Clone Name | rbasd18m17 |
---|---|
Clone Library Name | barley_pub |
>gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0093J03, complete sequence Length = 200626 Score = 44.1 bits (22), Expect = 0.64 Identities = 31/34 (91%) Strand = Plus / Plus Query: 543 caaacttgcagcagaccgccccatggagcctgaa 576 |||||||||| |||| | |||||||||||||||| Sbjct: 184496 caaacttgcaacagatcaccccatggagcctgaa 184529
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.64 Identities = 31/34 (91%) Strand = Plus / Plus Query: 543 caaacttgcagcagaccgccccatggagcctgaa 576 |||||||||| |||| | |||||||||||||||| Sbjct: 20877435 caaacttgcaacagatcaccccatggagcctgaa 20877468 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 201 ggtgttatccatatgggactcggccagct 229 ||||||||||||| |||||| |||||||| Sbjct: 21216006 ggtgttatccatacgggactaggccagct 21215978
>dbj|AK072935.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148D10, full insert sequence Length = 1992 Score = 44.1 bits (22), Expect = 0.64 Identities = 31/34 (91%) Strand = Plus / Minus Query: 543 caaacttgcagcagaccgccccatggagcctgaa 576 |||||||||| |||| | |||||||||||||||| Sbjct: 1399 caaacttgcaacagatcaccccatggagcctgaa 1366
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.64 Identities = 31/34 (91%) Strand = Plus / Plus Query: 543 caaacttgcagcagaccgccccatggagcctgaa 576 |||||||||| |||| | |||||||||||||||| Sbjct: 21187670 caaacttgcaacagatcaccccatggagcctgaa 21187703 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 201 ggtgttatccatatgggactcggccagct 229 ||||||||||||| |||||| |||||||| Sbjct: 21526247 ggtgttatccatacgggactaggccagct 21526219
>emb|BX001058.4| Zebrafish DNA sequence from clone CH211-14I21, complete sequence Length = 209611 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Minus Query: 133 ataatcaaagtacataattaaaaaat 158 ||||| |||||||||||||||||||| Sbjct: 179092 ataataaaagtacataattaaaaaat 179067
>gb|AC137588.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0060K21, complete sequence Length = 153973 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 201 ggtgttatccatatgggactcggccagct 229 ||||||||||||| |||||| |||||||| Sbjct: 98165 ggtgttatccatacgggactaggccagct 98137
>emb|Z84574.1|CEF33E2 Caenorhabditis elegans Cosmid F33E2, complete sequence Length = 26154 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 479 caagattttattagtttcaac 499 ||||||||||||||||||||| Sbjct: 6191 caagattttattagtttcaac 6171
>ref|XM_949962.1| Theileria annulata strain Ankara hypothetical protein (TA04170) partial mRNA Length = 3042 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 571 cctgaagaaggtagaataccc 591 ||||||||||||||||||||| Sbjct: 742 cctgaagaaggtagaataccc 762
>gb|AC026224.6| Homo sapiens chromosome 10 clone RP11-74N14, complete sequence Length = 167768 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 124 acagaccccataatcaaagta 144 ||||||||||||||||||||| Sbjct: 38366 acagaccccataatcaaagta 38386
>dbj|AK106960.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-F02, full insert sequence Length = 2098 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 201 ggtgttatccatatgggactcggccagct 229 ||||||||||||| |||||| |||||||| Sbjct: 1829 ggtgttatccatacgggactaggccagct 1801 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,228,615 Number of Sequences: 3902068 Number of extensions: 7228615 Number of successful extensions: 124761 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 124603 Number of HSP's gapped (non-prelim): 158 length of query: 732 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 709 effective length of database: 17,143,297,704 effective search space: 12154598072136 effective search space used: 12154598072136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)