 AKREKEAAEKKKCAEAAKK 1150



 Score = 30.0 bits (66), Expect = 7.8
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = -2

Query: 631 AEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRK 452
           A + E +      C+   ++ K  A KK+C  E  ++E     R  CE      +    K
Sbjct: 418 AAKKEKEAAERKKCEELAKNIKKAAEKKKC-KEAAKKEKEAAERKKCEELAKKIKKAAEK 476

Query: 451 ERCVQTCMR 425
           ++C +T  +
Sbjct: 477 KKCEETAKK 485



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>NPT2B_MOUSE (Q9DBP0) Sodium-dependent phosphate transport protein 2B|
           (Sodium/phosphate cotransporter 2B) (Na(+)/Pi
           cotransporter 2B) (Sodium-phosphate transport protein
           2B) (Na(+)-dependent phosphate cotransporter 2B)
           (NaPi-2b) (Solute carrier family 34
          Length = 697

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 66  RAACVCVRVCIHACVM*CVCVC 1
           R  C C RVC   C M C C C
Sbjct: 616 RRCCCCCRVCCRVCCMVCGCKC 637



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>VCL_THECC (Q43358) Vicilin precursor|
          Length = 525

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
 Frame = -2

Query: 628 EEVEVDDQSNDSCDHKC----------QHHKVPARKKQCVDECHRREHHHPSRAACERKC 479
           E    +++  + C+ +C          Q  ++  + +QC   C  ++     +  C+RKC
Sbjct: 50  ESEATEEREQEQCEQRCEREYKEQQRQQEEELQRQYQQCQGRCQEQQQGQREQQQCQRKC 109

Query: 478 SHWRDPTRKER 446
             W     +ER
Sbjct: 110 --WEQYKEQER 118



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>NPT2B_RAT (Q9JJ09) Sodium-dependent phosphate transport protein 2B|
           (Sodium/phosphate cotransporter 2B) (Na(+)/Pi
           cotransporter 2B) (Sodium-phosphate transport protein
           2B) (Na(+)-dependent phosphate cotransporter 2B)
           (NaPi-2b) (Solute carrier family 34 me
          Length = 695

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 66  RAACVCVRVCIHACVM*CVCVC 1
           R  C C RVC   C M C C C
Sbjct: 616 RRCCCCCRVCCRVCCMVCGCKC 637



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>CR023_HUMAN (Q8NB54) Protein C18orf23|
          Length = 160

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 60  ACVCVRVCIHACVM*CVC 7
           ACVCV VC++ CV  C C
Sbjct: 57  ACVCVCVCLYVCVHVCEC 74



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>ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 19) (Meltrin beta)
           (Metalloprotease and disintegrin dentritic antigen
           marker) (MADDAM)
          Length = 956

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +3

Query: 114 KEKEQSSMELSSRRGIANHAATASYWSFILTPLPS*LARRIRGRIYRSVYTR 269
           +E E SS+ LS+ RGI      +S  S+++ PLP    + +   IYRS + +
Sbjct: 121 RETELSSVTLSTCRGIRGLITVSSNLSYVIEPLPDSKGQHL---IYRSEHLK 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,495,393
Number of Sequences: 219361
Number of extensions: 1562736
Number of successful extensions: 5149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5108
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7706249192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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