ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18m23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190081.1| Oryza sativa (japonica cultivar-group), predic... 408 e-111
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 408 e-111
3dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic D... 408 e-111
4gb|AY109937.1| Zea mays CL24596_1 mRNA sequence 373 e-100
5gb|AF366557.1| Oryza sativa saline responsive OSSRII protein mRN... 311 2e-81
6emb|AL450331.13| Mouse DNA sequence from clone RP23-41L21 on chr... 46 0.15
7gb|AC161235.6| Mus musculus chromosome 3, clone RP24-86C19, comp... 44 0.59
8ref|NM_201208.1| Danio rerio zgc:64102 (zgc:64102), mRNA 44 0.59
9emb|AL356583.28| Human DNA sequence from clone RP11-690C23 on ch... 44 0.59
10gb|BC053253.1| Danio rerio zgc:64102, mRNA (cDNA clone MGC:64102... 44 0.59
11emb|BX908782.7| Zebrafish DNA sequence from clone DKEY-6E4 in li... 44 0.59
12emb|X90770.1|LEMSREPRG L.esculentum microsatellite repeat DNA re... 44 0.59
13emb|BX682531.11| Zebrafish DNA sequence from clone CH211-12C17 i... 44 0.59
14gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 44 0.59
15gb|AC104908.10| Mus musculus chromosome 3, clone RP23-325M18, co... 44 0.59
16gb|AC119415.13| Medicago truncatula clone mth2-27n2, complete se... 42 2.3
17emb|AL135787.13| Human DNA sequence from clone RP11-16L21 on chr... 42 2.3
18gb|AC008798.10| Homo sapiens chromosome 19 clone CTD-2057D4, com... 42 2.3
19gb|AC126789.20| Medicago truncatula clone mth2-36n23, complete s... 42 2.3
20dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 42 2.3
21emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 2.3
22gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 2.3
23gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 42 2.3
24emb|BX005022.7| Zebrafish DNA sequence from clone DKEY-6N21 in l... 42 2.3
25dbj|AP005638.2| Homo sapiens genomic DNA, chromosome 11 clone:CM... 42 2.3
26dbj|D82937.1|SYCSDS2 Synechocystis sp. DNA for 13 kDa protein of... 42 2.3
27dbj|AP004606.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.3
28ref|XM_462952.1| Oryza sativa (japonica cultivar-group), predic... 40 9.1
29gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJN... 40 9.1
30gb|BC077590.1| Xenopus laevis MGC83946 protein, mRNA (cDNA clone... 40 9.1
31gb|AC129040.5| Rattus norvegicus 6 BAC CH230-372A13 (Children's ... 40 9.1
32gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.1
33ref|XM_802900.1| Trypanosoma cruzi strain CL Brener UDP-Gal or U... 40 9.1
34emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 9.1
35emb|CR387921.7| Zebrafish DNA sequence from clone CH211-84M6 in ... 40 9.1
36emb|AL353769.19| Human DNA sequence from clone RP11-188L14 on ch... 40 9.1
37emb|AL031123.14|HS80N2 Human DNA sequence from clone RP1-80N2 on... 40 9.1
38emb|CR384103.7| Zebrafish DNA sequence from clone DKEY-215K6 in ... 40 9.1
39emb|BX511086.5| Zebrafish DNA sequence from clone DKEY-38P8 in l... 40 9.1
40emb|AL590522.7| Mouse DNA sequence from clone RP23-117C5 on chro... 40 9.1
41emb|AL627163.3| Zebrafish DNA sequence from clone XX-KT90 Contai... 40 9.1
42gb|AE011925.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 9.1
43dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
44dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
45emb|AL935329.11| Zebrafish DNA sequence from clone CH211-253P2 i... 40 9.1
46gb|AC006170.11|AC006170 Drosophila melanogaster, chromosome 3R, ... 40 9.1
47gb|AC007854.4|AC007854 Drosophila melanogaster, chromosome 3R, r... 40 9.1
48dbj|AP004182.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
49dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
50dbj|AB104882.1| Serratia marcescens sdeX, sdeY genes for multidr... 40 9.1
51emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 9.1
52emb|CR790366.19| Zebrafish DNA sequence from clone DKEY-245M3 in... 40 9.1
53emb|AL627162.4| Zebrafish DNA sequence from clone XX-KT119 in li... 40 9.1
54gb|AE003767.2| Drosophila melanogaster chromosome 3R, section 10... 40 9.1
55dbj|AP000793.5| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 9.1
56emb|AL929379.14| Zebrafish DNA sequence from clone CH211-156H6, ... 40 9.1
57emb|AL929252.6| Zebrafish DNA sequence from clone CH211-150G13 i... 40 9.1
58dbj|AP004627.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 9.1 
>ref|NM_190081.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 363

 Score =  408 bits (206), Expect = e-111
 Identities = 299/330 (90%)
 Strand = Plus / Minus

                                                                       
Query: 243 acttcttgaggaactggaggccgttggcctgggagtagcgctccatgaagcgcatgaatc 302
           ||||||||| ||||||||||||||||||||||||||| | ||||||||| |||||||| |
Sbjct: 361 acttcttgacgaactggaggccgttggcctgggagtacctctccatgaatcgcatgaacc 302

                                                                       
Query: 303 ggtcccagtccctgggggtgcgcatcacgtacttggcctccacggccgccggcttgccgt 362
            |||||| ||||  || |||||||| |||||||||||||| | |  ||||||||||||||
Sbjct: 301 tgtcccactcccgcggcgtgcgcatgacgtacttggcctcgatgagcgccggcttgccgt 242

                                                                       
Query: 363 tgacgaacttggcgctgacgtccacggagctcagcgtgccctcctcgtcgaccatgtaga 422
           ||||||||||||||||||||||||| ||    |||  |||||| ||||||| ||||||||
Sbjct: 241 tgacgaacttggcgctgacgtccaccgactggagcacgccctcgtcgtcgatcatgtaga 182

                                                                       
Query: 423 atccggtgatgtcgcccagctccgccgacgagtcgaacaccgacggctgctcgaaggtga 482
           | |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 181 agccggtgatgtcgccgagctctgccgacgagtcgaacaccgacggctggtcgaaggtga 122

                                                                       
Query: 483 agatggccaccccgttgctgccgtcccgggacttggtcagccgcacgtccgggatcgtct 542
           |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agatggccacgccgttggtgccgtcccgggacttggtcagccgcacgtccgggatcgtct 62

                                         
Query: 543 gctcgtccgtgccctggatgaactggatcg 572
           ||||||| ||||||||||||||||||||||
Sbjct: 61  gctcgtcggtgccctggatgaactggatcg 32
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  408 bits (206), Expect = e-111
 Identities = 299/330 (90%)
 Strand = Plus / Minus

                                                                            
Query: 243      acttcttgaggaactggaggccgttggcctgggagtagcgctccatgaagcgcatgaatc 302
                ||||||||| ||||||||||||||||||||||||||| | ||||||||| |||||||| |
Sbjct: 41180919 acttcttgacgaactggaggccgttggcctgggagtacctctccatgaatcgcatgaacc 41180860

                                                                            
Query: 303      ggtcccagtccctgggggtgcgcatcacgtacttggcctccacggccgccggcttgccgt 362
                 |||||| ||||  || |||||||| |||||||||||||| | |  ||||||||||||||
Sbjct: 41180859 tgtcccactcccgcggcgtgcgcatgacgtacttggcctcgatgagcgccggcttgccgt 41180800

                                                                            
Query: 363      tgacgaacttggcgctgacgtccacggagctcagcgtgccctcctcgtcgaccatgtaga 422
                ||||||||||||||||||||||||| ||    |||  |||||| ||||||| ||||||||
Sbjct: 41180799 tgacgaacttggcgctgacgtccaccgactggagcacgccctcgtcgtcgatcatgtaga 41180740

                                                                            
Query: 423      atccggtgatgtcgcccagctccgccgacgagtcgaacaccgacggctgctcgaaggtga 482
                | |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 41180739 agccggtgatgtcgccgagctctgccgacgagtcgaacaccgacggctggtcgaaggtga 41180680

                                                                            
Query: 483      agatggccaccccgttgctgccgtcccgggacttggtcagccgcacgtccgggatcgtct 542
                |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41180679 agatggccacgccgttggtgccgtcccgggacttggtcagccgcacgtccgggatcgtct 41180620

                                              
Query: 543      gctcgtccgtgccctggatgaactggatcg 572
                ||||||| ||||||||||||||||||||||
Sbjct: 41180619 gctcgtcggtgccctggatgaactggatcg 41180590
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>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0504E02
          Length = 137468

 Score =  408 bits (206), Expect = e-111
 Identities = 299/330 (90%)
 Strand = Plus / Minus

                                                                         
Query: 243   acttcttgaggaactggaggccgttggcctgggagtagcgctccatgaagcgcatgaatc 302
             ||||||||| ||||||||||||||||||||||||||| | ||||||||| |||||||| |
Sbjct: 77974 acttcttgacgaactggaggccgttggcctgggagtacctctccatgaatcgcatgaacc 77915

                                                                         
Query: 303   ggtcccagtccctgggggtgcgcatcacgtacttggcctccacggccgccggcttgccgt 362
              |||||| ||||  || |||||||| |||||||||||||| | |  ||||||||||||||
Sbjct: 77914 tgtcccactcccgcggcgtgcgcatgacgtacttggcctcgatgagcgccggcttgccgt 77855

                                                                         
Query: 363   tgacgaacttggcgctgacgtccacggagctcagcgtgccctcctcgtcgaccatgtaga 422
             ||||||||||||||||||||||||| ||    |||  |||||| ||||||| ||||||||
Sbjct: 77854 tgacgaacttggcgctgacgtccaccgactggagcacgccctcgtcgtcgatcatgtaga 77795

                                                                         
Query: 423   atccggtgatgtcgcccagctccgccgacgagtcgaacaccgacggctgctcgaaggtga 482
             | |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 77794 agccggtgatgtcgccgagctctgccgacgagtcgaacaccgacggctggtcgaaggtga 77735

                                                                         
Query: 483   agatggccaccccgttgctgccgtcccgggacttggtcagccgcacgtccgggatcgtct 542
             |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77734 agatggccacgccgttggtgccgtcccgggacttggtcagccgcacgtccgggatcgtct 77675

                                           
Query: 543   gctcgtccgtgccctggatgaactggatcg 572
             ||||||| ||||||||||||||||||||||
Sbjct: 77674 gctcgtcggtgccctggatgaactggatcg 77645
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>gb|AY109937.1| Zea mays CL24596_1 mRNA sequence
          Length = 795

 Score =  373 bits (188), Expect = e-100
 Identities = 287/320 (89%)
 Strand = Plus / Plus

                                                                       
Query: 253 gaactggaggccgttggcctgggagtagcgctccatgaagcgcatgaatcggtcccagtc 312
           ||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| ||
Sbjct: 385 gaactggaggccgttggcccgggagtaccgctccatgaagcgcatgaagcggtcccactc 444

                                                                       
Query: 313 cctgggggtgcgcatcacgtacttggcctccacggccgccggcttgccgttgacgaactt 372
           || ||| ||||||||||||||||||||||| |    ||||||||||||||| ||||||||
Sbjct: 445 ccggggcgtgcgcatcacgtacttggcctcgatccgcgccggcttgccgttcacgaactt 504

                                                                       
Query: 373 ggcgctgacgtccacggagctcagcgtgccctcctcgtcgaccatgtagaatccggtgat 432
           |||||| |||||||||||   ||||  |||||| ||||| |||||||| || || | |||
Sbjct: 505 ggcgctcacgtccacggactgcagcacgccctcgtcgtccaccatgtaaaagcccgggat 564

                                                                       
Query: 433 gtcgcccagctccgccgacgagtcgaacaccgacggctgctcgaaggtgaagatggccac 492
           ||||||||||||||||||||||||||||||||||||  ||||||| | ||||| ||||||
Sbjct: 565 gtcgcccagctccgccgacgagtcgaacaccgacggacgctcgaacgcgaagacggccac 624

                                                                       
Query: 493 cccgttgctgccgtcccgggacttggtcagccgcacgtccgggatcgtctgctcgtccgt 552
            |||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 625 gccgttggtgccgtcgcgggacttggtcagccgcacgtccgggaccgtctgctcgtccgt 684

                               
Query: 553 gccctggatgaactggatcg 572
           ||||||||||||||||||||
Sbjct: 685 gccctggatgaactggatcg 704
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>gb|AF366557.1| Oryza sativa saline responsive OSSRII protein mRNA, partial cds
          Length = 294

 Score =  311 bits (157), Expect = 2e-81
 Identities = 259/293 (88%)
 Strand = Plus / Minus

                                                                       
Query: 244 cttcttgaggaactggaggccgttggcctgggagtagcgctccatgaagcgcatgaatcg 303
           |||||||| |||||||||| |||||||||||||||| | ||||||||| |||||||| | 
Sbjct: 294 cttcttgacgaactggaggacgttggcctgggagtacctctccatgaatcgcatgaacct 235

                                                                       
Query: 304 gtcccagtccctgggggtgcgcatcacgtacttggcctccacggccgccggcttgccgtt 363
           |||||| ||||  || |||||||| |||||||||||||| | |  |||||||||||||||
Sbjct: 234 gtcccactcccgcggcgtgcgcatgacgtacttggcctcgatgagcgccggcttgccgtt 175

                                                                       
Query: 364 gacgaacttggcgctgacgtccacggagctcagcgtgccctcctcgtcgaccatgtagaa 423
           |||||||||||||||||||||||| ||    |||  |||||| ||||||| |||||||||
Sbjct: 174 gacgaacttggcgctgacgtccaccgactggagcacgccctcgtcgtcgatcatgtagaa 115

                                                                       
Query: 424 tccggtgatgtcgcccagctccgccgacgagtcgaacaccgacggctgctcgaaggtgaa 483
            ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 114 gccggtgatgtcgcccagcttcgccgacgagtcgaacaccgacggctggtcgaaggtgaa 55

                                                                
Query: 484 gatggccaccccgttgctgccgtcccgggacttggtcagccgcacgtccggga 536
           ||||||||| || ||  ||||||||| |||||| |||||||||||||||||||
Sbjct: 54  gatggccacgccctttgtgccgtccccggactttgtcagccgcacgtccggga 2
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>emb|AL450331.13| Mouse DNA sequence from clone RP23-41L21 on chromosome 13 Contains a
             transcription elongation factor B (SIII) 1 (15kD, elongin
             C) (Tceb1) pseudogene, a serine (or cysteine) proteinase
             inhibitor (Serpin) pseudogene, the gene for serine (or
             cysteine) proteinase inhibitor (Serpin, Spi) family member
             NK21L1 (1600002F03Rik), the gene for a novel serine (or
             cysteine) proteinase inhibitor (Serpin, Spi) family member
             and a CpG island, complete sequence
          Length = 140944

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 51    tgaacagggtacgcagccacagagcac 77
             ||||||||||| |||||||||||||||
Sbjct: 50596 tgaacagggtaagcagccacagagcac 50570
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>gb|AC161235.6| Mus musculus chromosome 3, clone RP24-86C19, complete sequence
          Length = 206729

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 150    aaaaacatgtagaagaagaataagaa 175
              |||||||||||||||||||| |||||
Sbjct: 157559 aaaaacatgtagaagaagaagaagaa 157584
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>ref|NM_201208.1| Danio rerio zgc:64102 (zgc:64102), mRNA
          Length = 1570

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 471 gctcgaaggtgaagatggccac 492
           ||||||||||||||||||||||
Sbjct: 512 gctcgaaggtgaagatggccac 491
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>emb|AL356583.28| Human DNA sequence from clone RP11-690C23 on chromosome 1 Contains the 5'
              end of the SMYD3 gene for SET and MYND domain containing 3,
              an ubiquitin specific protease 6 (Tre-2 oncogene) (USP6)
              pseudogene, a novel gene, a pseudogene similar to part of
              tumor necrosis factor receptor superfamily member 13B
              (TNFRSF13B), a pseudogene similar to part of
              carboxypeptidase D (CPD), the TFB2M gene for mitochondrial
              transcription factor B2, the 5' end of the gene for a novel
              protein (FLJ32001, DKFZp451A152, DKFZp451B077, FLJ00215)
              and two CpG islands, complete sequence
          Length = 207486

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 133    aatccatccatgaaaccaaaaa 154
              ||||||||||||||||||||||
Sbjct: 171305 aatccatccatgaaaccaaaaa 171326
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>gb|BC053253.1| Danio rerio zgc:64102, mRNA (cDNA clone MGC:64102 IMAGE:6795089),
           complete cds
          Length = 1570

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 471 gctcgaaggtgaagatggccac 492
           ||||||||||||||||||||||
Sbjct: 512 gctcgaaggtgaagatggccac 491
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>emb|BX908782.7| Zebrafish DNA sequence from clone DKEY-6E4 in linkage group 2, complete
             sequence
          Length = 196309

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 216   attggatggacgaacggacgga 237
             ||||||||||||||||||||||
Sbjct: 85686 attggatggacgaacggacgga 85665
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>emb|X90770.1|LEMSREPRG L.esculentum microsatellite repeat DNA region
          Length = 4532

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 219  ggatggacgaacggacggatgg 240
            ||||||||||||||||||||||
Sbjct: 4054 ggatggacgaacggacggatgg 4033
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>emb|BX682531.11| Zebrafish DNA sequence from clone CH211-12C17 in linkage group 23,
             complete sequence
          Length = 171113

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 471   gctcgaaggtgaagatggccac 492
             ||||||||||||||||||||||
Sbjct: 50315 gctcgaaggtgaagatggccac 50294
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 347     gccgccggcttgccgttgacga 368
               ||||||||||||||||||||||
Sbjct: 3178827 gccgccggcttgccgttgacga 3178806
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>gb|AC104908.10| Mus musculus chromosome 3, clone RP23-325M18, complete sequence
          Length = 231792

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 150    aaaaacatgtagaagaagaataagaa 175
              |||||||||||||||||||| |||||
Sbjct: 182713 aaaaacatgtagaagaagaagaagaa 182688
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>gb|AC119415.13| Medicago truncatula clone mth2-27n2, complete sequence
          Length = 139330

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 105   aactcaatgcagctagttttc 125
             |||||||||||||||||||||
Sbjct: 69720 aactcaatgcagctagttttc 69740
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>emb|AL135787.13| Human DNA sequence from clone RP11-16L21 on chromosome 9 Contains the 3'
              end of a variant of the gene for  KIAA1962 protein similar
              to zinc finger protein HIT-10, the LTB4DH gene for
              leukotriene B4 12-hydroxydehydrogenase (MGC34943), the gene
              for KIAA0563-related gene (LOC286331), the GNG10 gene for
              guanine nucleotide binding protein (G protein), gamma 10, a
              novel gene, the 3' end of a novel gene and six CpG islands,
              complete sequence
          Length = 161448

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 301    tcggtcccagtccctgggggtgcgc 325
              |||||||| ||||||||||||||||
Sbjct: 104801 tcggtcccggtccctgggggtgcgc 104825
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>gb|AC008798.10| Homo sapiens chromosome 19 clone CTD-2057D4, complete sequence
          Length = 135331

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 220   gatggacgaacggacggatgg 240
             |||||||||||||||||||||
Sbjct: 61752 gatggacgaacggacggatgg 61772
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>gb|AC126789.20| Medicago truncatula clone mth2-36n23, complete sequence
          Length = 126875

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 105   aactcaatgcagctagttttc 125
             |||||||||||||||||||||
Sbjct: 23880 aactcaatgcagctagttttc 23900
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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 277   gtagcgctccatgaagcgcatgaatcggtccca 309
             |||||||||||| |||||||| || ||||||||
Sbjct: 49932 gtagcgctccataaagcgcataaaacggtccca 49964
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 352     cggcttgccgttgacgaacttggcg 376
               ||||| |||||||||||||||||||
Sbjct: 1744147 cggctggccgttgacgaacttggcg 1744171
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 341     tccacggccgccggcttgccgttga 365
               |||| ||||||||||||||||||||
Sbjct: 3086892 tccatggccgccggcttgccgttga 3086868
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 275     gagtagcgctccatgaagcgc 295
               |||||||||||||||||||||
Sbjct: 3054620 gagtagcgctccatgaagcgc 3054640
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>emb|BX005022.7| Zebrafish DNA sequence from clone DKEY-6N21 in linkage group 7, complete
              sequence
          Length = 217582

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 218    tggatggacgaacggacggat 238
              |||||||||||||||||||||
Sbjct: 192245 tggatggacgaacggacggat 192225
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>dbj|AP005638.2| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-61B13, complete
             sequence
          Length = 83280

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 155   catgtagaagaagaataagaa 175
             |||||||||||||||||||||
Sbjct: 47054 catgtagaagaagaataagaa 47074
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>dbj|D82937.1|SYCSDS2 Synechocystis sp. DNA for 13 kDa protein of photosystem II,
           complete cds
          Length = 754

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 277 gtagcgctccatgaagcgcatgaatcggtccca 309
           |||||||||||| |||||||| || ||||||||
Sbjct: 353 gtagcgctccataaagcgcataaaacggtccca 321
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>dbj|AP004606.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-138O22, complete
           sequences
          Length = 173185

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 155 catgtagaagaagaataagaa 175
           |||||||||||||||||||||
Sbjct: 85  catgtagaagaagaataagaa 105
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>ref|XM_462952.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3291

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 586  catcgccaccgccaccactg 605
            ||||||||||||||||||||
Sbjct: 2149 catcgccaccgccaccactg 2130
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>gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete
             sequence
          Length = 151269

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 586   catcgccaccgccaccactg 605
             ||||||||||||||||||||
Sbjct: 74529 catcgccaccgccaccactg 74548
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>gb|BC077590.1| Xenopus laevis MGC83946 protein, mRNA (cDNA clone MGC:83946
            IMAGE:6861971), complete cds
          Length = 2701

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 145  aaaccaaaaacatgtagaagaagaataa 172
            |||| ||||||||||||| |||||||||
Sbjct: 2644 aaactaaaaacatgtagatgaagaataa 2671
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>gb|AC129040.5| Rattus norvegicus 6 BAC CH230-372A13 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 176067

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    tggatggacgaacggacgga 237
              ||||||||||||||||||||
Sbjct: 144730 tggatggacgaacggacgga 144711
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 586      catcgccaccgccaccactg 605
                ||||||||||||||||||||
Sbjct: 20156445 catcgccaccgccaccactg 20156464
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>ref|XM_802900.1| Trypanosoma cruzi strain CL Brener UDP-Gal or UDP-GlcNAc-dependent
           glycosyltransferase (Tc00.1047053508193.60) partial mRNA
          Length = 1185

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 596 gccaccactgacgatgatga 615
           ||||||||||||||||||||
Sbjct: 154 gccaccactgacgatgatga 173
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 345     cggccgccggcttgccgttg 364
               ||||||||||||||||||||
Sbjct: 3416335 cggccgccggcttgccgttg 3416354
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>emb|CR387921.7| Zebrafish DNA sequence from clone CH211-84M6 in linkage group 17,
              complete sequence
          Length = 187568

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 218    tggatggacgaacggacgga 237
              ||||||||||||||||||||
Sbjct: 170458 tggatggacgaacggacgga 170477
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>emb|AL353769.19| Human DNA sequence from clone RP11-188L14 on chromosome 10 Contains a
             CpG island, complete sequence
          Length = 79509

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   gaaaccaaaaacatgtagaa 163
             ||||||||||||||||||||
Sbjct: 33605 gaaaccaaaaacatgtagaa 33586
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>emb|AL031123.14|HS80N2 Human DNA sequence from clone RP1-80N2 on chromosome 6p24.1-25.3 Contains
              the gene for MD-1,RP105-associated, part of a putative
              novel gene and three putative CpG islands, complete
              sequence
          Length = 193731

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    tctgtcaggaatccatccat 143
              ||||||||||||||||||||
Sbjct: 134530 tctgtcaggaatccatccat 134511
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>emb|CR384103.7| Zebrafish DNA sequence from clone DKEY-215K6 in linkage group 5,
             complete sequence
          Length = 142808

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 217   ttggatggacgaacggacggatgg 240
             ||||||||||| ||||||||||||
Sbjct: 87812 ttggatggacggacggacggatgg 87835
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>emb|BX511086.5| Zebrafish DNA sequence from clone DKEY-38P8 in linkage group 7, complete
              sequence
          Length = 228170

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    tggatggacgaacggacgga 237
              ||||||||||||||||||||
Sbjct: 104746 tggatggacgaacggacgga 104727
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>emb|AL590522.7| Mouse DNA sequence from clone RP23-117C5 on chromosome 13 Contains the
              Prlpc2, Prlpe and Prlpf genes for prolactin-like proteins
              C2 (1600019F10RIK, Prlpc beta), E (Prlpg) and F (Plp-f),
              and genes 1600032B14RIK, 1600017L04RIK (3830403L08RIK) and
              1600014J19RIK for novel proteins similar to prolactin,
              complete sequence
          Length = 211776

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    aaaaacatgtagaagaagaa 169
              ||||||||||||||||||||
Sbjct: 109407 aaaaacatgtagaagaagaa 109388
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>emb|AL627163.3| Zebrafish DNA sequence from clone XX-KT90 Contains part of a novel
           gene and a novel gene similar to SLC17A6 (solute carrier
           family 17 (sodium-dependent inorganic phosphate
           cotransporter), member 6), complete sequence
          Length = 93831

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 218 tggatggacgaacggacgga 237
           ||||||||||||||||||||
Sbjct: 649 tggatggacgaacggacgga 630
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>gb|AE011925.1| Xanthomonas axonopodis pv. citri str. 306,  section 303 of 469 of the
             complete genome
          Length = 12478

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   cggccgccggcttgccgttg 364
             ||||||||||||||||||||
Sbjct: 10293 cggccgccggcttgccgttg 10312
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 586      catcgccaccgccaccactgacga 609
                |||||||||| |||||||||||||
Sbjct: 23397268 catcgccaccaccaccactgacga 23397245
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 586      catcgccaccgccaccactg 605
                ||||||||||||||||||||
Sbjct: 20149472 catcgccaccgccaccactg 20149491
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>emb|AL935329.11| Zebrafish DNA sequence from clone CH211-253P2 in linkage group 12,
             complete sequence
          Length = 172778

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   tggatggacgaacggacgga 237
             ||||||||||||||||||||
Sbjct: 94449 tggatggacgaacggacgga 94468
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>gb|AC006170.11|AC006170 Drosophila melanogaster, chromosome 3R, region 98E2-98F2, BAC clone
             BACR48K07, complete sequence
          Length = 168471

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   tggatggacgaacggacgga 237
             ||||||||||||||||||||
Sbjct: 71900 tggatggacgaacggacgga 71919
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>gb|AC007854.4|AC007854 Drosophila melanogaster, chromosome 3R, region 98F-98F, BAC clone
            BACR13H19, complete sequence
          Length = 155666

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 218  tggatggacgaacggacgga 237
            ||||||||||||||||||||
Sbjct: 7731 tggatggacgaacggacgga 7750
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>dbj|AP004182.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1199_H01
          Length = 107252

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 586   catcgccaccgccaccactgacga 609
             |||||||||| |||||||||||||
Sbjct: 78492 catcgccaccaccaccactgacga 78469
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>dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0453G03
          Length = 144480

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 586   catcgccaccgccaccactgacga 609
             |||||||||| |||||||||||||
Sbjct: 17165 catcgccaccaccaccactgacga 17142
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>dbj|AB104882.1| Serratia marcescens sdeX, sdeY genes for multidrug efflux pump SdeX,
            multidrug efflux pump SdeY, complete cds
          Length = 4503

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 486  tggccaccccgttgctgccg 505
            ||||||||||||||||||||
Sbjct: 1585 tggccaccccgttgctgccg 1604
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 451     cgagtcgaacaccgacggct 470
               ||||||||||||||||||||
Sbjct: 5085202 cgagtcgaacaccgacggct 5085183
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>emb|CR790366.19| Zebrafish DNA sequence from clone DKEY-245M3 in linkage group 5,
             complete sequence
          Length = 151327

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   tggatggacgaacggacgga 237
             ||||||||||||||||||||
Sbjct: 87251 tggatggacgaacggacgga 87232
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>emb|AL627162.4| Zebrafish DNA sequence from clone XX-KT119 in linkage group 7 Contains
             part of a gene similar to GAS2 (growth arrest-specific 2)
             a CpG island, complete sequence
          Length = 29255

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   tggatggacgaacggacgga 237
             ||||||||||||||||||||
Sbjct: 27869 tggatggacgaacggacgga 27850
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>gb|AE003767.2| Drosophila melanogaster chromosome 3R, section 105 of 118 of the
             complete sequence
          Length = 231562

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   tggatggacgaacggacgga 237
             ||||||||||||||||||||
Sbjct: 55001 tggatggacgaacggacgga 55020
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>dbj|AP000793.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-812L3, complete
             sequences
          Length = 169152

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 132   gaatccatccatgaaaccaaaaac 155
             ||||||||||||| ||||||||||
Sbjct: 48283 gaatccatccatgtaaccaaaaac 48260
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>emb|AL929379.14| Zebrafish DNA sequence from clone CH211-156H6, complete sequence
          Length = 167232

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 218    tggatggacgaacggacgga 237
              ||||||||||||||||||||
Sbjct: 131709 tggatggacgaacggacgga 131728



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 218    tggatggacgaacggacgga 237
              ||||||||||||||||||||
Sbjct: 131481 tggatggacgaacggacgga 131500
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>emb|AL929252.6| Zebrafish DNA sequence from clone CH211-150G13 in linkage group 7,
             complete sequence
          Length = 173244

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   tggatggacgaacggacgga 237
             ||||||||||||||||||||
Sbjct: 32672 tggatggacgaacggacgga 32691
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>dbj|AP004627.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT01J10b, TM0090b,
            complete sequence
          Length = 39905

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 589  cgccaccgccaccactgacg 608
            ||||||||||||||||||||
Sbjct: 7446 cgccaccgccaccactgacg 7465


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,644,776
Number of Sequences: 3902068
Number of extensions: 4644776
Number of successful extensions: 99129
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98282
Number of HSP's gapped (non-prelim): 846
length of query: 669
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 646
effective length of database: 17,143,297,704
effective search space: 11074570316784
effective search space used: 11074570316784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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