Clone Name | rbasd18m21 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_473864.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 864 Score = 400 bits (202), Expect = e-108 Identities = 337/382 (88%) Strand = Plus / Minus Query: 242 actagcacgtgatcagggtgcgacagcttcagctggctgaagtatcgggacgacggtttg 301 |||||||| ||||| ||||| || || ||||||||||||| ||||| || ||||||||| Sbjct: 806 actagcacatgatcggggtgtgatagtttcagctggctgaggtatcttgatgacggtttg 747 Query: 302 ccaaggtggagattacatacaataagattggcaagagtttcaggatcctttgcgtccttg 361 ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||| Sbjct: 746 ccaaggtggagattacacacaataagattagcaagagtttcaggatcttttgcatccttg 687 Query: 362 tttagggcttcaagcaatagagtttcagcctcctcaaagctccccatatgcatacagcaa 421 || | ||||| || || ||||| |||||||| |||||||||||||| |||||||||||| Sbjct: 686 ttcaatgcttcgagtaaaagagtctcagcctcatcaaagctccccatgtgcatacagcaa 627 Query: 422 actgccttgccattaagaaccattcctgtcatagggtacttctcagcaaagtcctggaat 481 |||||||||||||| ||||||||||||||||| ||||| || ||||||||||| |||||| Sbjct: 626 actgccttgccatttagaaccattcctgtcatcgggtatttttcagcaaagtcttggaat 567 Query: 482 atgagataagcttcccggatcttagagccgccaacagcgatatcaagccaagcatttgct 541 ||||| |||||||| |||||||||||||| |||||||| || || ||||| || ||||| Sbjct: 566 atgaggtaagcttcacggatcttagagccaccaacagcaatgtccagccatgcgtttgca 507 Query: 542 agttgtgtcagtgtatggtcctcgtcagtttgttgcatgatcttcagttgcttgtcagca 601 ||||||||||||||||||||||| ||| | |||||||||||||| | |||||| || ||| Sbjct: 506 agttgtgtcagtgtatggtcctcatcaatctgttgcatgatctttaattgcttctcggca 447 Query: 602 taatctgagcggtgcatcttaa 623 || ||||| ||||||||||||| Sbjct: 446 tagtctgaacggtgcatcttaa 425
>dbj|AK104427.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-A04, full insert sequence Length = 1207 Score = 400 bits (202), Expect = e-108 Identities = 337/382 (88%) Strand = Plus / Minus Query: 242 actagcacgtgatcagggtgcgacagcttcagctggctgaagtatcgggacgacggtttg 301 |||||||| ||||| ||||| || || ||||||||||||| ||||| || ||||||||| Sbjct: 938 actagcacatgatcggggtgtgatagtttcagctggctgaggtatcttgatgacggtttg 879 Query: 302 ccaaggtggagattacatacaataagattggcaagagtttcaggatcctttgcgtccttg 361 ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||| Sbjct: 878 ccaaggtggagattacacacaataagattagcaagagtttcaggatcttttgcatccttg 819 Query: 362 tttagggcttcaagcaatagagtttcagcctcctcaaagctccccatatgcatacagcaa 421 || | ||||| || || ||||| |||||||| |||||||||||||| |||||||||||| Sbjct: 818 ttcaatgcttcgagtaaaagagtctcagcctcatcaaagctccccatgtgcatacagcaa 759 Query: 422 actgccttgccattaagaaccattcctgtcatagggtacttctcagcaaagtcctggaat 481 |||||||||||||| ||||||||||||||||| ||||| || ||||||||||| |||||| Sbjct: 758 actgccttgccatttagaaccattcctgtcatcgggtatttttcagcaaagtcttggaat 699 Query: 482 atgagataagcttcccggatcttagagccgccaacagcgatatcaagccaagcatttgct 541 ||||| |||||||| |||||||||||||| |||||||| || || ||||| || ||||| Sbjct: 698 atgaggtaagcttcacggatcttagagccaccaacagcaatgtccagccatgcgtttgca 639 Query: 542 agttgtgtcagtgtatggtcctcgtcagtttgttgcatgatcttcagttgcttgtcagca 601 ||||||||||||||||||||||| ||| | |||||||||||||| | |||||| || ||| Sbjct: 638 agttgtgtcagtgtatggtcctcatcaatctgttgcatgatctttaattgcttctcggca 579 Query: 602 taatctgagcggtgcatcttaa 623 || ||||| ||||||||||||| Sbjct: 578 tagtctgaacggtgcatcttaa 557
>dbj|AK099008.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120E14, full insert sequence Length = 1218 Score = 400 bits (202), Expect = e-108 Identities = 337/382 (88%) Strand = Plus / Minus Query: 242 actagcacgtgatcagggtgcgacagcttcagctggctgaagtatcgggacgacggtttg 301 |||||||| ||||| ||||| || || ||||||||||||| ||||| || ||||||||| Sbjct: 911 actagcacatgatcggggtgtgatagtttcagctggctgaggtatcttgatgacggtttg 852 Query: 302 ccaaggtggagattacatacaataagattggcaagagtttcaggatcctttgcgtccttg 361 ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||| Sbjct: 851 ccaaggtggagattacacacaataagattagcaagagtttcaggatcttttgcatccttg 792 Query: 362 tttagggcttcaagcaatagagtttcagcctcctcaaagctccccatatgcatacagcaa 421 || | ||||| || || ||||| |||||||| |||||||||||||| |||||||||||| Sbjct: 791 ttcaatgcttcgagtaaaagagtctcagcctcatcaaagctccccatgtgcatacagcaa 732 Query: 422 actgccttgccattaagaaccattcctgtcatagggtacttctcagcaaagtcctggaat 481 |||||||||||||| ||||||||||||||||| ||||| || ||||||||||| |||||| Sbjct: 731 actgccttgccatttagaaccattcctgtcatcgggtatttttcagcaaagtcttggaat 672 Query: 482 atgagataagcttcccggatcttagagccgccaacagcgatatcaagccaagcatttgct 541 ||||| |||||||| |||||||||||||| |||||||| || || ||||| || ||||| Sbjct: 671 atgaggtaagcttcacggatcttagagccaccaacagcaatgtccagccatgcgtttgca 612 Query: 542 agttgtgtcagtgtatggtcctcgtcagtttgttgcatgatcttcagttgcttgtcagca 601 ||||||||||||||||||||||| ||| | |||||||||||||| | |||||| || ||| Sbjct: 611 agttgtgtcagtgtatggtcctcatcaatctgttgcatgatctttaattgcttctcggca 552 Query: 602 taatctgagcggtgcatcttaa 623 || ||||| ||||||||||||| Sbjct: 551 tagtctgaacggtgcatcttaa 530
>dbj|AK060707.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H03, full insert sequence Length = 1262 Score = 400 bits (202), Expect = e-108 Identities = 337/382 (88%) Strand = Plus / Minus Query: 242 actagcacgtgatcagggtgcgacagcttcagctggctgaagtatcgggacgacggtttg 301 |||||||| ||||| ||||| || || ||||||||||||| ||||| || ||||||||| Sbjct: 936 actagcacatgatcggggtgtgatagtttcagctggctgaggtatcttgatgacggtttg 877 Query: 302 ccaaggtggagattacatacaataagattggcaagagtttcaggatcctttgcgtccttg 361 ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||| Sbjct: 876 ccaaggtggagattacacacaataagattagcaagagtttcaggatcttttgcatccttg 817 Query: 362 tttagggcttcaagcaatagagtttcagcctcctcaaagctccccatatgcatacagcaa 421 || | ||||| || || ||||| |||||||| |||||||||||||| |||||||||||| Sbjct: 816 ttcaatgcttcgagtaaaagagtctcagcctcatcaaagctccccatgtgcatacagcaa 757 Query: 422 actgccttgccattaagaaccattcctgtcatagggtacttctcagcaaagtcctggaat 481 |||||||||||||| ||||||||||||||||| ||||| || ||||||||||| |||||| Sbjct: 756 actgccttgccatttagaaccattcctgtcatcgggtatttttcagcaaagtcttggaat 697 Query: 482 atgagataagcttcccggatcttagagccgccaacagcgatatcaagccaagcatttgct 541 ||||| |||||||| |||||||||||||| |||||||| || || ||||| || ||||| Sbjct: 696 atgaggtaagcttcacggatcttagagccaccaacagcaatgtccagccatgcgtttgca 637 Query: 542 agttgtgtcagtgtatggtcctcgtcagtttgttgcatgatcttcagttgcttgtcagca 601 ||||||||||||||||||||||| ||| | |||||||||||||| | |||||| || ||| Sbjct: 636 agttgtgtcagtgtatggtcctcatcaatctgttgcatgatctttaattgcttctcggca 577 Query: 602 taatctgagcggtgcatcttaa 623 || ||||| ||||||||||||| Sbjct: 576 tagtctgaacggtgcatcttaa 555
>dbj|AB042115.1| Oryza sativa (japonica cultivar-group) cope1 mRNA for epsilon1-COP, complete cds Length = 1207 Score = 400 bits (202), Expect = e-108 Identities = 337/382 (88%) Strand = Plus / Minus Query: 242 actagcacgtgatcagggtgcgacagcttcagctggctgaagtatcgggacgacggtttg 301 |||||||| ||||| ||||| || || ||||||||||||| ||||| || ||||||||| Sbjct: 928 actagcacatgatcggggtgtgatagtttcagctggctgaggtatcttgatgacggtttg 869 Query: 302 ccaaggtggagattacatacaataagattggcaagagtttcaggatcctttgcgtccttg 361 ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||| Sbjct: 868 ccaaggtggagattacacacaataagattagcaagagtttcaggatcttttgcatccttg 809 Query: 362 tttagggcttcaagcaatagagtttcagcctcctcaaagctccccatatgcatacagcaa 421 || | ||||| || || ||||| |||||||| |||||||||||||| |||||||||||| Sbjct: 808 ttcaatgcttcgagtaaaagagtctcagcctcatcaaagctccccatgtgcatacagcaa 749 Query: 422 actgccttgccattaagaaccattcctgtcatagggtacttctcagcaaagtcctggaat 481 |||||||||||||| ||||||||||||||||| ||||| || ||||||||||| |||||| Sbjct: 748 actgccttgccatttagaaccattcctgtcatcgggtatttttcagcaaagtcttggaat 689 Query: 482 atgagataagcttcccggatcttagagccgccaacagcgatatcaagccaagcatttgct 541 ||||| |||||||| |||||||||||||| |||||||| || || ||||| || ||||| Sbjct: 688 atgaggtaagcttcacggatcttagagccaccaacagcaatgtccagccatgcgtttgca 629 Query: 542 agttgtgtcagtgtatggtcctcgtcagtttgttgcatgatcttcagttgcttgtcagca 601 ||||||||||||||||||||||| ||| | |||||||||||||| | |||||| || ||| Sbjct: 628 agttgtgtcagtgtatggtcctcatcaatctgttgcatgatctttaattgcttctcggca 569 Query: 602 taatctgagcggtgcatcttaa 623 || ||||| ||||||||||||| Sbjct: 568 tagtctgaacggtgcatcttaa 547
>gb|BT016527.1| Zea mays clone Contig360 mRNA sequence Length = 1201 Score = 391 bits (197), Expect = e-105 Identities = 338/385 (87%) Strand = Plus / Minus Query: 237 tcttaactagcacgtgatcagggtgcgacagcttcagctggctgaagtatcgggacgacg 296 ||||||||||||| || ||||| ||||| |||||||||||||||| |||||| || || | Sbjct: 924 tcttaactagcacatggtcaggatgcgatagcttcagctggctgaggtatcgtgatgatg 865 Query: 297 gtttgccaaggtggagattacatacaataagattggcaagagtttcaggatcctttgcgt 356 ||||||| | |||||||||||||||||| ||||| ||||||||||||||||| ||||||| Sbjct: 864 gtttgcctaagtggagattacatacaattagattcgcaagagtttcaggatcttttgcgt 805 Query: 357 ccttgtttagggcttcaagcaatagagtttcagcctcctcaaagctccccatatgcatac 416 ||||||| | ||||||||||| ||||| ||||||||||||||||| ||||| ||||||| Sbjct: 804 ccttgttcaacgcttcaagcaacagagtctcagcctcctcaaagcttcccatgtgcatac 745 Query: 417 agcaaactgccttgccattaagaaccattcctgtcatagggtacttctcagcaaagtcct 476 |||| |||||||| || || | |||||| |||||||| |||||||| ||||||||||| | Sbjct: 744 agcagactgccttcccgtttaaaaccatccctgtcattgggtacttttcagcaaagtctt 685 Query: 477 ggaatatgagataagcttcccggatcttagagccgccaacagcgatatcaagccaagcat 536 ||||||||||||||||||| ||||||||||||||||||||||| || | | ||| || | Sbjct: 684 ggaatatgagataagcttcacggatcttagagccgccaacagcaatgcccaaccatgcgt 625 Query: 537 ttgctagttgtgtcagtgtatggtcctcgtcagtttgttgcatgatcttcagttgcttgt 596 |||| |||||||| ||||||||||| || ||| |||||||||||||||||| |||||| | Sbjct: 624 ttgcaagttgtgtaagtgtatggtcttcatcaatttgttgcatgatcttcaattgcttct 565 Query: 597 cagcataatctgagcggtgcatctt 621 ||||||| ||||| || |||||||| Sbjct: 564 cagcatagtctgaacgatgcatctt 540
>gb|AF216853.1|AF216853 Zea mays epsilon-COP mRNA, complete cds Length = 1180 Score = 391 bits (197), Expect = e-105 Identities = 338/385 (87%) Strand = Plus / Minus Query: 237 tcttaactagcacgtgatcagggtgcgacagcttcagctggctgaagtatcgggacgacg 296 ||||||||||||| || ||||| ||||| |||||||||||||||| |||||| || || | Sbjct: 914 tcttaactagcacatggtcaggatgcgatagcttcagctggctgaggtatcgtgatgatg 855 Query: 297 gtttgccaaggtggagattacatacaataagattggcaagagtttcaggatcctttgcgt 356 ||||||| | |||||||||||||||||| ||||| ||||||||||||||||| ||||||| Sbjct: 854 gtttgcctaagtggagattacatacaattagattcgcaagagtttcaggatcttttgcgt 795 Query: 357 ccttgtttagggcttcaagcaatagagtttcagcctcctcaaagctccccatatgcatac 416 ||||||| | ||||||||||| ||||| ||||||||||||||||| ||||| ||||||| Sbjct: 794 ccttgttcaacgcttcaagcaacagagtctcagcctcctcaaagcttcccatgtgcatac 735 Query: 417 agcaaactgccttgccattaagaaccattcctgtcatagggtacttctcagcaaagtcct 476 |||| |||||||| || || | |||||| |||||||| |||||||| ||||||||||| | Sbjct: 734 agcagactgccttcccgtttaaaaccatccctgtcattgggtacttttcagcaaagtctt 675 Query: 477 ggaatatgagataagcttcccggatcttagagccgccaacagcgatatcaagccaagcat 536 ||||||||||||||||||| |||||||||||||| |||||||| || | ||||| || | Sbjct: 674 ggaatatgagataagcttcacggatcttagagccaccaacagcaatgcccagccatgcgt 615 Query: 537 ttgctagttgtgtcagtgtatggtcctcgtcagtttgttgcatgatcttcagttgcttgt 596 |||| |||||||| ||||||||||| || ||| |||||||||||||||||| |||||| | Sbjct: 614 ttgcaagttgtgtaagtgtatggtcttcatcaatttgttgcatgatcttcaattgcttct 555 Query: 597 cagcataatctgagcggtgcatctt 621 ||||||| ||||| || |||||||| Sbjct: 554 cagcatagtctgaacgatgcatctt 530
>gb|AY105373.1| Zea mays PCO148993 mRNA sequence Length = 1262 Score = 391 bits (197), Expect = e-105 Identities = 338/385 (87%) Strand = Plus / Minus Query: 237 tcttaactagcacgtgatcagggtgcgacagcttcagctggctgaagtatcgggacgacg 296 ||||||||||||| || ||||| ||||| |||||||||||||||| |||||| || || | Sbjct: 914 tcttaactagcacatggtcaggatgcgatagcttcagctggctgaggtatcgtgatgatg 855 Query: 297 gtttgccaaggtggagattacatacaataagattggcaagagtttcaggatcctttgcgt 356 ||||||| | |||||||||||||||||| ||||| ||||||||||||||||| ||||||| Sbjct: 854 gtttgcctaagtggagattacatacaattagattcgcaagagtttcaggatcttttgcgt 795 Query: 357 ccttgtttagggcttcaagcaatagagtttcagcctcctcaaagctccccatatgcatac 416 ||||||| | ||||||||||| ||||| ||||||||||||||||| ||||| ||||||| Sbjct: 794 ccttgttcaacgcttcaagcaacagagtctcagcctcctcaaagcttcccatgtgcatac 735 Query: 417 agcaaactgccttgccattaagaaccattcctgtcatagggtacttctcagcaaagtcct 476 |||| |||||||| || || | |||||| |||||||| |||||||| ||||||||||| | Sbjct: 734 agcagactgccttcccgtttaaaaccatccctgtcattgggtacttttcagcaaagtctt 675 Query: 477 ggaatatgagataagcttcccggatcttagagccgccaacagcgatatcaagccaagcat 536 ||||||||||||||||||| |||||||||||||| |||||||| || | ||||| || | Sbjct: 674 ggaatatgagataagcttcacggatcttagagccaccaacagcaatgcccagccatgcgt 615 Query: 537 ttgctagttgtgtcagtgtatggtcctcgtcagtttgttgcatgatcttcagttgcttgt 596 |||| |||||||| ||||||||||| || ||| |||||||||||||||||| |||||| | Sbjct: 614 ttgcaagttgtgtaagtgtatggtcttcatcaatttgttgcatgatcttcaattgcttct 555 Query: 597 cagcataatctgagcggtgcatctt 621 ||||||| ||||| || |||||||| Sbjct: 554 cagcatagtctgaacgatgcatctt 530
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence Length = 160484 Score = 180 bits (91), Expect = 4e-42 Identities = 121/131 (92%) Strand = Plus / Plus Query: 380 agagtttcagcctcctcaaagctccccatatgcatacagcaaactgccttgccattaaga 439 ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| ||| Sbjct: 82301 agagtctcagcctcatcaaagctccccatgtgcatacagcaaactgccttgccatttaga 82360 Query: 440 accattcctgtcatagggtacttctcagcaaagtcctggaatatgagataagcttcccgg 499 |||||||||||||| ||||| || ||||||||||| ||||||||||| |||||||| ||| Sbjct: 82361 accattcctgtcatcgggtatttttcagcaaagtcttggaatatgaggtaagcttcacgg 82420 Query: 500 atcttagagcc 510 ||||||||||| Sbjct: 82421 atcttagagcc 82431 Score = 101 bits (51), Expect = 3e-18 Identities = 96/111 (86%) Strand = Plus / Plus Query: 513 caacagcgatatcaagccaagcatttgctagttgtgtcagtgtatggtcctcgtcagttt 572 ||||||| || || ||||| || ||||| ||||||||||||||||||||||| ||| | | Sbjct: 82561 caacagcaatgtccagccatgcgtttgcaagttgtgtcagtgtatggtcctcatcaatct 82620 Query: 573 gttgcatgatcttcagttgcttgtcagcataatctgagcggtgcatcttaa 623 ||||||||||||| | |||||| || ||||| ||||| ||||||||||||| Sbjct: 82621 gttgcatgatctttaattgcttctcggcatagtctgaacggtgcatcttaa 82671 Score = 101 bits (51), Expect = 3e-18 Identities = 63/67 (94%) Strand = Plus / Plus Query: 293 gacggtttgccaaggtggagattacatacaataagattggcaagagtttcaggatccttt 352 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| Sbjct: 82064 gacggtttgccaaggtggagattacacacaataagattagcaagagtttcaggatctttt 82123 Query: 353 gcgtcct 359 || |||| Sbjct: 82124 gcatcct 82130
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 180 bits (91), Expect = 4e-42 Identities = 121/131 (92%) Strand = Plus / Plus Query: 380 agagtttcagcctcctcaaagctccccatatgcatacagcaaactgccttgccattaaga 439 ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| ||| Sbjct: 31100220 agagtctcagcctcatcaaagctccccatgtgcatacagcaaactgccttgccatttaga 31100279 Query: 440 accattcctgtcatagggtacttctcagcaaagtcctggaatatgagataagcttcccgg 499 |||||||||||||| ||||| || ||||||||||| ||||||||||| |||||||| ||| Sbjct: 31100280 accattcctgtcatcgggtatttttcagcaaagtcttggaatatgaggtaagcttcacgg 31100339 Query: 500 atcttagagcc 510 ||||||||||| Sbjct: 31100340 atcttagagcc 31100350 Score = 101 bits (51), Expect = 3e-18 Identities = 96/111 (86%) Strand = Plus / Plus Query: 513 caacagcgatatcaagccaagcatttgctagttgtgtcagtgtatggtcctcgtcagttt 572 ||||||| || || ||||| || ||||| ||||||||||||||||||||||| ||| | | Sbjct: 31100480 caacagcaatgtccagccatgcgtttgcaagttgtgtcagtgtatggtcctcatcaatct 31100539 Query: 573 gttgcatgatcttcagttgcttgtcagcataatctgagcggtgcatcttaa 623 ||||||||||||| | |||||| || ||||| ||||| ||||||||||||| Sbjct: 31100540 gttgcatgatctttaattgcttctcggcatagtctgaacggtgcatcttaa 31100590 Score = 101 bits (51), Expect = 3e-18 Identities = 63/67 (94%) Strand = Plus / Plus Query: 293 gacggtttgccaaggtggagattacatacaataagattggcaagagtttcaggatccttt 352 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| Sbjct: 31099983 gacggtttgccaaggtggagattacacacaataagattagcaagagtttcaggatctttt 31100042 Query: 353 gcgtcct 359 || |||| Sbjct: 31100043 gcatcct 31100049
>ref|NM_129037.3| Arabidopsis thaliana protein transporter AT2G34840 mRNA, complete cds Length = 1161 Score = 107 bits (54), Expect = 4e-20 Identities = 159/194 (81%) Strand = Plus / Minus Query: 320 acaataagattggcaagagtttcaggatcctttgcgtccttgtttagggcttcaagcaat 379 |||| |||||| ||||||||||| ||||| || || |||||||| || |||||||| | | Sbjct: 837 acaacaagatttgcaagagtttctggatctttagcatccttgttgagtgcttcaagaagt 778 Query: 380 agagtttcagcctcctcaaagctccccatatgcatacagcaaactgccttgccattaaga 439 || |||||||| || || ||| | ||||| |||||||||||||| || |||||||| | Sbjct: 777 agtgtttcagcttcatcgaagttacccatttgcatacagcaaacagctttgccattcaag 718 Query: 440 accattcctgtcatagggtacttctcagcaaagtcctggaatatgagataagcttcccgg 499 | || | |||||| ||||||||||||| ||| |||| ||| ||||||||||||||| | Sbjct: 717 atcaagcatgtcattgggtacttctcagaaaaatcctcgaaaatgagataagcttcctgt 658 Query: 500 atcttagagccgcc 513 ||||| || ||||| Sbjct: 657 atcttcgaaccgcc 644
>gb|AY142051.1| Arabidopsis thaliana At2g34840/F19I3.7 mRNA, complete cds Length = 882 Score = 107 bits (54), Expect = 4e-20 Identities = 159/194 (81%) Strand = Plus / Minus Query: 320 acaataagattggcaagagtttcaggatcctttgcgtccttgtttagggcttcaagcaat 379 |||| |||||| ||||||||||| ||||| || || |||||||| || |||||||| | | Sbjct: 746 acaacaagatttgcaagagtttctggatctttagcatccttgttgagtgcttcaagaagt 687 Query: 380 agagtttcagcctcctcaaagctccccatatgcatacagcaaactgccttgccattaaga 439 || |||||||| || || ||| | ||||| |||||||||||||| || |||||||| | Sbjct: 686 agtgtttcagcttcatcgaagttacccatttgcatacagcaaacagctttgccattcaag 627 Query: 440 accattcctgtcatagggtacttctcagcaaagtcctggaatatgagataagcttcccgg 499 | || | |||||| ||||||||||||| ||| |||| ||| ||||||||||||||| | Sbjct: 626 atcaagcatgtcattgggtacttctcagaaaaatcctcgaaaatgagataagcttcctgt 567 Query: 500 atcttagagccgcc 513 ||||| || ||||| Sbjct: 566 atcttcgaaccgcc 553
>gb|AY075627.1| Arabidopsis thaliana At2g34840/F19I3.7 mRNA, complete cds Length = 1129 Score = 107 bits (54), Expect = 4e-20 Identities = 159/194 (81%) Strand = Plus / Minus Query: 320 acaataagattggcaagagtttcaggatcctttgcgtccttgtttagggcttcaagcaat 379 |||| |||||| ||||||||||| ||||| || || |||||||| || |||||||| | | Sbjct: 805 acaacaagatttgcaagagtttctggatctttagcatccttgttgagtgcttcaagaagt 746 Query: 380 agagtttcagcctcctcaaagctccccatatgcatacagcaaactgccttgccattaaga 439 || |||||||| || || ||| | ||||| |||||||||||||| || |||||||| | Sbjct: 745 agtgtttcagcttcatcgaagttacccatttgcatacagcaaacagctttgccattcaag 686 Query: 440 accattcctgtcatagggtacttctcagcaaagtcctggaatatgagataagcttcccgg 499 | || | |||||| ||||||||||||| ||| |||| ||| ||||||||||||||| | Sbjct: 685 atcaagcatgtcattgggtacttctcagaaaaatcctcgaaaatgagataagcttcctgt 626 Query: 500 atcttagagccgcc 513 ||||| || ||||| Sbjct: 625 atcttcgaaccgcc 612
>gb|BT014249.1| Lycopersicon esculentum clone 133451F, mRNA sequence Length = 1320 Score = 83.8 bits (42), Expect = 6e-13 Identities = 78/90 (86%) Strand = Plus / Minus Query: 346 atcctttgcgtccttgtttagggcttcaagcaatagagtttcagcctcctcaaagctccc 405 |||||||| |||||||||||||||||||||||| || || ||||| || ||||| |||| Sbjct: 800 atcctttgtgtccttgtttagggcttcaagcaacagtgtctcagcttcgtcaaaattccc 741 Query: 406 catatgcatacagcaaactgccttgccatt 435 ||| ||||| |||||||| ||||| ||||| Sbjct: 740 catgtgcatgcagcaaacagccttcccatt 711
>ref|NM_102800.2| Arabidopsis thaliana protein transporter AT1G30630 mRNA, complete cds Length = 1199 Score = 81.8 bits (41), Expect = 3e-12 Identities = 134/165 (81%) Strand = Plus / Minus Query: 332 gcaagagtttcaggatcctttgcgtccttgtttagggcttcaagcaatagagtttcagcc 391 ||||||||||| || || || || |||||||| || |||||||| | |||||| ||||| Sbjct: 819 gcaagagtttctgggtctttagcatccttgttgagtgcttcaagtagtagagtctcagct 760 Query: 392 tcctcaaagctccccatatgcatacagcaaactgccttgccattaagaaccattcctgtc 451 || ||||| | ||||||||||| ||||||||||| ||||| || | | || | |||| Sbjct: 759 tcttcaaaattacccatatgcatgcagcaaactgctttgccgttcaagatcaagcttgtc 700 Query: 452 atagggtacttctcagcaaagtcctggaatatgagataagcttcc 496 || ||||||||||||| || |||||||| || |||||||||||| Sbjct: 699 attgggtacttctcagagaaatcctggaagattagataagcttcc 655
>gb|AF348588.1| Arabidopsis thaliana putative coatomer protein, epsilon subunit (At1g30630) mRNA, complete cds Length = 879 Score = 81.8 bits (41), Expect = 3e-12 Identities = 134/165 (81%) Strand = Plus / Minus Query: 332 gcaagagtttcaggatcctttgcgtccttgtttagggcttcaagcaatagagtttcagcc 391 ||||||||||| || || || || |||||||| || |||||||| | |||||| ||||| Sbjct: 731 gcaagagtttctgggtctttagcatccttgttgagtgcttcaagtagtagagtctcagct 672 Query: 392 tcctcaaagctccccatatgcatacagcaaactgccttgccattaagaaccattcctgtc 451 || ||||| | ||||||||||| ||||||||||| ||||| || | | || | |||| Sbjct: 671 tcttcaaaattacccatatgcatgcagcaaactgctttgccgttcaagatcaagcttgtc 612 Query: 452 atagggtacttctcagcaaagtcctggaatatgagataagcttcc 496 || ||||||||||||| || |||||||| || |||||||||||| Sbjct: 611 attgggtacttctcagagaaatcctggaagattagataagcttcc 567
>gb|AY063113.1| Arabidopsis thaliana putative coatomer protein, epsilon subunit (At1g30630) mRNA, complete cds Length = 910 Score = 81.8 bits (41), Expect = 3e-12 Identities = 134/165 (81%) Strand = Plus / Minus Query: 332 gcaagagtttcaggatcctttgcgtccttgtttagggcttcaagcaatagagtttcagcc 391 ||||||||||| || || || || |||||||| || |||||||| | |||||| ||||| Sbjct: 731 gcaagagtttctgggtctttagcatccttgttgagtgcttcaagtagtagagtctcagct 672 Query: 392 tcctcaaagctccccatatgcatacagcaaactgccttgccattaagaaccattcctgtc 451 || ||||| | ||||||||||| ||||||||||| ||||| || | | || | |||| Sbjct: 671 tcttcaaaattacccatatgcatgcagcaaactgctttgccgttcaagatcaagcttgtc 612 Query: 452 atagggtacttctcagcaaagtcctggaatatgagataagcttcc 496 || ||||||||||||| || |||||||| || |||||||||||| Sbjct: 611 attgggtacttctcagagaaatcctggaagattagataagcttcc 567
>gb|AF370325.1| Arabidopsis thaliana putative coatomer protein, epsilon subunit (At1g30630) mRNA, complete cds Length = 1172 Score = 81.8 bits (41), Expect = 3e-12 Identities = 134/165 (81%) Strand = Plus / Minus Query: 332 gcaagagtttcaggatcctttgcgtccttgtttagggcttcaagcaatagagtttcagcc 391 ||||||||||| || || || || |||||||| || |||||||| | |||||| ||||| Sbjct: 794 gcaagagtttctgggtctttagcatccttgttgagtgcttcaagtagtagagtctcagct 735 Query: 392 tcctcaaagctccccatatgcatacagcaaactgccttgccattaagaaccattcctgtc 451 || ||||| | ||||||||||| ||||||||||| ||||| || | | || | |||| Sbjct: 734 tcttcaaaattacccatatgcatgcagcaaactgctttgccgttcaagatcaagcttgtc 675 Query: 452 atagggtacttctcagcaaagtcctggaatatgagataagcttcc 496 || ||||||||||||| || |||||||| || |||||||||||| Sbjct: 674 attgggtacttctcagagaaatcctggaagattagataagcttcc 630
>gb|AC004238.3| Arabidopsis thaliana chromosome 2 clone F19I3 map ve016, complete sequence Length = 108484 Score = 81.8 bits (41), Expect = 3e-12 Identities = 128/157 (81%) Strand = Plus / Minus Query: 357 ccttgtttagggcttcaagcaatagagtttcagcctcctcaaagctccccatatgcatac 416 ||||||| || |||||||| | ||| |||||||| || || ||| | ||||| ||||||| Sbjct: 32345 ccttgttgagtgcttcaagaagtagtgtttcagcttcatcgaagttacccatttgcatac 32286 Query: 417 agcaaactgccttgccattaagaaccattcctgtcatagggtacttctcagcaaagtcct 476 ||||||| || |||||||| | | || | |||||| ||||||||||||| ||| |||| Sbjct: 32285 agcaaacagctttgccattcaagatcaagcatgtcattgggtacttctcagaaaaatcct 32226 Query: 477 ggaatatgagataagcttcccggatcttagagccgcc 513 ||| ||||||||||||||| | ||||| || ||||| Sbjct: 32225 cgaaaatgagataagcttcctgtatcttcgaaccgcc 32189
>emb|BX814680.1|CNS0AEHW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB89ZB12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 640 Score = 81.8 bits (41), Expect = 3e-12 Identities = 134/165 (81%) Strand = Plus / Minus Query: 332 gcaagagtttcaggatcctttgcgtccttgtttagggcttcaagcaatagagtttcagcc 391 ||||||||||| || || || || |||||||| || |||||||| | |||||| ||||| Sbjct: 276 gcaagagtttctgggtctttagcatccttgttgagtgcttcaagtagtagagtctcagct 217 Query: 392 tcctcaaagctccccatatgcatacagcaaactgccttgccattaagaaccattcctgtc 451 || ||||| | ||||||||||| ||||||||||| ||||| || | | || | |||| Sbjct: 216 tcttcaaaattacccatatgcatgcagcaaactgctttgccgttcaagagcaagcttgtc 157 Query: 452 atagggtacttctcagcaaagtcctggaatatgagataagcttcc 496 || ||||||||||||| || |||||||| || |||||||||||| Sbjct: 156 attgggtacttctcagagaaatcctggaagattagataagcttcc 112
>emb|BX814617.1|CNS0ADQB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB84ZH02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1174 Score = 81.8 bits (41), Expect = 3e-12 Identities = 134/165 (81%) Strand = Plus / Minus Query: 332 gcaagagtttcaggatcctttgcgtccttgtttagggcttcaagcaatagagtttcagcc 391 ||||||||||| || || || || |||||||| || |||||||| | |||||| ||||| Sbjct: 794 gcaagagtttctgggtctttagcatccttgttgagtgcttcaagtagtagagtctcagct 735 Query: 392 tcctcaaagctccccatatgcatacagcaaactgccttgccattaagaaccattcctgtc 451 || ||||| | ||||||||||| ||||||||||| ||||| || | | || | |||| Sbjct: 734 tcttcaaaattacccatatgcatgcagcaaactgctttgccgttcaagatcaagcttgtc 675 Query: 452 atagggtacttctcagcaaagtcctggaatatgagataagcttcc 496 || ||||||||||||| || |||||||| || |||||||||||| Sbjct: 674 attgggtacttctcagagaaatcctggaagattagataagcttcc 630
>emb|BX841764.1|CNS09Y7R Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB11ZC12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1136 Score = 81.8 bits (41), Expect = 3e-12 Identities = 134/165 (81%) Strand = Plus / Minus Query: 332 gcaagagtttcaggatcctttgcgtccttgtttagggcttcaagcaatagagtttcagcc 391 ||||||||||| || || || || |||||||| || |||||||| | |||||| ||||| Sbjct: 780 gcaagagtttctgggtctttagcatccttgttgagtgcttcaagtagtagagtctcagct 721 Query: 392 tcctcaaagctccccatatgcatacagcaaactgccttgccattaagaaccattcctgtc 451 || ||||| | ||||||||||| ||||||||||| ||||| || | | || | |||| Sbjct: 720 tcttcaaaattacccatatgcatgcagcaaactgctttgccgttcaagatcaagcttgtc 661 Query: 452 atagggtacttctcagcaaagtcctggaatatgagataagcttcc 496 || ||||||||||||| || |||||||| || |||||||||||| Sbjct: 660 attgggtacttctcagagaaatcctggaagattagataagcttcc 616
>gb|AY087474.1| Arabidopsis thaliana clone 35814 mRNA, complete sequence Length = 1189 Score = 81.8 bits (41), Expect = 3e-12 Identities = 134/165 (81%) Strand = Plus / Minus Query: 332 gcaagagtttcaggatcctttgcgtccttgtttagggcttcaagcaatagagtttcagcc 391 ||||||||||| || || || || |||||||| || |||||||| | |||||| ||||| Sbjct: 819 gcaagagtttctgggtctttagcatccttgttgagtgcttcaagtagtagagtctcagct 760 Query: 392 tcctcaaagctccccatatgcatacagcaaactgccttgccattaagaaccattcctgtc 451 || ||||| | ||||||||||| ||||||||||| ||||| || | | || | |||| Sbjct: 759 tcttcaaaattacccatatgcatgcagcaaactgctttgccgttcaagatcaagcttgtc 700 Query: 452 atagggtacttctcagcaaagtcctggaatatgagataagcttcc 496 || ||||||||||||| || |||||||| || |||||||||||| Sbjct: 699 attgggtacttctcagagaaatcctggaagattagataagcttcc 655
>gb|AC007060.3|T5I8 Arabidopsis thaliana chromosome 1 BAC T5I8 sequence, complete sequence Length = 96183 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Plus Query: 357 ccttgtttagggcttcaagcaatagagtttcagcctcctcaaagctccccatatgcatac 416 ||||||| || |||||||| | |||||| ||||| || ||||| | ||||||||||| | Sbjct: 34261 ccttgttgagtgcttcaagtagtagagtctcagcttcttcaaaattacccatatgcatgc 34320 Query: 417 agcaaactgccttgccattaagaaccattcctgtcatagggtacttctcagcaaagtcct 476 |||||||||| ||||| || | | || | |||||| ||||||||||||| || |||| Sbjct: 34321 agcaaactgctttgccgttcaagatcaagcttgtcattgggtacttctcagagaaatcct 34380 Query: 477 ggaatatgagataagcttcc 496 |||| || |||||||||||| Sbjct: 34381 ggaagattagataagcttcc 34400
>dbj|AB042114.1| Glycine max cope2 mRNA for epsilon2-COP, partial cds Length = 1223 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Minus Query: 296 ggtttgccaaggtggagattacatacaataagattggcaagagtttcaggatcctttgcg 355 |||||||| ||||| ||| ||||||| |||||||| |||||||| |||||| | || Sbjct: 752 ggtttgccgaggtgaagacagcatacaactagattggctagagtttctggatccctggca 693 Query: 356 tccttgtttagggcttcaagcaatagagtttcagcctcctcaaagctccccatatgcata 415 ||||||||||| ||||||| ||| || || || || || || ||| | ||||| ||||| Sbjct: 692 tccttgtttagagcttcaaccaaaagggtctcggcttcgtcgaagttgcccatgtgcatg 633 Query: 416 cagcaaactgccttgccatt 435 |||||||| ||||||||||| Sbjct: 632 cagcaaacagccttgccatt 613
>emb|AJ866984.1| Medicago truncatula mRNA for coatomer epsilon subunit (cope1 gene) Length = 870 Score = 69.9 bits (35), Expect = 1e-08 Identities = 98/119 (82%) Strand = Plus / Minus Query: 317 catacaataagattggcaagagtttcaggatcctttgcgtccttgtttagggcttcaagc 376 ||||||| |||||| || || ||||| |||||| | || |||||||| || ||||| | | Sbjct: 737 catacaacaagatttgccagtgtttctggatccctagcatccttgttgagtgcttccacc 678 Query: 377 aatagagtttcagcctcctcaaagctccccatatgcatacagcaaactgccttgccatt 435 || ||||| ||||| || |||||| | ||||| ||||| |||||||| ||||||||||| Sbjct: 677 aaaagagtctcagcttcatcaaagttacccatttgcatgcagcaaacagccttgccatt 619
>dbj|AB042113.1| Glycine max cope1 mRNA for epsilon1-COP, complete cds Length = 1269 Score = 69.9 bits (35), Expect = 1e-08 Identities = 98/119 (82%) Strand = Plus / Minus Query: 317 catacaataagattggcaagagtttcaggatcctttgcgtccttgtttagggcttcaagc 376 ||||||| |||||||| |||||||| |||||| | || |||||||| || ||||||| | Sbjct: 795 catacaactagattggctagagtttctggatccctggcatccttgttaagagcttcaacc 736 Query: 377 aatagagtttcagcctcctcaaagctccccatatgcatacagcaaactgccttgccatt 435 || || || ||||| || || ||| | ||||| ||||| |||||||| ||||||||||| Sbjct: 735 aaaagggtctcagcttcgtcgaagttgcccatgtgcatgcagcaaacagccttgccatt 677
>emb|BX814442.1|CNS0ADOH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB74ZA12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1145 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 448 tgtcatagggtacttctcagcaaagtcctggaatatgagataagcttcc 496 |||||| ||||||||||||| || |||||||| || |||||||||||| Sbjct: 692 tgtcattgggtacttctcagagaaatcctggaagattagataagcttcc 644
>gb|AE010372.1| Methanopyrus kandleri AV19 section 71 of 157 of the complete genome Length = 12580 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 213 agttatcctccgccgacgtggtg 235 ||||||||||||||||||||||| Sbjct: 6188 agttatcctccgccgacgtggtg 6166
>gb|AC113266.24| Papio anubis clone rp41-106a4, complete sequence Length = 193032 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 84 aacaatataaagcaaaaaccaatacaattca 114 ||||||||||||||||||| ||| ||||||| Sbjct: 155467 aacaatataaagcaaaaacgaattcaattca 155437
>gb|AC150687.3| Bos taurus BAC CH240-243M2 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 144223 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 84 aacaatataaagcaaaaaccaa 105 |||||||||||||||||||||| Sbjct: 58832 aacaatataaagcaaaaaccaa 58853
>gb|AC100212.8| Mus musculus chromosome 18, clone RP23-60D22, complete sequence Length = 225698 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 570 tttgttgcatgatcttcagtt 590 ||||||||||||||||||||| Sbjct: 30856 tttgttgcatgatcttcagtt 30876
>ref|XM_802105.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507277.10) partial mRNA Length = 1476 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 343 aggatcctttgcgtccttgtt 363 ||||||||||||||||||||| Sbjct: 921 aggatcctttgcgtccttgtt 901
>ref|XM_807142.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509895.100) partial mRNA Length = 1464 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 343 aggatcctttgcgtccttgtt 363 ||||||||||||||||||||| Sbjct: 921 aggatcctttgcgtccttgtt 901
>ref|XM_502196.1| Yarrowia lipolytica CLIB122, YALI0C23793g predicted mRNA Length = 1437 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 gacggtttgccaaggtggaga 313 ||||||||||||||||||||| Sbjct: 458 gacggtttgccaaggtggaga 478
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 293 gacggtttgccaaggtggaga 313 ||||||||||||||||||||| Sbjct: 3189546 gacggtttgccaaggtggaga 3189526
>ref|XM_635520.1| Dictyostelium discoideum hypothetical protein (DDB0204640), partial mRNA Length = 2166 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 aaagcaaaaaccaatacaat 111 |||||||||||||||||||| Sbjct: 583 aaagcaaaaaccaatacaat 602
>ref|NM_015094.1| Homo sapiens hypermethylated in cancer 2 (HIC2), mRNA Length = 6794 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 acagcttcagctggctgaag 283 |||||||||||||||||||| Sbjct: 3829 acagcttcagctggctgaag 3810
>gb|AC182395.3| Pan troglodytes BAC clone CH251-484N21 from chromosome 2, complete sequence Length = 176398 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aacaatataaagcaaaaacc 103 |||||||||||||||||||| Sbjct: 49378 aacaatataaagcaaaaacc 49359
>emb|CR762485.16| Zebrafish DNA sequence from clone DKEY-269K12 in linkage group 19, complete sequence Length = 171225 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 agattacatacaataagatt 330 |||||||||||||||||||| Sbjct: 145138 agattacatacaataagatt 145157
>ref|XM_743738.1| Aspergillus fumigatus Af293 glutamyl-tRNA(Gln) amidotransferase, subunit A (Afu7g06800) partial mRNA Length = 1482 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 512 ccaacagcgatatcaagcca 531 |||||||||||||||||||| Sbjct: 524 ccaacagcgatatcaagcca 505
>gb|BC009207.2| Homo sapiens hypermethylated in cancer 2, mRNA (cDNA clone IMAGE:3629289), partial cds Length = 2524 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 acagcttcagctggctgaag 283 |||||||||||||||||||| Sbjct: 763 acagcttcagctggctgaag 744
>gb|AC102384.8| Mus musculus chromosome 6, clone RP24-446I4, complete sequence Length = 150552 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 gatcttcagttgcttgtcag 599 |||||||||||||||||||| Sbjct: 65450 gatcttcagttgcttgtcag 65469
>gb|AC183832.3| Pan troglodytes BAC clone CH251-260G12 from chromosome 7, complete sequence Length = 179012 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 agaacaatataaagcaaaaa 101 |||||||||||||||||||| Sbjct: 8888 agaacaatataaagcaaaaa 8869
>emb|AL353666.11| Human DNA sequence from clone RP11-363O16 on chromosome 9, complete sequence Length = 63798 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 576 gcatgatcttcagttgcttg 595 |||||||||||||||||||| Sbjct: 63677 gcatgatcttcagttgcttg 63696
>gb|AC182640.3| Pan troglodytes BAC clone CH251-352K16 from chromosome 7, complete sequence Length = 180187 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 agaacaatataaagcaaaaa 101 |||||||||||||||||||| Sbjct: 175163 agaacaatataaagcaaaaa 175144
>gb|BC094787.1| Homo sapiens hypermethylated in cancer 2, mRNA (cDNA clone MGC:104729 IMAGE:30531041), complete cds Length = 4702 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 acagcttcagctggctgaag 283 |||||||||||||||||||| Sbjct: 3762 acagcttcagctggctgaag 3743
>dbj|AB028943.2| Homo sapiens mRNA for KIAA1020 protein, partial cds Length = 6793 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 acagcttcagctggctgaag 283 |||||||||||||||||||| Sbjct: 3829 acagcttcagctggctgaag 3810
>emb|BX469903.9| Zebrafish DNA sequence from clone CH211-46H12 in linkage group 23, complete sequence Length = 175747 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 agattacatacaataagatt 330 |||||||||||||||||||| Sbjct: 73401 agattacatacaataagatt 73420
>gb|AC122731.16| Pan troglodytes clone rp43-14d7, complete sequence Length = 166903 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aacaatataaagcaaaaacc 103 |||||||||||||||||||| Sbjct: 90431 aacaatataaagcaaaaacc 90450
>dbj|AK023021.1| Homo sapiens cDNA FLJ12959 fis, clone NT2RP2005600, highly similar to Homo sapiens mRNA for KIAA1020 protein Length = 2554 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 acagcttcagctggctgaag 283 |||||||||||||||||||| Sbjct: 1630 acagcttcagctggctgaag 1611
>gb|AC091799.5| Homo sapiens BAC clone RP11-416N13 from 7, complete sequence Length = 48680 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 agaacaatataaagcaaaaa 101 |||||||||||||||||||| Sbjct: 42240 agaacaatataaagcaaaaa 42259
>gb|AC172375.3| Pan troglodytes BAC clone CH251-541M22 from chromosome unknown, complete sequence Length = 207989 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 100 aaccaatacaattcactctgttaa 123 ||||||||||||||||| |||||| Sbjct: 193956 aaccaatacaattcactatgttaa 193933
>gb|AC007957.37| Homo sapiens chromosome 22 clone b445 map 22q11, complete sequence Length = 212651 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 acagcttcagctggctgaag 283 |||||||||||||||||||| Sbjct: 113648 acagcttcagctggctgaag 113629
>gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complete sequence Length = 132753 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aacaatataaagcaaaaacc 103 |||||||||||||||||||| Sbjct: 31836 aacaatataaagcaaaaacc 31817
>gb|AC013269.10| Homo sapiens BAC clone RP11-356I10 from 2, complete sequence Length = 165797 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aacaatataaagcaaaaacc 103 |||||||||||||||||||| Sbjct: 157979 aacaatataaagcaaaaacc 157960 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aacaatataaagcaaaaacc 103 |||||||||||||||||||| Sbjct: 38673 aacaatataaagcaaaaacc 38692
>gb|AC018804.9| Homo sapiens BAC clone RP11-397H17 from 2, complete sequence Length = 195514 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aacaatataaagcaaaaacc 103 |||||||||||||||||||| Sbjct: 126320 aacaatataaagcaaaaacc 126301
>gb|AC093838.3| Homo sapiens BAC clone RP11-433A19 from 2, complete sequence Length = 178029 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aacaatataaagcaaaaacc 103 |||||||||||||||||||| Sbjct: 78991 aacaatataaagcaaaaacc 78972
>gb|AC140481.3| Homo sapiens BAC clone RP11-1216L17 from 2, complete sequence Length = 219471 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aacaatataaagcaaaaacc 103 |||||||||||||||||||| Sbjct: 170611 aacaatataaagcaaaaacc 170630
>gb|AC009404.5| Homo sapiens BAC clone RP11-28H22 from 2, complete sequence Length = 112883 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 100 aaccaatacaattcactctgttaa 123 ||||||||||||||||| |||||| Sbjct: 6315 aaccaatacaattcactatgttaa 6292
>gb|AC158407.1| Mus musculus BAC RP23-23E11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 187033 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 580 gatcttcagttgcttgtcag 599 |||||||||||||||||||| Sbjct: 7483 gatcttcagttgcttgtcag 7464
>emb|BX649545.14| Zebrafish DNA sequence from clone CH211-9N13 in linkage group 19, complete sequence Length = 169802 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 agattacatacaataagatt 330 |||||||||||||||||||| Sbjct: 101467 agattacatacaataagatt 101486
>emb|BX119915.8| Zebrafish DNA sequence from clone CH211-10J20 in linkage group 20, complete sequence Length = 90306 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 agattacatacaataagatt 330 |||||||||||||||||||| Sbjct: 17210 agattacatacaataagatt 17191
>dbj|AP000557.2| Homo sapiens genomic DNA, chromosome 22q11.2, BCRL2 region, clone:KB1323B2 Length = 150036 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 acagcttcagctggctgaag 283 |||||||||||||||||||| Sbjct: 18713 acagcttcagctggctgaag 18694
>dbj|AP000556.2| Homo sapiens genomic DNA, chromosome 22q11.2, BCRL2 region, clone:KB1172D5 Length = 149618 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 acagcttcagctggctgaag 283 |||||||||||||||||||| Sbjct: 98538 acagcttcagctggctgaag 98519 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,982,213 Number of Sequences: 3902068 Number of extensions: 4982213 Number of successful extensions: 94388 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94226 Number of HSP's gapped (non-prelim): 161 length of query: 626 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 603 effective length of database: 17,143,297,704 effective search space: 10337408515512 effective search space used: 10337408515512 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)