>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA
           sequence
          Length = 770

 Score =  121 bits (61), Expect = 3e-24
 Identities = 110/127 (86%)
 Strand = Plus / Minus

                                                                       
Query: 434 gatccaagcacaatgtctatgacgatgactttccctcctgcttcacgtggaggaacggcc 493
           ||||||||||| |||||||||| ||| ||||| |||||   ||| || | ||| | ||||
Sbjct: 334 gatccaagcactatgtctatgatgatcacttttcctcccatttctcgggaaggtatggcc 275

                                                                       
Query: 494 ttcctgcattgtgcgaggatcttgatgcaatcctngtcgctncagaagtgcagaacaagc 553
           ||| ||||||| |||||||||||||||||||||| |||||| |||||||| |||||||||
Sbjct: 274 ttcttgcattgagcgaggatcttgatgcaatcctcgtcgctccagaagtgtagaacaagc 215

                  
Query: 554 ttgagca 560
           |||||||
Sbjct: 214 ttgagca 208



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                       
Query: 251 caaccttatggatagacctcaatgacagctngagctcccagcttcttgacaatcttatag 310
           |||||||||||||||||||| |||||| || ||   || || ||||||||||||||||||
Sbjct: 517 caaccttatggatagacctcgatgacacctcgatggccaagtttcttgacaatcttatag 458

>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0097K08 map C827S, complete sequence
          Length = 137870

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                         
Query: 258   atggatagacctcaatgacagctngagctcccagcttcttgacaatcttatagccactga 317
             ||||||||||||| |  |||||| ||||||| ||||||||| | ||||||||| ||||||
Sbjct: 45028 atggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagtcactga 44969

                    
Query: 318   agccagc 324
             | |||||
Sbjct: 44968 atccagc 44962

>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0026P08 map near C827S, complete sequence
          Length = 148676

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                         
Query: 258   atggatagacctcaatgacagctngagctcccagcttcttgacaatcttatagccactga 317
             ||||||||||||| |  |||||| ||||||| ||||||||| | ||||||||| ||||||
Sbjct: 50747 atggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagtcactga 50806

                    
Query: 318   agccagc 324
             | |||||
Sbjct: 50807 atccagc 50813

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                           
Query: 258     atggatagacctcaatgacagctngagctcccagcttcttgacaatcttatagccactga 317
               ||||||||||||| |  |||||| ||||||| ||||||||| | ||||||||| ||||||
Sbjct: 7137527 atggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagtcactga 7137586

                      
Query: 318     agccagc 324
               | |||||
Sbjct: 7137587 atccagc 7137593



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 54/61 (88%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                            
Query: 261      gatagacctcaatgacagctngagctcccagcttcttgacaatcttatagccactgaagc 320
                ||||||||||||  | |||| |||||||||| ||||| |||||||||||| |||||||||
Sbjct: 11352004 gatagacctcaaatatagctcgagctcccag-ttcttcacaatcttatagtcactgaagc 11352062

                 
Query: 321      c 321
                |
Sbjct: 11352063 c 11352063



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                          
Query: 261      gatagacctcaatgacagctngagctcccagcttcttgacaatcttatagccactgaa 318
                |||||||||| | ||||||| |||| || || ||||| |||||||||||| |||||||
Sbjct: 11549315 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaa 11549372



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                   
Query: 260      ggatagacctcaatgacagctngagctcccagcttcttgacaatcttatag 310
                ||||||||||||| ||||||| |||||| ||  || || ||||||||||||
Sbjct: 11329598 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatag 11329648

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                           
Query: 258     atggatagacctcaatgacagctngagctcccagcttcttgacaatcttatagccactga 317
               ||||||||||||| |  |||||| ||||||| ||||||||| | ||||||||| ||||||
Sbjct: 7203498 atggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagtcactga 7203557

                      
Query: 318     agccagc 324
               | |||||
Sbjct: 7203558 atccagc 7203564



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 54/61 (88%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                            
Query: 261      gatagacctcaatgacagctngagctcccagcttcttgacaatcttatagccactgaagc 320
                ||||||||||||  | |||| |||||||||| ||||| |||||||||||| |||||||||
Sbjct: 11431193 gatagacctcaaatatagctcgagctcccag-ttcttcacaatcttatagtcactgaagc 11431251

                 
Query: 321      c 321
                |
Sbjct: 11431252 c 11431252



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                          
Query: 261      gatagacctcaatgacagctngagctcccagcttcttgacaatcttatagccactgaa 318
                |||||||||| | ||||||| |||| || || ||||| |||||||||||| |||||||
Sbjct: 11628504 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaa 11628561



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                   
Query: 260      ggatagacctcaatgacagctngagctcccagcttcttgacaatcttatag 310
                ||||||||||||| ||||||| |||||| ||  || || ||||||||||||
Sbjct: 11408787 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatag 11408837

>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05
              map C53961S, complete sequence
          Length = 175121

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 54/61 (88%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                          
Query: 261    gatagacctcaatgacagctngagctcccagcttcttgacaatcttatagccactgaagc 320
              ||||||||||||  | |||| |||||||||| ||||| |||||||||||| |||||||||
Sbjct: 138362 gatagacctcaaatatagctcgagctcccag-ttcttcacaatcttatagtcactgaagc 138420

               
Query: 321    c 321
              |
Sbjct: 138421 c 138421



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                 
Query: 260    ggatagacctcaatgacagctngagctcccagcttcttgacaatcttatag 310
              ||||||||||||| ||||||| |||||| ||  || || ||||||||||||
Sbjct: 115956 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatag 116006

>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0005P21, complete sequence
          Length = 147381

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 261   gatagacctcaatgacagctngagctcccagcttcttgacaatcttatagccactgaa 318
             |||||||||| | ||||||| |||| || || ||||| |||||||||||| |||||||
Sbjct: 64473 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaa 64416

>gb|AY107519.1| Zea mays PCO078033 mRNA sequence
          Length = 1299

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                               
Query: 509 aggatcttgatgcaatcctngtcgctncagaagtgcagaacaagcttgagca 560
           |||||||||| ||| || | |||||| ||||||||||| || ||||||||||
Sbjct: 853 aggatcttgacgcagtcgtcgtcgctccagaagtgcaggacgagcttgagca 802

>ref|XM_477999.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1083

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 434 gatccaagcacaatgtctatgacgatgactttccctcctgcttc 477
           ||||||| |||||  |||||||| ||||| ||||||||||||||
Sbjct: 902 gatccaaccacaacatctatgacaatgaccttccctcctgcttc 859

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 434      gatccaagcacaatgtctatgacgatgactttccctcctgcttc 477
                ||||||| |||||  |||||||| ||||| ||||||||||||||
Sbjct: 16261734 gatccaaccacaacatctatgacaatgaccttccctcctgcttc 16261777

>dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1634_H04
          Length = 151699

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 434   gatccaagcacaatgtctatgacgatgactttccctcctgcttc 477
             ||||||| |||||  |||||||| ||||| ||||||||||||||
Sbjct: 82172 gatccaaccacaacatctatgacaatgaccttccctcctgcttc 82215

>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full
            insert sequence
          Length = 1262

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 260  ggatagacctcaatgacagctngagctcccagcttcttgacaatcttatag 310
            ||||||||||||| ||||||| |||||| ||  || || ||||||||||||
Sbjct: 1167 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatag 1117

>gb|AC101777.8| Mus musculus chromosome 1, clone RP24-123J3, complete sequence
          Length = 177788

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 192    agagtgagcacacacaacaat 212
              |||||||||||||||||||||
Sbjct: 156171 agagtgagcacacacaacaat 156151

>ref|XM_746399.1| Aspergillus fumigatus Af293 actin-related protein ArpA (Afu4g13390)
           partial mRNA
          Length = 1146

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 342 tccagtccttctcttcccgct 362
           |||||||||||||||||||||
Sbjct: 700 tccagtccttctcttcccgct 680

>gb|AC131072.13| Mus musculus chromosome 1, clone RP23-396F21, complete sequence
          Length = 192542

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 192    agagtgagcacacacaacaat 212
              |||||||||||||||||||||
Sbjct: 174551 agagtgagcacacacaacaat 174571

>ref|XM_791236.1| PREDICTED: Strongylocentrotus purpuratus similar to HBS1-like protein
            (LOC591684), partial mRNA
          Length = 3640

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 284  gctcccagcttcttgacaat 303
            ||||||||||||||||||||
Sbjct: 3428 gctcccagcttcttgacaat 3409

>emb|AL353701.15| Human DNA sequence from clone RP11-203M2 on chromosome 9 Contains the
             TTF1 gene for transcription termination factor, RNA
             polymerase 1, a novel gene and three CpG islands, complete
             sequence
          Length = 107967

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 481   tggaggaacggccttcctgc 500
             ||||||||||||||||||||
Sbjct: 96735 tggaggaacggccttcctgc 96716

>gb|AC011291.8| Homo sapiens BAC clone RP11-67G7 from 2, complete sequence
          Length = 150214

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 35    tagaatatgaaaagcagtctaact 58
             |||||||||| |||||||||||||
Sbjct: 57275 tagaatatgataagcagtctaact 57298

>gb|AC012495.9| Homo sapiens BAC clone RP11-327F6 from 2, complete sequence
          Length = 215359

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 468   ctcctgcttcacgtggagga 487
             ||||||||||||||||||||
Sbjct: 66490 ctcctgcttcacgtggagga 66509

>emb|BX005328.9| Zebrafish DNA sequence from clone DKEY-63D15 in linkage group 8, complete
              sequence
          Length = 272840

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 208    acaatccacaacatatatgc 227
              ||||||||||||||||||||
Sbjct: 195158 acaatccacaacatatatgc 195139

>gb|AC114489.2| Homo sapiens chromosome 1 clone RP11-114B7, complete sequence
          Length = 172876

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     cagggtgtcataagatgaca 109
              ||||||||||||||||||||
Sbjct: 122060 cagggtgtcataagatgaca 122041

>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full
           insert sequence
          Length = 1362

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 98/125 (78%)
 Strand = Plus / Minus

                                                                       
Query: 449 tctatgacgatgactttccctcctgcttcacgtggaggaacggccttcctgcattgtgcg 508
           ||||||| |||||| ||||||||  | || ||||  |||| |||||| ||||| || |  
Sbjct: 961 tctatgatgatgaccttccctccctcctctcgtgatggaatggcctttctgcactgagtc 902

                                                                       
Query: 509 aggatcttgatgcaatcctngtcgctncagaagtgcagaacaagcttgagcaacacggnt 568
           | |||||| | |||||| |  ||||| |||  |||||  ||||||||||||| ||||| |
Sbjct: 901 aagatcttcacgcaatcatcatcgctccagtggtgcaatacaagcttgagcatcacggct 842

                
Query: 569 tgagc 573
           |||||
Sbjct: 841 tgagc 837

>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full
           insert sequence
          Length = 1264

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 98/125 (78%)
 Strand = Plus / Minus

                                                                       
Query: 449 tctatgacgatgactttccctcctgcttcacgtggaggaacggccttcctgcattgtgcg 508
           ||||||| |||||| ||||||||  | || ||||  |||| |||||| ||||| || |  
Sbjct: 966 tctatgatgatgaccttccctccctcctctcgtgatggaatggcctttctgcactgagtc 907

                                                                       
Query: 509 aggatcttgatgcaatcctngtcgctncagaagtgcagaacaagcttgagcaacacggnt 568
           | |||||| | |||||| |  ||||| |||  |||||  ||||||||||||| ||||| |
Sbjct: 906 aagatcttcacgcaatcatcatcgctccagtggtgcaatacaagcttgagcatcacggct 847

                
Query: 569 tgagc 573
           |||||
Sbjct: 846 tgagc 842

>dbj|AP001458.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-831H9, complete
             sequence
          Length = 177433

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   agccactgaagccagccttg 328
             ||||||||||||||||||||
Sbjct: 58859 agccactgaagccagccttg 58840


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,886,172
Number of Sequences: 3902068
Number of extensions: 3886172
Number of successful extensions: 84152
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 83978
Number of HSP's gapped (non-prelim): 171
length of query: 577
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 554
effective length of database: 17,143,297,704
effective search space: 9497386928016
effective search space used: 9497386928016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)