ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd18m18 |
|---|---|
| Clone Library Name | barley_pub |
>SCO1_HUMAN (O75880) SCO1 protein homolog, mitochondrial precursor| Length = 301 Score = 162 bits (410), Expect = 1e-39 Identities = 76/154 (49%), Positives = 106/154 (68%), Gaps = 2/154 (1%) Frame = -3 Query: 713 HDGKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXIV-PVFISVD 537 H G+ T+KD+LG+W L+YFGFTHCPD+CP+EL+KM + P+FIS+D Sbjct: 145 HTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISID 204 Query: 536 PERDTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYMK-TEEEGSDYLVDHSIVM 360 PERDT E + +YVKEF L+GLTGT +EV +VARAYRVYY ++E DY+VDH+I+M Sbjct: 205 PERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIM 264 Query: 359 YLMNPKMEFVKFFGKNYDEDTLAEGIIKEIREHK 258 YL+ P EF+ +FG+N + +A I +R ++ Sbjct: 265 YLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYR 298
>SCO2_HUMAN (O43819) SCO2 protein homolog, mitochondrial precursor| Length = 266 Score = 144 bits (363), Expect = 3e-34 Identities = 68/157 (43%), Positives = 103/157 (65%), Gaps = 2/157 (1%) Frame = -3 Query: 719 LNHDGKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXIV-PVFIS 543 L+H G+A + DF G+W L+YFGFTHCPDICPDEL+K+ V PVFI+ Sbjct: 107 LDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFIT 166 Query: 542 VDPERDTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYY-MKTEEEGSDYLVDHSI 366 VDPERD VE + YV++FH L+GLTG++ +V + + +YRVYY ++E DY+VDHSI Sbjct: 167 VDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSI 226 Query: 365 VMYLMNPKMEFVKFFGKNYDEDTLAEGIIKEIREHKS 255 +YL+NP F ++G++ + +++ + + + +S Sbjct: 227 AIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAFRS 263
>SCO1_YEAST (P23833) Protein SCO1, mitochondrial precursor| Length = 295 Score = 143 bits (361), Expect = 5e-34 Identities = 65/151 (43%), Positives = 97/151 (64%), Gaps = 2/151 (1%) Frame = -3 Query: 707 GKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXIVPVFISVDPER 528 G TEK+ LGK++++YFGF++CPDICPDEL K+ + P+FI+ DP R Sbjct: 126 GNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPAR 185 Query: 527 DTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYM--KTEEEGSDYLVDHSIVMYL 354 D+ + +Y+ +FH ++GLTGT DEV+ + YRVY+ + G DYLVDHSI YL Sbjct: 186 DSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYL 245 Query: 353 MNPKMEFVKFFGKNYDEDTLAEGIIKEIREH 261 M+P+ +FV G+NYDE T + I++ ++ + Sbjct: 246 MDPEGQFVDALGRNYDEKTGVDKIVEHVKSY 276
>SCO2_YEAST (P38072) Protein SCO2, mitochondrial precursor| Length = 301 Score = 139 bits (350), Expect = 9e-33 Identities = 65/152 (42%), Positives = 100/152 (65%), Gaps = 2/152 (1%) Frame = -3 Query: 710 DGKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXIVPVFISVDPE 531 +GK TE++ GK+++LYFGF+HCPDICP+EL ++ I P+FIS DP Sbjct: 131 NGKPFTEENLKGKFSILYFGFSHCPDICPEELDRLTYWISELDDKDHIKIQPLFISCDPA 190 Query: 530 RDTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYM--KTEEEGSDYLVDHSIVMY 357 RDT + + +Y+ +FH +IGLTGT D+V+ V + Y+VY+ + + DYLVDHSI Y Sbjct: 191 RDTPDVLKEYLSDFHPAIIGLTGTYDQVKSVCKKYKVYFSTPRDVKPNQDYLVDHSIFFY 250 Query: 356 LMNPKMEFVKFFGKNYDEDTLAEGIIKEIREH 261 L++P+ +F+ G+NYDE + E I ++I+ + Sbjct: 251 LIDPEGQFIDALGRNYDEQSGLEKIREQIQAY 282
>SCO1_SCHPO (O42899) Protein sco1| Length = 263 Score = 139 bits (349), Expect = 1e-32 Identities = 60/149 (40%), Positives = 97/149 (65%), Gaps = 3/149 (2%) Frame = -3 Query: 719 LNHDGKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXIVPVFISV 540 ++H G VT+ DF GK++L+YFGFT CPDICPDEL KM + P+FI+ Sbjct: 104 IDHHGNRVTDNDFKGKFSLIYFGFTRCPDICPDELDKMSAAIDIVNNVVGDVVYPIFITC 163 Query: 539 DPERDTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYY---MKTEEEGSDYLVDHS 369 DP RD +++ +Y+++F+ ++GLTG+ +E++ + + +RVY+ + + DYLVDHS Sbjct: 164 DPARDPPQEMAEYLEDFNPKIVGLTGSYEEIKDICKKFRVYFSTPKNIDPKKDDYLVDHS 223 Query: 368 IVMYLMNPKMEFVKFFGKNYDEDTLAEGI 282 + YLM+P+ +F++ FG+N + LA I Sbjct: 224 VFFYLMDPEGKFIEVFGRNSTSEDLARAI 252
>SCO22_RICPR (Q9ZCW7) SCO2-like protein RP587| Length = 205 Score = 100 bits (248), Expect = 6e-21 Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 2/135 (1%) Frame = -3 Query: 719 LNHDGKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXIVPVFISV 540 ++ +G+ G +L+YFGFT CPDICP L K+ +PVFI+V Sbjct: 56 IDQNGEIFNSDKLRGHLSLIYFGFTSCPDICPTSLNKITNIVEILHQNKIDI-IPVFITV 114 Query: 539 DPERDTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYMKTEEEGSD--YLVDHSI 366 DP+RDT E + +Y+K FH I LTG +++ V ++V+Y + + D Y++DHS Sbjct: 115 DPKRDTPEVLKEYIKNFHPKFISLTGNEHQIKDVTDKFKVFYARVNSDNDDQNYMIDHSS 174 Query: 365 VMYLMNPKMEFVKFF 321 YL++ ++K F Sbjct: 175 FTYLIDKNGRYMKHF 189
>SCO22_RICCN (Q92H76) SCO2-like protein RC0895| Length = 205 Score = 98.6 bits (244), Expect = 2e-20 Identities = 46/135 (34%), Positives = 77/135 (57%), Gaps = 2/135 (1%) Frame = -3 Query: 719 LNHDGKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXIVPVFISV 540 ++ +G+ G +L+YFGFT CPDICP L KM +PVFI++ Sbjct: 56 IDQNGEIFNSDKLKGNLSLIYFGFTSCPDICPTSLNKMTEIVEILNKHKIDI-LPVFITI 114 Query: 539 DPERDTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYMKT--EEEGSDYLVDHSI 366 DP+RDT + +Y+K FH IGLTG +++ V ++V+Y + +++ +Y++DHS Sbjct: 115 DPKRDTPIALKEYLKHFHPKFIGLTGNEQQIKDVTDKFKVFYARVHGDDDDPNYMLDHSS 174 Query: 365 VMYLMNPKMEFVKFF 321 YL++ +++K F Sbjct: 175 FTYLIDANGKYLKHF 189
>SENC_RHOCA (Q52720) Protein senC| Length = 219 Score = 90.9 bits (224), Expect = 4e-18 Identities = 47/146 (32%), Positives = 79/146 (54%) Frame = -3 Query: 719 LNHDGKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXIVPVFISV 540 ++ G VT++D + K +L+YFG+++CPD+CP + + + PVFISV Sbjct: 57 ISETGATVTDRDVITKPSLVYFGYSYCPDVCPIDSTR-NAAAVDLLAERGHDVTPVFISV 115 Query: 539 DPERDTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYMKTEEEGSDYLVDHSIVM 360 D RDT + ++ +IGLTGT +++ +AYR YY+ LVDHS Sbjct: 116 DAARDTPPVLTEFTDLMSPKMIGLTGTPEQIDAAVKAYRAYYLIRNPGDPATLVDHSTQT 175 Query: 359 YLMNPKMEFVKFFGKNYDEDTLAEGI 282 YLM K+ F+ F+ ++ + +A+ + Sbjct: 176 YLM--KLGFLDFYDRDATPEMVADSV 199
>SCOP_PSEST (P47206) Putative copper-binding protein| Length = 204 Score = 80.5 bits (197), Expect = 5e-15 Identities = 38/111 (34%), Positives = 61/111 (54%) Frame = -3 Query: 677 GKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXIVPVFISVDPERDTVEQVHDYV 498 G+W +L+FGFT CPDICP L +M + V I+ DP RDT +Q+ Y+ Sbjct: 65 GRWHILFFGFTACPDICPTTLSEMRRLFGQLPAETREQLQLVLITADPARDTPQQLKTYL 124 Query: 497 KEFHQDLIGLTGTSDEVRKVARAYRVYYMKTEEEGSDYLVDHSIVMYLMNP 345 + IGLTG ++++++++A + ++ E DY V HS + L+ P Sbjct: 125 SYYRAGFIGLTGNMEQLQRLSKALGLPFVPATETEGDYSVSHSGNLALVGP 175
>SCO21_RICPR (Q9ZEB4) SCO2-like protein RP031| Length = 191 Score = 56.6 bits (135), Expect = 7e-08 Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 2/126 (1%) Frame = -3 Query: 719 LNHDGKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXIVPVFISV 540 + GK + G +L+YFG T+ + ++ K + VFI++ Sbjct: 55 IEQQGKKFDSTNLQGYLSLIYFGTTY--SLYDNQALKRVEDIIKILKRENILLQVVFITL 112 Query: 539 DPERDTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYMKT--EEEGSDYLVDHSI 366 DPE DT E + Y+++ + IGLTG ++ ++A+ ++V+Y + + ++Y + HS Sbjct: 113 DPEHDTSEVLKKYLEKIDSNFIGLTGRVQDIEQLAQQFKVFYTSKIFDVKTNEYALQHSN 172 Query: 365 VMYLMN 348 +YL++ Sbjct: 173 FVYLIS 178
>SCO21_RICCN (Q92JM5) SCO2-like protein RC0042| Length = 199 Score = 55.1 bits (131), Expect = 2e-07 Identities = 32/136 (23%), Positives = 70/136 (51%), Gaps = 3/136 (2%) Frame = -3 Query: 719 LNHDGKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXIVPVFISV 540 ++ +GK G +L+YFG T+ + ++ K + VFI++ Sbjct: 58 IDQEGKKFDSTHLQGHLSLIYFGTTY--SLYDNQTLKRVEDIIKILKKENILVQVVFITL 115 Query: 539 DPERDTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYMKT---EEEGSDYLVDHS 369 D E DT E + Y+++ + IGLTG +++ ++A ++V++ + + + + Y + HS Sbjct: 116 DSEHDTSEVLKKYLEKIDDNFIGLTGRVEDIEQLADQFKVFFYTSKIFDVKTNKYELQHS 175 Query: 368 IVMYLMNPKMEFVKFF 321 +YL++ + +F+K + Sbjct: 176 NFVYLISSQGKFLKHY 191
>YPMQ_BACSU (P54178) Hypothetical protein ypmQ| Length = 193 Score = 44.7 bits (104), Expect = 3e-04 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 5/155 (3%) Frame = -3 Query: 716 NHDGKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXIVPVFISVD 537 N DGK V+ + G+ L F FT+C ICP M + + SVD Sbjct: 39 NQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAGNIDVRI-ISFSVD 97 Query: 536 PERDTVEQVHDYVKEFHQDLIG---LTGTS-DEVRKVA-RAYRVYYMKTEEEGSDYLVDH 372 PE D +Q+ + + LTG S E+ + A ++++ K EG D ++ H Sbjct: 98 PENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKK--PEGEDQVI-H 154 Query: 371 SIVMYLMNPKMEFVKFFGKNYDEDTLAEGIIKEIR 267 YL+ P + +K + N E+T + II +++ Sbjct: 155 QSSFYLVGPDGKVLKDY--NGVENTPYDDIISDVK 187
>PYRC_SULAC (O08357) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 389 Score = 33.9 bits (76), Expect = 0.52 Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 12/99 (12%) Frame = -3 Query: 536 PERDTVEQVHDYVKEFH----QDLIGLTGTSDEVRKVAR----AYRVYYMKTEEEGSDYL 381 P +T E++ + ++EF D +G S EV ++ + Y++Y E+E + Y+ Sbjct: 88 PYINTPERIKERLREFQLYSRTDYGIYSGVSKEVEEIDKLPIAGYKIYPEDLEKEETRYV 147 Query: 380 VDHSIVMYLMNPKMEFV----KFFGKNYDEDTLAEGIIK 276 ++ S + +++P+M FV + ++Y +T A ++K Sbjct: 148 LEKSKKLKILHPEMPFVSKIERSLRRSYWMETAAINLVK 186
>TDX1_BRUMA (P48822) Thioredoxin peroxidase 1 (EC 1.11.1.15) (Peroxiredoxin 1)| (Thioredoxin-dependent peroxide reductase 1) (Thiol-specific antioxidant protein 1) (Bm-TPx-1) Length = 229 Score = 32.7 bits (73), Expect = 1.2 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -3 Query: 719 LNHDGKAVTEKDFLGKWTLLYFGFTHCPDICPDEL 615 +N D K ++ KD+ GKW +L+F +CP E+ Sbjct: 48 VNGDFKTISMKDYKGKWLILFFYPLDFTFVCPTEI 82
>DAD2_ASHGO (Q759Q6) DASH complex subunit DAD2 (Outer kinetochore protein DAD2)| Length = 111 Score = 30.8 bits (68), Expect = 4.4 Identities = 23/56 (41%), Positives = 32/56 (57%) Frame = +3 Query: 315 LAEELDELHFRVHQVHDN*MINKVVRTLLLCLHIVDSISTSNLSHLIRGTS*SYEI 482 L +LDEL +VHQ+HDN V L I++SIS + LS L++ T YE+ Sbjct: 27 LKAQLDELSKQVHQMHDN--AECVSSVLKNWDSILNSISQATLS-LLQYTENDYEV 79
>CAD26_MOUSE (P59862) Cadherin-like protein 26 precursor| Length = 763 Score = 30.4 bits (67), Expect = 5.7 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 Query: 111 LFFWALMPVRSGRFLLDARLMCRLXCLSAF 22 L +WAL PV + +L A L+C L C F Sbjct: 591 LLWWALSPVGAALMVLSAALLCLLRCSCTF 620
>MURC_STRR6 (Q8DP40) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 444 Score = 30.0 bits (66), Expect = 7.5 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = -3 Query: 527 DTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYMKTEEEGSDYL 381 D +DY K+ + L + G E+RK+ +YY E EG+D++ Sbjct: 186 DVFNAFNDYAKQITKGLF-VYGEDAELRKITSDAPIYYYGFEAEGNDFV 233
>MURC_STRPN (Q97PS8) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 444 Score = 30.0 bits (66), Expect = 7.5 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = -3 Query: 527 DTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYMKTEEEGSDYL 381 D +DY K+ + L + G E+RK+ +YY E EG+D++ Sbjct: 186 DVFNAFNDYAKQITKGLF-VYGEDAELRKITSDAPIYYYGFEAEGNDFV 233
>SPL15_ARATH (Q9M2Q6) Squamosa promoter-binding-like protein 15| Length = 354 Score = 29.6 bits (65), Expect = 9.7 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +2 Query: 338 PFSGSSST*QLNDQQGSQNPPPLSSYSRLDKHEQPFSPHQRY 463 P SG S +D+ PPP+S+ H+ P S HQ+Y Sbjct: 246 PSSGFDSMISFSDKVTMAQPPPIST------HQPPISTHQQY 281
>AHPC_STAES (Q8CMQ2) Alkyl hydroperoxide reductase subunit C (EC 1.11.1.15)| (Peroxiredoxin) (Thioredoxin peroxidase) Length = 189 Score = 29.6 bits (65), Expect = 9.7 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -3 Query: 704 KAVTEKDFLGKWTLLYFGFTHCPDICPDELQKM 606 K VT++DF G W ++ F +CP EL+ + Sbjct: 24 KEVTQEDFKGSWNVVCFYPADFSFVCPTELEDL 56
>AHPC_STAEQ (Q5HRY1) Alkyl hydroperoxide reductase subunit C (EC 1.11.1.15)| (Peroxiredoxin) (Thioredoxin peroxidase) Length = 189 Score = 29.6 bits (65), Expect = 9.7 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -3 Query: 704 KAVTEKDFLGKWTLLYFGFTHCPDICPDELQKM 606 K VT++DF G W ++ F +CP EL+ + Sbjct: 24 KEVTQEDFKGSWNVVCFYPADFSFVCPTELEDL 56
>TDX1_CAEEL (Q21824) Probable peroxiredoxin (EC 1.11.1.15) (Thioredoxin| peroxidase) (Thioredoxin-dependent peroxide reductase) (Thiol-specific antioxidant protein) Length = 226 Score = 29.6 bits (65), Expect = 9.7 Identities = 10/32 (31%), Positives = 20/32 (62%) Frame = -3 Query: 710 DGKAVTEKDFLGKWTLLYFGFTHCPDICPDEL 615 D K ++++D+ GKW +++F +CP E+ Sbjct: 51 DFKVISDQDYKGKWLVMFFYPLDFTFVCPTEI 82 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,384,799 Number of Sequences: 219361 Number of extensions: 1839877 Number of successful extensions: 5323 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5151 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5307 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7366267610 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
