ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18m17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.64
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.64
3dbj|AK072935.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.64
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.64
5emb|BX001058.4| Zebrafish DNA sequence from clone CH211-14I21, c... 44 0.64
6gb|AC137588.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.5
7emb|Z84574.1|CEF33E2 Caenorhabditis elegans Cosmid F33E2, comple... 42 2.5
8ref|XM_949962.1| Theileria annulata strain Ankara hypothetical p... 42 2.5
9gb|AC026224.6| Homo sapiens chromosome 10 clone RP11-74N14, comp... 42 2.5
10dbj|AK106960.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.5

>gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0093J03, complete sequence
          Length = 200626

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 543    caaacttgcagcagaccgccccatggagcctgaa 576
              |||||||||| |||| | ||||||||||||||||
Sbjct: 184496 caaacttgcaacagatcaccccatggagcctgaa 184529



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 543      caaacttgcagcagaccgccccatggagcctgaa 576
                |||||||||| |||| | ||||||||||||||||
Sbjct: 20877435 caaacttgcaacagatcaccccatggagcctgaa 20877468



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 201      ggtgttatccatatgggactcggccagct 229
                ||||||||||||| |||||| ||||||||
Sbjct: 21216006 ggtgttatccatacgggactaggccagct 21215978



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>dbj|AK072935.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148D10, full
            insert sequence
          Length = 1992

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 543  caaacttgcagcagaccgccccatggagcctgaa 576
            |||||||||| |||| | ||||||||||||||||
Sbjct: 1399 caaacttgcaacagatcaccccatggagcctgaa 1366



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 543      caaacttgcagcagaccgccccatggagcctgaa 576
                |||||||||| |||| | ||||||||||||||||
Sbjct: 21187670 caaacttgcaacagatcaccccatggagcctgaa 21187703



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 201      ggtgttatccatatgggactcggccagct 229
                ||||||||||||| |||||| ||||||||
Sbjct: 21526247 ggtgttatccatacgggactaggccagct 21526219



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>emb|BX001058.4| Zebrafish DNA sequence from clone CH211-14I21, complete sequence
          Length = 209611

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 133    ataatcaaagtacataattaaaaaat 158
              ||||| ||||||||||||||||||||
Sbjct: 179092 ataataaaagtacataattaaaaaat 179067



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>gb|AC137588.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0060K21, complete sequence
          Length = 153973

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 201   ggtgttatccatatgggactcggccagct 229
             ||||||||||||| |||||| ||||||||
Sbjct: 98165 ggtgttatccatacgggactaggccagct 98137



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>emb|Z84574.1|CEF33E2 Caenorhabditis elegans Cosmid F33E2, complete sequence
          Length = 26154

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 479  caagattttattagtttcaac 499
            |||||||||||||||||||||
Sbjct: 6191 caagattttattagtttcaac 6171



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>ref|XM_949962.1| Theileria annulata strain Ankara hypothetical protein (TA04170)
           partial mRNA
          Length = 3042

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 571 cctgaagaaggtagaataccc 591
           |||||||||||||||||||||
Sbjct: 742 cctgaagaaggtagaataccc 762



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>gb|AC026224.6| Homo sapiens chromosome 10 clone RP11-74N14, complete sequence
          Length = 167768

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 124   acagaccccataatcaaagta 144
             |||||||||||||||||||||
Sbjct: 38366 acagaccccataatcaaagta 38386



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>dbj|AK106960.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-F02, full
            insert sequence
          Length = 2098

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 201  ggtgttatccatatgggactcggccagct 229
            ||||||||||||| |||||| ||||||||
Sbjct: 1829 ggtgttatccatacgggactaggccagct 1801


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,228,615
Number of Sequences: 3902068
Number of extensions: 7228615
Number of successful extensions: 124761
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124603
Number of HSP's gapped (non-prelim): 158
length of query: 732
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 709
effective length of database: 17,143,297,704
effective search space: 12154598072136
effective search space used: 12154598072136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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