ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18m15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473241.1| Oryza sativa (japonica cultivar-group), predic... 76 1e-10
2emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4,... 76 1e-10
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
5dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
6dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
7dbj|AK109408.2| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
8gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 50 0.007
9gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 48 0.028
10gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 48 0.028
11emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 48 0.028
12gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 48 0.028
13ref|XM_493948.1| Oryza sativa (japonica cultivar-group), Ozsa801... 46 0.11
14gb|AC153977.4| Mus musculus 10 BAC RP24-270K22 (Roswell Park Can... 46 0.11
15dbj|AP002071.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
16emb|AL627310.5| Human DNA sequence from clone RP11-199P24 on chr... 42 1.7
17gb|CP000264.1| Jannaschia sp. CCS1, complete genome 42 1.7
18ref|XM_493953.1| Oryza sativa (japonica cultivar-group), Ozsa801... 40 6.9
19ref|XM_472753.1| Oryza sativa (japonica cultivar-group), predic... 40 6.9
20gb|AE014834.1| Plasmodium falciparum 3D7 chromosome 10 section 6... 40 6.9
21gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 6.9
22ref|XM_654940.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 6.9
23ref|XM_846007.1| PREDICTED: Canis familiaris similar to MAM doma... 40 6.9
24gb|AC127019.29| Medicago truncatula clone mth2-31b1, complete se... 40 6.9
25gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 6.9
26gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 6.9
27emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.9
28emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4,... 40 6.9
29emb|BX901979.16| Zebrafish DNA sequence from clone DKEY-74C10 in... 40 6.9
30gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 6.9
31gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone mth2-1... 40 6.9
32gb|AF112367.1|AF112367 Plasmodium falciparum S-adenosylmethionin... 40 6.9
33dbj|AK104626.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.9
34dbj|AK071020.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.9
35dbj|AK061745.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.9
36gb|AY110668.1| Zea mays CL8874_1 mRNA sequence 40 6.9
37gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 6.9
38dbj|AB028181.1| Oryza sativa mRNA for OsNAC2 protein, complete cds 40 6.9 
>ref|XM_473241.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1041

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/90 (85%)
 Strand = Plus / Plus

                                                                       
Query: 416 gctctaccgccacgagaacggctggtacagcaccctgcctccgctggtcggcgccatggt 475
           ||||||||||||||| || ||||||||||| | |||    ||  ||||||| || |||||
Sbjct: 135 gctctaccgccacgacaaaggctggtacagtagcctcatgcctatggtcggtgcgatggt 194

                                         
Query: 476 cgccgacgcgcgcttcgccgcgcgcccctc 505
           |||||||||||| |||||||||||||||||
Sbjct: 195 cgccgacgcgcggttcgccgcgcgcccctc 224



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                       
Query: 326 cgacgccgaaaccaacgaagagctctaccggcagttcaccgaactggcgtcctcctggcc 385
           ||||||||||||  |||| || ||||||  ||||||||||||   || ||||||||||||
Sbjct: 48  cgacgccgaaactgacgaggaactctacaagcagttcaccgactcggtgtcctcctggcc 107

                 
Query: 386 gtgctc 391
           | ||||
Sbjct: 108 gagctc 113
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>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10,
             complete sequence
          Length = 141545

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/90 (85%)
 Strand = Plus / Plus

                                                                         
Query: 416   gctctaccgccacgagaacggctggtacagcaccctgcctccgctggtcggcgccatggt 475
             ||||||||||||||| || ||||||||||| | |||    ||  ||||||| || |||||
Sbjct: 70602 gctctaccgccacgacaaaggctggtacagtagcctcatgcctatggtcggtgcgatggt 70661

                                           
Query: 476   cgccgacgcgcgcttcgccgcgcgcccctc 505
             |||||||||||| |||||||||||||||||
Sbjct: 70662 cgccgacgcgcggttcgccgcgcgcccctc 70691



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                         
Query: 326   cgacgccgaaaccaacgaagagctctaccggcagttcaccgaactggcgtcctcctggcc 385
             ||||||||||||  |||| || ||||||  ||||||||||||   || ||||||||||||
Sbjct: 70515 cgacgccgaaactgacgaggaactctacaagcagttcaccgactcggtgtcctcctggcc 70574

                   
Query: 386   gtgctc 391
             | ||||
Sbjct: 70575 gagctc 70580
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/90 (85%)
 Strand = Plus / Plus

                                                                            
Query: 416      gctctaccgccacgagaacggctggtacagcaccctgcctccgctggtcggcgccatggt 475
                ||||||||||||||| || ||||||||||| | |||    ||  ||||||| || |||||
Sbjct: 26294025 gctctaccgccacgacaaaggctggtacagtagcctcatgcctatggtcggtgcgatggt 26294084

                                              
Query: 476      cgccgacgcgcgcttcgccgcgcgcccctc 505
                |||||||||||| |||||||||||||||||
Sbjct: 26294085 cgccgacgcgcggttcgccgcgcgcccctc 26294114



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                            
Query: 326      cgacgccgaaaccaacgaagagctctaccggcagttcaccgaactggcgtcctcctggcc 385
                ||||||||||||  |||| || ||||||  ||||||||||||   || ||||||||||||
Sbjct: 26293938 cgacgccgaaactgacgaggaactctacaagcagttcaccgactcggtgtcctcctggcc 26293997

                      
Query: 386      gtgctc 391
                | ||||
Sbjct: 26293998 gagctc 26294003



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 473      ggtcgccgacgcgcgcttcgccgc 496
                |||||||||||| |||||||||||
Sbjct: 22969808 ggtcgccgacgcccgcttcgccgc 22969831
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 471      atggtcgccgacgcgcgcttcgccgcgcgcccctcgga 508
                ||||||||||||| || |||||||||||||||||||||
Sbjct: 24909430 atggtcgccgacgagctcttcgccgcgcgcccctcgga 24909393



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 466     gcgccatggtcgccgacgcgcgcttcg 492
               ||||||||||||||||| |||||||||
Sbjct: 3570745 gcgccatggtcgccgacccgcgcttcg 3570771



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 466     gcgccatggtcgccgacgcgcgcttcgc 493
               ||||||||||||||||| || |||||||
Sbjct: 3582244 gcgccatggtcgccgacccgtgcttcgc 3582217
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>dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0530H05
          Length = 145952

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 471  atggtcgccgacgcgcgcttcgccgcgcgcccctcgga 508
            ||||||||||||| || |||||||||||||||||||||
Sbjct: 3985 atggtcgccgacgagctcttcgccgcgcgcccctcgga 3948
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>dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0072A21
          Length = 158287

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                    
Query: 471    atggtcgccgacgcgcgcttcgccgcgcgcccctcgga 508
              ||||||||||||| || |||||||||||||||||||||
Sbjct: 120513 atggtcgccgacgagctcttcgccgcgcgcccctcgga 120476
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>dbj|AK109408.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-D04, full
           insert sequence
          Length = 1274

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 471 atggtcgccgacgcgcgcttcgccgcgcgcccctcgga 508
           ||||||||||||| || |||||||||||||||||||||
Sbjct: 252 atggtcgccgacgagctcttcgccgcgcgcccctcgga 289
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                            
Query: 474     gtcgccgacgcgcgcttcgccgcgcgccc 502
               ||||||||||| |||||||||||||||||
Sbjct: 3542317 gtcgccgacgctcgcttcgccgcgcgccc 3542289



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 456    ccgctggtcggcgccatggtcgccg 480
              |||||||||||||||||| ||||||
Sbjct: 846067 ccgctggtcggcgccatgctcgccg 846043
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 478     ccgacgcgcgcttcgccgcgcgcc 501
               ||||||||||||||||||||||||
Sbjct: 1624801 ccgacgcgcgcttcgccgcgcgcc 1624778



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 476    cgccgacgcgcgcttcgccgcgcgcc 501
              ||||||||||| ||||||||||||||
Sbjct: 780854 cgccgacgcgcccttcgccgcgcgcc 780879
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 478     ccgacgcgcgcttcgccgcgcgcc 501
               ||||||||||||||||||||||||
Sbjct: 2871511 ccgacgcgcgcttcgccgcgcgcc 2871488



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 476     cgccgacgcgcgcttcgccgcgcgcc 501
               ||||||||||| ||||||||||||||
Sbjct: 1300958 cgccgacgcgcccttcgccgcgcgcc 1300983
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 478     ccgacgcgcgcttcgccgcgcgcc 501
               ||||||||||||||||||||||||
Sbjct: 2601672 ccgacgcgcgcttcgccgcgcgcc 2601649



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 476     cgccgacgcgcgcttcgccgcgcgcc 501
               ||||||||||| ||||||||||||||
Sbjct: 1205064 cgccgacgcgcccttcgccgcgcgcc 1205089
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 478     ccgacgcgcgcttcgccgcgcgcc 501
               ||||||||||||||||||||||||
Sbjct: 2287419 ccgacgcgcgcttcgccgcgcgcc 2287442



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 476     cgccgacgcgcgcttcgccgcgcgcc 501
               ||||||||||| ||||||||||||||
Sbjct: 1018155 cgccgacgcgcccttcgccgcgcgcc 1018180
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>ref|XM_493948.1| Oryza sativa (japonica cultivar-group), Ozsa8013 predicted mRNA
          Length = 990

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 466 gcgccatggtcgccgacgcgcgcttcg 492
           ||||||||||||||||| |||||||||
Sbjct: 488 gcgccatggtcgccgacccgcgcttcg 514
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>gb|AC153977.4| Mus musculus 10 BAC RP24-270K22 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 163035

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 126   acacaaaagatttatatttatag 148
             |||||||||||||||||||||||
Sbjct: 65722 acacaaaagatttatatttatag 65744
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>dbj|AP002071.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0675A05
          Length = 131972

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 466   gcgccatggtcgccgacgcgcgcttcg 492
             ||||||||||||||||| |||||||||
Sbjct: 62582 gcgccatggtcgccgacccgcgcttcg 62608



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 466   gcgccatggtcgccgacgcgcgcttcgc 493
             ||||||||||||||||| || |||||||
Sbjct: 74081 gcgccatggtcgccgacccgtgcttcgc 74054
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>emb|AL627310.5| Human DNA sequence from clone RP11-199P24 on chromosome 1, complete
             sequence
          Length = 139407

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 129   caaaagatttatatttatagaataa 153
             ||||||| |||||||||||||||||
Sbjct: 55406 caaaagaattatatttatagaataa 55430
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 474    gtcgccgacgcgcgcttcgcc 494
              |||||||||||||||||||||
Sbjct: 162623 gtcgccgacgcgcgcttcgcc 162603



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 475   tcgccgacgcgcgcttcgcc 494
             ||||||||||||||||||||
Sbjct: 83096 tcgccgacgcgcgcttcgcc 83077
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>ref|XM_493953.1| Oryza sativa (japonica cultivar-group), Ozsa8018 predicted mRNA
          Length = 1257

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 466 gcgccatggtcgccgacgcgcgcttcgc 493
           ||||||||||||||||| || |||||||
Sbjct: 158 gcgccatggtcgccgacccgtgcttcgc 185
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>ref|XM_472753.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1032

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 473 ggtcgccgacgcgcgcttcgccgc 496
           |||||||||||| |||||||||||
Sbjct: 99  ggtcgccgacgcccgcttcgccgc 122
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>gb|AE014834.1| Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete
             sequence
          Length = 253001

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 131   aaagatttatatttatagaataat 154
             |||||||||||||||||| |||||
Sbjct: 69624 aaagatttatatttataggataat 69647
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 479     cgacgcgcgcttcgccgcgcgccc 502
               ||||||||||||||||| ||||||
Sbjct: 2554863 cgacgcgcgcttcgccgtgcgccc 2554840



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 477    gccgacgcgcgcttcgccgcgcgc 500
              |||||||||||| |||||||||||
Sbjct: 563094 gccgacgcgcgcatcgccgcgcgc 563071



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 479    cgacgcgcgcttcgccgcgcgccc 502
              ||||||||||||||||| ||||||
Sbjct: 523783 cgacgcgcgcttcgccgtgcgccc 523806
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>ref|XM_654940.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2428.2), mRNA
          Length = 4191

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 278  ctgccgtaaaatgtcctcctccat 301
            |||||||||||| |||||||||||
Sbjct: 2166 ctgccgtaaaatctcctcctccat 2143
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>ref|XM_846007.1| PREDICTED: Canis familiaris similar to MAM domain containing 2
           (LOC608871), mRNA
          Length = 2061

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 371 ggcgtcctcctggccgtgct 390
           ||||||||||||||||||||
Sbjct: 13  ggcgtcctcctggccgtgct 32
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>gb|AC127019.29| Medicago truncatula clone mth2-31b1, complete sequence
          Length = 122810

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    aacacaaaagatttatattt 144
              ||||||||||||||||||||
Sbjct: 110590 aacacaaaagatttatattt 110571
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 457     cgctggtcggcgccatggtc 476
               ||||||||||||||||||||
Sbjct: 1876350 cgctggtcggcgccatggtc 1876369
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 459     ctggtcggcgccatggtcgc 478
               ||||||||||||||||||||
Sbjct: 1055006 ctggtcggcgccatggtcgc 1054987
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 477     gccgacgcgcgcttcgccgcgcgc 500
               |||||||||||| |||||||||||
Sbjct: 1882421 gccgacgcgcgcatcgccgcgcgc 1882398



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 479     cgacgcgcgcttcgccgcgcgccc 502
               ||||||||||||||||| ||||||
Sbjct: 1843049 cgacgcgcgcttcgccgtgcgccc 1843072



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 479    cgacgcgcgcttcgccgcgcgccc 502
              ||||||||||||||||| ||||||
Sbjct: 734908 cgacgcgcgcttcgccgtgcgccc 734885
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>emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16,
             complete sequence
          Length = 176383

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 473   ggtcgccgacgcgcgcttcgccgc 496
             |||||||||||| |||||||||||
Sbjct: 64264 ggtcgccgacgcccgcttcgccgc 64287
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>emb|BX901979.16| Zebrafish DNA sequence from clone DKEY-74C10 in linkage group 13,
            complete sequence
          Length = 115885

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 126  acacaaaagatttatattta 145
            ||||||||||||||||||||
Sbjct: 3360 acacaaaagatttatattta 3379
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 479    cgacgcgcgcttcgccgcgcgccc 502
              ||||||||||||||||| ||||||
Sbjct: 940859 cgacgcgcgcttcgccgtgcgccc 940836



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 479    cgacgcgcgcttcgccgcgcgccc 502
              ||||||||||||||||| ||||||
Sbjct: 465802 cgacgcgcgcttcgccgtgcgccc 465779
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>gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone mth2-138b18, complete sequence
          Length = 128810

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    cacaaaagatttatatttat 146
              ||||||||||||||||||||
Sbjct: 115670 cacaaaagatttatatttat 115689
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>gb|AF112367.1|AF112367 Plasmodium falciparum S-adenosylmethionine decarboxylase-ornithine
            decarboxylase gene, complete cds
          Length = 7622

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 131  aaagatttatatttatagaataat 154
            |||||||||||||||||| |||||
Sbjct: 1191 aaagatttatatttataggataat 1168
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>dbj|AK104626.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-B03, full
           insert sequence
          Length = 1401

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 473 ggtcgccgacgcgcgcttcgccgc 496
           |||||||||||| |||||||||||
Sbjct: 203 ggtcgccgacgcccgcttcgccgc 226
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>dbj|AK071020.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080H09, full
           insert sequence
          Length = 1548

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 473 ggtcgccgacgcgcgcttcgccgc 496
           |||||||||||| |||||||||||
Sbjct: 206 ggtcgccgacgcccgcttcgccgc 229
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>dbj|AK061745.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-F10, full
           insert sequence
          Length = 1401

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 473 ggtcgccgacgcgcgcttcgccgc 496
           |||||||||||| |||||||||||
Sbjct: 203 ggtcgccgacgcccgcttcgccgc 226
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>gb|AY110668.1| Zea mays CL8874_1 mRNA sequence
          Length = 1522

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 373  cgtcctcctggccgtgctcc 392
            ||||||||||||||||||||
Sbjct: 1288 cgtcctcctggccgtgctcc 1307
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 479    cgacgcgcgcttcgccgcgc 498
              ||||||||||||||||||||
Sbjct: 288791 cgacgcgcgcttcgccgcgc 288772
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>dbj|AB028181.1| Oryza sativa mRNA for OsNAC2 protein, complete cds
          Length = 1377

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 473 ggtcgccgacgcgcgcttcgccgc 496
           |||||||||||| |||||||||||
Sbjct: 198 ggtcgccgacgcccgcttcgccgc 221


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,447,245
Number of Sequences: 3902068
Number of extensions: 3447245
Number of successful extensions: 66549
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65241
Number of HSP's gapped (non-prelim): 1308
length of query: 508
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 486
effective length of database: 17,147,199,772
effective search space: 8333539089192
effective search space used: 8333539089192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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