>PSBW_ODOSI (P49508) Photosystem II reaction center W protein|
          Length = 115

 Score =  145 bits (365), Expect = 1e-34
 Identities = 65/109 (59%), Positives = 89/109 (81%), Gaps = 1/109 (0%)
 Frame = -1

Query: 570 IQFIQGTDEQTIPDVRLTKSRDGSNGVAIFTFEQPSVFD-SSAELGDITGFYMVDEEGTL 394
           IQFI+G DE+ +PDVRLT+SRDGS G A F F+ P++ D S+A+ G+ITG Y++D+EGTL
Sbjct: 5   IQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQEGTL 64

Query: 393 SSVDVSAKFVNGKPAAVEAKYVMRTPRDWDRFMRFMERYSQANGLQFLK 247
            + DV+A+F+NGKP A+E+ Y+M++P  WDRFMRFMERY ++NGL F K
Sbjct: 65  ETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113

>PSBW_PORPU (P51347) Photosystem II reaction center W protein|
          Length = 115

 Score =  142 bits (359), Expect = 7e-34
 Identities = 66/110 (60%), Positives = 87/110 (79%), Gaps = 1/110 (0%)
 Frame = -1

Query: 573 SIQFIQGTDEQTIPDVRLTKSRDGSNGVAIFTFEQPSVFDSS-AELGDITGFYMVDEEGT 397
           +IQFIQG +E+ +PDVRLT+SRDGS G A F F  P + D+S A+ G+ITG Y++D EG 
Sbjct: 3   TIQFIQGINEEVVPDVRLTRSRDGSTGTATFRFTNPKILDASMADKGEITGMYLMDTEGQ 62

Query: 396 LSSVDVSAKFVNGKPAAVEAKYVMRTPRDWDRFMRFMERYSQANGLQFLK 247
           + + DV+AKF+NGKP A+EA +V+++P DWDRFMRFMERY+Q NGL F K
Sbjct: 63  IITRDVNAKFINGKPQAIEAVHVIKSPDDWDRFMRFMERYAQDNGLTFTK 112

>PSBW_GUITH (O78418) Photosystem II reaction center W protein|
          Length = 116

 Score =  140 bits (354), Expect = 3e-33
 Identities = 66/109 (60%), Positives = 83/109 (76%), Gaps = 1/109 (0%)
 Frame = -1

Query: 570 IQFIQGTDEQTIPDVRLTKSRDGSNGVAIFTFEQPSVFDSSAEL-GDITGFYMVDEEGTL 394
           IQFIQG +E  IPDVRLT+SRDGS G A F F  P V ++ + + G+ITG Y++DEEG L
Sbjct: 4   IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQL 63

Query: 393 SSVDVSAKFVNGKPAAVEAKYVMRTPRDWDRFMRFMERYSQANGLQFLK 247
            + DV+A+FVNGKP  +EA Y+M++  DWDRFMRFMERYS+ NGL F K
Sbjct: 64  VTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMERYSEDNGLSFTK 112

>PSBW_CYAPA (P48264) Photosystem II reaction center W protein|
          Length = 112

 Score =  134 bits (337), Expect = 2e-31
 Identities = 61/108 (56%), Positives = 84/108 (77%)
 Frame = -1

Query: 570 IQFIQGTDEQTIPDVRLTKSRDGSNGVAIFTFEQPSVFDSSAELGDITGFYMVDEEGTLS 391
           IQFIQG DE+ IPDV+L++S+DG+NG+A F F++P+VFD     G+ITG Y++DEEG LS
Sbjct: 4   IQFIQGVDEEAIPDVKLSRSQDGANGIAKFYFDKPTVFD--VYQGEITGLYLIDEEGELS 61

Query: 390 SVDVSAKFVNGKPAAVEAKYVMRTPRDWDRFMRFMERYSQANGLQFLK 247
           +  V AKF+NGKP ++EA Y+M    +W+RF+RFMERY++ N L F K
Sbjct: 62  TRTVYAKFINGKPQSIEASYIMNNREEWERFIRFMERYAKQNDLSFTK 109

>PSBW_CYACA (Q9TLZ2) Photosystem II reaction center W protein|
          Length = 115

 Score =  126 bits (317), Expect = 5e-29
 Identities = 60/111 (54%), Positives = 81/111 (72%), Gaps = 3/111 (2%)
 Frame = -1

Query: 570 IQFIQGTDEQTIPDVRLTKSRDGSNGVAIFTFEQPSVF---DSSAELGDITGFYMVDEEG 400
           IQFI+G DEQT+P++RLT+SRDG+ G AIF+F  P+VF    SS   G+ITG Y+ D+EG
Sbjct: 4   IQFIKGIDEQTVPEIRLTRSRDGNTGTAIFSFINPTVFLLHSSSQNYGEITGMYLQDDEG 63

Query: 399 TLSSVDVSAKFVNGKPAAVEAKYVMRTPRDWDRFMRFMERYSQANGLQFLK 247
            LS+ +V+A FVNGKP AVEA Y++R    WDR MRF+ +Y++   + F K
Sbjct: 64  ELSTRNVTANFVNGKPKAVEAVYLIRNKSGWDRLMRFINKYAEDKNMSFYK 114

>PSBW_SYNY3 (Q55356) Photosystem II reaction center W protein (Photosystem II|
           13 kDa protein)
          Length = 112

 Score =  111 bits (277), Expect = 2e-24
 Identities = 50/108 (46%), Positives = 75/108 (69%)
 Frame = -1

Query: 570 IQFIQGTDEQTIPDVRLTKSRDGSNGVAIFTFEQPSVFDSSAELGDITGFYMVDEEGTLS 391
           IQF +G  E  +P+VRL+KS++G +G+A F F +P++  +     DITG Y++D+EG + 
Sbjct: 4   IQFSKGVAETVVPEVRLSKSKNGQSGMAKFYFLEPTIL-AKESTDDITGMYLIDDEGEII 62

Query: 390 SVDVSAKFVNGKPAAVEAKYVMRTPRDWDRFMRFMERYSQANGLQFLK 247
           + +V  KF+NG+P A+EA  ++ +  +WDRFMRFMERY   NGL F K
Sbjct: 63  TREVKGKFINGRPTAIEATVILNSQPEWDRFMRFMERYGAENGLGFSK 110

>MGA_HUMAN (O43451) Maltase-glucoamylase, intestinal [Includes: Maltase (EC|
           3.2.1.20) (Alpha-glucosidase); Glucoamylase (EC 3.2.1.3)
           (Glucan 1,4-alpha-glucosidase)]
          Length = 1856

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 510 GTWSAARPGSSARPCPG*TGSTDA-TTSPPPPLT 608
           GT     PG++  P PG TG+T A TT PP P T
Sbjct: 46  GTTGTPDPGTTGTPDPGTTGTTHARTTGPPDPGT 79

>YK82_YEAST (P36170) Hypothetical protein YKR102W precursor|
          Length = 1169

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
 Frame = +2

Query: 305 SQSLGVRITYLASTAAGLPLTNLALTSTELSVPSSSTM*NPVMSPSSADESNTDG----- 469
           + S G   ++ AST+    +T+L  T T +S   SST+     +P+S+ ESN        
Sbjct: 607 TSSTGTATSFTASTSN--TMTSLVQTDTTVSFSLSSTVSEHTNAPTSSVESNASTFISSN 664

Query: 470 --------CSKVKMATPLLPSRDLVSRTS 532
                    S +   TP+ PS   V+ +S
Sbjct: 665 KGSVKSYVTSSIHSITPMYPSNQTVTSSS 693

>BCB1_ARATH (Q07488) Blue copper protein precursor (Blue copper-binding|
           protein) (AtBCB) (Stellacyanin) (Phytocyanin 1)
          Length = 196

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +3

Query: 510 GTWSAARPGSSARPCPG*TGSTDATTSPPPPLTMMIAGNWSPLGSA 647
           G    A PG+ A P PG T ST  TT P         G  +P GS+
Sbjct: 127 GATGGATPGAGATPAPGSTPSTGGTTPP------TAGGTTTPSGSS 166

>Y1986_HALSA (Q9HNR1) UPF0286 protein Vng1986c|
          Length = 250

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -1

Query: 411 DEEGTLSSVDVSAKFVNGKPAAVEAKYVMRTPRDWDRFMRFMERYSQAN 265
           + E     +D  A   +G P  +E K +  T   +D+  R+++RY++ N
Sbjct: 154 ERETKYGFIDFYAVDGDGTPVVIEVKRIQATLNHFDQLKRYVDRYAETN 202

>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c|
           precursor
          Length = 943

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 21/71 (29%), Positives = 36/71 (50%)
 Frame = +2

Query: 338 ASTAAGLPLTNLALTSTELSVPSSSTM*NPVMSPSSADESNTDGCSKVKMATPLLPSRDL 517
           ++T+A    ++L+ T+   S  SSS   + + S +SA  +++   S V  +TPL  S   
Sbjct: 202 STTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNST 261

Query: 518 VSRTSGIVCSS 550
            + TS    SS
Sbjct: 262 TAATSASATSS 272

>PKNF_MYCTU (P72003) Probable serine/threonine-protein kinase pknF (EC|
           2.7.11.1)
          Length = 476

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +3

Query: 510 GTWSAARPGSSARPCPG*---TGSTDATTSPPPPLTMMIAGNWSPLGS 644
           GT ++  P S+ RP P     TG+ D  T+ P    + I     PLGS
Sbjct: 350 GTTTSVAPASTTRPAPTTPTTTGAADTATASPTAAVVAIGALCFPLGS 397

>PKNF_MYCBO (Q7TZN1) Probable serine/threonine-protein kinase pknF (EC|
           2.7.11.1)
          Length = 476

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +3

Query: 510 GTWSAARPGSSARPCPG*---TGSTDATTSPPPPLTMMIAGNWSPLGS 644
           GT ++  P S+ RP P     TG+ D  T+ P    + I     PLGS
Sbjct: 350 GTTTSVAPASTTRPAPTTPTTTGAADTATASPTAAVVAIGALCFPLGS 397

>ERG6_MAGGR (Q5EN22) Sterol 24-C-methyltransferase (EC 2.1.1.41)|
           (Delta(24)-sterol C-methyltransferase)
          Length = 390

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = -1

Query: 525 RLTKSRDGSNGVAIFTFEQPSVFDSSAELGDITGFYMVDEEGTLSSVDVSAKFVNGKPAA 346
           ++T+ RD     A  TFEQ     SSA +G ++     D E + ++VD   +  +GK A 
Sbjct: 12  QITRRRD----TADMTFEQVLHKGSSANMGGLSSMLGKDREASKTAVDQYFRHWDGKTAK 67

Query: 345 VEAKYV 328
            E   V
Sbjct: 68  TETTKV 73

>HES1_RAT (Q04666) Transcription factor HES-1 (Hairy and enhancer of split 1)|
           (Hairy-like) (RHL)
          Length = 281

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +3

Query: 525 ARPGSSARPCP---G*TGSTDATTSPPPPLTMMIAGNWSPLGSAVC 653
           A P   A P P   G  G   A  +PPPPL  +  G   P GSA C
Sbjct: 159 AHPALQAPPPPPPSGPGGPQHAPFAPPPPLVPIPGGAAPPPGSAPC 204

>PO2F1_MOUSE (P25425) POU domain, class 2, transcription factor 1|
           (Octamer-binding transcription factor 1) (Oct-1) (OTF-1)
           (NF-A1)
          Length = 770

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
 Frame = +2

Query: 308 QSLGVRITYLASTAAGLPLTNLALTSTELSVPSSSTM*NPVMSP-----------SSADE 454
           +SL  R+T  A T       N A T    + P+SS + +P +SP           SSA E
Sbjct: 512 RSLPDRVTTTAGTTDSTSNNNTA-TVISTAPPASSAVTSPSLSPSPSASASTSEASSASE 570

Query: 455 SNTDGCSKVKMATPLLPSRDLVS 523
           +NT   +   + +PL  S+ +V+
Sbjct: 571 TNTTQTTSTPLPSPLGASQVMVT 593

>RDRP_NMV (P15095) RNA replication protein (186 kDa protein) (ORF 1 protein)|
           [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
           Helicase (EC 3.6.1.-)]
          Length = 1643

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 19/123 (15%)
 Frame = +2

Query: 263 PLAWE*RSMKRMNRSQSLGVRITYLA--STAAGLPLTNLALTSTELSVPSSSTM*NPVMS 436
           P  W  R   ++  + +L +  T+L   +T  G  L N  +    L   +S     P   
Sbjct: 640 PPEWLARHKYQIKTASNLHLCATFLVLDTTLLGETLANNCIEPEPLRPTASRKSCQPT-- 697

Query: 437 PSSADESNTDGCSKVKMATPLLPSRDLVSR-----------------TSGIVCSSVPWMN 565
             S D+S  D   + ++ TP++ +  L  R                 TS  V  S+PW +
Sbjct: 698 -PSVDKSGADSPPEKQIVTPIVDAAVLSCRPKLQDVTKPTKVLMAAETSDSVADSLPWAS 756

Query: 566 WID 574
           W++
Sbjct: 757 WVN 759

>HES1_HUMAN (Q14469) Transcription factor HES-1 (Hairy and enhancer of split 1)|
           (Hairy-like) (HHL) (Hairy homolog)
          Length = 280

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 549 PCPG*TGSTDATTSPPPPLTMMIAGNWSPLGSAVC 653
           P PG  G   A  +PPPPL  +  G   P G A C
Sbjct: 169 PPPGPGGPQHAPFAPPPPLVPIPGGAAPPPGGAPC 203

>HES1_BOVIN (Q3ZBG4) Transcription factor HES-1 (Hairy and enhancer of split 1)|
          Length = 280

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 549 PCPG*TGSTDATTSPPPPLTMMIAGNWSPLGSAVC 653
           P PG  G   A  +PPPPL  +  G   P G A C
Sbjct: 169 PPPGPGGPQHAPFAPPPPLVPIPGGAAPPPGGAPC 203


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,630,836
Number of Sequences: 219361
Number of extensions: 1257596
Number of successful extensions: 4975
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4961
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)