>COPE_ARATH (O64748) Probable coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 293

 Score =  225 bits (573), Expect = 9e-59
 Identities = 105/146 (71%), Positives = 128/146 (87%)
 Frame = -3

Query: 624 LKMHRSDYADKQLKIMQQTDEDHTLTQLANAWLDIAVGGSKIREAYLIFQDFAEKYPMTG 445
           +KMHR++YA+KQL++MQQ DEDHTLTQLA+AWL++AVGGSKI+EAYLIF+DF+EKYPMT 
Sbjct: 148 IKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFEDFSEKYPMTC 207

Query: 444 MVLNGKAVCCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIVCNLHLGKPSSRYFSQLKL 265
           ++LNGKAVCCM MG+F          LNKDAKDPETLANL+VC+LH+GK SSR+ SQLKL
Sbjct: 208 LILNGKAVCCMQMGNFDEAETLLLEALNKDAKDPETLANLVVCSLHVGKSSSRHLSQLKL 267

Query: 264 SHPDHVLVKTTTSAEDNFERALQAVA 187
           SHP+H+LVK  +SAEDNFERA+Q VA
Sbjct: 268 SHPEHILVKRVSSAEDNFERAVQLVA 293

>COPE_CRIGR (Q60445) Coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP) (LDLF)
          Length = 307

 Score =  128 bits (322), Expect = 1e-29
 Identities = 72/147 (48%), Positives = 96/147 (65%), Gaps = 4/147 (2%)
 Frame = -3

Query: 624 LKMHRSDYADKQLKIMQQTDEDHTLTQLANAWLDIAVGGSKIREAYLIFQDFAEKYPMTG 445
           LK+ R D A K+LK MQ  DED TLTQLA AW+++AVGG K++EAY IFQ+ A+K   T 
Sbjct: 156 LKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQEAYYIFQELADKCSPTL 215

Query: 444 MVLNGKAVCCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIVCNLHLGKP---SSRYFSQ 274
           ++LNG+A C    G +          L+KD+  PETL NLIV + HLGKP   ++RY SQ
Sbjct: 216 LLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPEVTNRYLSQ 275

Query: 273 LKLSHPDHVLVKTTTSAEDNFER-ALQ 196
           LK +H  H  +K   + E++F+R ALQ
Sbjct: 276 LKDAHRTHPFIKEYQAKENDFDRLALQ 302

>COPE_MOUSE (O89079) Coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 307

 Score =  127 bits (320), Expect = 2e-29
 Identities = 69/143 (48%), Positives = 93/143 (65%), Gaps = 3/143 (2%)
 Frame = -3

Query: 624 LKMHRSDYADKQLKIMQQTDEDHTLTQLANAWLDIAVGGSKIREAYLIFQDFAEKYPMTG 445
           LK+ R D A K+LK MQ  DED TLTQLA AW+++AVGG K++EAY IFQ+ A+K   T 
Sbjct: 156 LKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQEAYYIFQELADKCSPTL 215

Query: 444 MVLNGKAVCCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIVCNLHLGKP---SSRYFSQ 274
           ++LNG+A C    G +          L+KD+  PETL NLIV + HLGKP   ++RY SQ
Sbjct: 216 LLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPEVTNRYLSQ 275

Query: 273 LKLSHPDHVLVKTTTSAEDNFER 205
           LK +H  H  +K   + E++F+R
Sbjct: 276 LKDAHRAHPFIKEYQAKENDFDR 298

>COPE_HUMAN (O14579) Coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 307

 Score =  127 bits (319), Expect = 3e-29
 Identities = 68/143 (47%), Positives = 92/143 (64%), Gaps = 3/143 (2%)
 Frame = -3

Query: 624 LKMHRSDYADKQLKIMQQTDEDHTLTQLANAWLDIAVGGSKIREAYLIFQDFAEKYPMTG 445
           LK+ R D A K+LK MQ  DED TLTQLA AW+ +A GG K+++AY IFQ+ A+K   T 
Sbjct: 156 LKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTL 215

Query: 444 MVLNGKAVCCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIVCNLHLGKP---SSRYFSQ 274
           ++LNG+A C M  G +          L+KD+  PETL NLIV + HLGKP   ++RY SQ
Sbjct: 216 LLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQ 275

Query: 273 LKLSHPDHVLVKTTTSAEDNFER 205
           LK +H  H  +K   + E++F+R
Sbjct: 276 LKDAHRSHPFIKEYQAKENDFDR 298

>COPE_BOVIN (Q28104) Coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 307

 Score =  127 bits (319), Expect = 3e-29
 Identities = 67/143 (46%), Positives = 92/143 (64%), Gaps = 3/143 (2%)
 Frame = -3

Query: 624 LKMHRSDYADKQLKIMQQTDEDHTLTQLANAWLDIAVGGSKIREAYLIFQDFAEKYPMTG 445
           LK+ R D A K+LK MQ  DED TLTQLA AW+ +A GG K+++AY IFQ+ A+K   T 
Sbjct: 156 LKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL 215

Query: 444 MVLNGKAVCCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIVCNLHLGKP---SSRYFSQ 274
           ++LNG+A C M  G +          L+KD+  PETL NL+V + HLGKP   ++RY SQ
Sbjct: 216 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQ 275

Query: 273 LKLSHPDHVLVKTTTSAEDNFER 205
           LK +H  H  +K   + E++F+R
Sbjct: 276 LKDAHRSHPFIKEYRAKENDFDR 298

>COPE_CAEEL (O62246) Probable coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 292

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
 Frame = -3

Query: 624 LKMHRSDYADKQLKIMQQTDEDHTLTQLANAWLDIAVGGSKIREAYLIFQDFAEKYPMTG 445
           +KM++   A  ++K M Q DED TL+QLANA +       K+++A  I+ + ++KY  T 
Sbjct: 143 IKMNKRKLAIGEVKKMNQIDEDATLSQLANALVTSFGASGKVKDALYIYSEMSDKYGRTT 202

Query: 444 MVLNGKAVCCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIV---CNLHLGKPSSRYFSQ 274
            +   +AV  +    +          L +D KD + L N IV    N        R+ SQ
Sbjct: 203 DLEMHQAVVSILTQDYAAAEELLESALERDNKDADVLINSIVSAQLNEKDDDVVERFISQ 262

Query: 273 LKLSHPDHVLVKTTTSAEDNFER 205
           LK  HP+H  V      E  F+R
Sbjct: 263 LKHEHPNHPWVIDFNEKEAEFDR 285

>BCR_HUMAN (P11274) Breakpoint cluster region protein (EC 2.7.11.1) (NY-REN-26|
           antigen)
          Length = 1271

 Score = 36.6 bits (83), Expect = 0.062
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 10/101 (9%)
 Frame = -3

Query: 483 IFQDFAEKYPMTGMVLNGKAVCCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIVCNLHL 304
           +++ F + Y   G+ +     CC     F           NKDAKDP T  +L      L
Sbjct: 590 VYRAFVDNY---GVAMEMAEKCCQANAQFAEISENLRARSNKDAKDPTTKNSL---ETLL 643

Query: 303 GKPSSR----------YFSQLKLSHPDHVLVKTTTSAEDNF 211
            KP  R                 SHPDH L++       NF
Sbjct: 644 YKPVDRVTRSTLVLHDLLKHTPASHPDHPLLQDALRISQNF 684

>COPE_SCHPO (O74767) Probable coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 288

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = -3

Query: 624 LKMHRSDYADKQLKIMQQTDEDHTLTQLANAWLDIAVGG-SKIREAYLIFQDF--AEKYP 454
           L+ H+ + A++ LK      ++  + QLA +W+ I  GG     +A+ +F++    +  P
Sbjct: 137 LREHKIEAAEQTLKQALDWADEEIVLQLAQSWIKIVSGGVESYNDAFYVFEELNGTDSNP 196

Query: 453 MT 448
           MT
Sbjct: 197 MT 198

>SECY_PYRSA (P38397) Preprotein translocase secY subunit (Fragment)|
          Length = 412

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 101 TNTIHSVKALQNGTGEAQRANCNQARMFQATAWSALSKL 217
           T +I +++ LQ   GEA R   +Q   ++A  W+A+  L
Sbjct: 88  TTSIPNLEKLQKEEGEAGRQKISQITRYRALGWAAIQSL 126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,236,889
Number of Sequences: 219361
Number of extensions: 1757297
Number of successful extensions: 4048
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4042
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)