ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19b21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CENG3_HUMAN (Q96P47) Centaurin-gamma 3 (ARF-GAP with GTP-binding... 31 2.0
2RHBT2_MOUSE (Q91V93) Rho-related BTB domain-containing protein 2... 30 4.4
3FZD8_XENLA (O93274) Frizzled 8 precursor (Frizzled-8) (Fz-8) (Xfz8) 29 9.7

>CENG3_HUMAN (Q96P47) Centaurin-gamma 3 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 3)
           (AGAP-3) (MR1-interacting protein) (MRIP-1)
           (CRAM-associated GTPase) (CRAG)
          Length = 875

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 22/67 (32%), Positives = 28/67 (41%)
 Frame = -2

Query: 501 ASPACRHYRSGDR*ASGTCWAGTTLRRRPSGQH*ATCQVTTIPSWSCLQTGARRTACHRC 322
           AS A  H    +R  S + WAG     RP G H  +C V++   WS   T       H  
Sbjct: 468 ASSASLH---SERPLSSSAWAGP----RPEGLHQRSCSVSSADQWSEATTSLPPGMQHPA 520

Query: 321 GHPSESL 301
             P+E L
Sbjct: 521 SGPAEVL 527



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>RHBT2_MOUSE (Q91V93) Rho-related BTB domain-containing protein 2 (Deleted in|
           breast cancer 2 gene protein homolog)
          Length = 728

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 464 GELRGPAGLGQP*EEGHQDSTEQH 393
           GEL GP+G G P  E H+   EQH
Sbjct: 303 GELGGPSGSGGPRPEDHRSHPEQH 326



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>FZD8_XENLA (O93274) Frizzled 8 precursor (Frizzled-8) (Fz-8) (Xfz8)|
          Length = 581

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
 Frame = +1

Query: 421 SSQGCPSPAGPRSSPIP*AVVPAGR------RSRTLARWCSSWCRCR 543
           + Q   +P+ P     P   VP GR      RSR+ A  C S C+CR
Sbjct: 148 TEQTTAAPSHPEPPKPPARSVPKGRTRVEPPRSRSRATGCESGCQCR 194


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,518,977
Number of Sequences: 219361
Number of extensions: 1672927
Number of successful extensions: 4748
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4745
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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