ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19b14 |
|---|---|
| Clone Library Name | barley_pub |
>RS3_ICTPU (Q90YS2) 40S ribosomal protein S3| Length = 245 Score = 98.2 bits (243), Expect(2) = 2e-32 Identities = 47/62 (75%), Positives = 50/62 (80%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 G MI SG PVN Y+D AVRHVLLRQGVLGIKVKIML WDP GK+GP PLPD V+I PK Sbjct: 155 GLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPK 214 Query: 274 EE 269 EE Sbjct: 215 EE 216 Score = 60.8 bits (146), Expect(2) = 2e-32 Identities = 28/32 (87%), Positives = 30/32 (93%) Frame = -1 Query: 545 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGL 450 F+MESGAKGCEV+VSGKLR QRAKSMKF DGL Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGL 156
>RS32_XENLA (P47835) 40S ribosomal protein S3-B (S1B)| Length = 246 Score = 97.1 bits (240), Expect(2) = 3e-32 Identities = 46/62 (74%), Positives = 50/62 (80%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 G MI SG PVN Y+D AVRHVLLRQGVLGIKVKIML WDP GK+GP PLPD V+I PK Sbjct: 155 GLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPK 214 Query: 274 EE 269 +E Sbjct: 215 DE 216 Score = 60.8 bits (146), Expect(2) = 3e-32 Identities = 28/32 (87%), Positives = 30/32 (93%) Frame = -1 Query: 545 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGL 450 F+MESGAKGCEV+VSGKLR QRAKSMKF DGL Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGL 156
>RS31_XENLA (P02350) 40S ribosomal protein S3-A (S1A)| Length = 246 Score = 97.1 bits (240), Expect(2) = 3e-32 Identities = 46/62 (74%), Positives = 50/62 (80%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 G MI SG PVN Y+D AVRHVLLRQGVLGIKVKIML WDP GK+GP PLPD V+I PK Sbjct: 155 GLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPK 214 Query: 274 EE 269 +E Sbjct: 215 DE 216 Score = 60.8 bits (146), Expect(2) = 3e-32 Identities = 28/32 (87%), Positives = 30/32 (93%) Frame = -1 Query: 545 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGL 450 F+MESGAKGCEV+VSGKLR QRAKSMKF DGL Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGL 156
>RS3_RAT (P62909) 40S ribosomal protein S3| Length = 243 Score = 97.1 bits (240), Expect(2) = 3e-32 Identities = 46/62 (74%), Positives = 50/62 (80%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 G MI SG PVN Y+D AVRHVLLRQGVLGIKVKIML WDP GK+GP PLPD V+I PK Sbjct: 155 GLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPK 214 Query: 274 EE 269 +E Sbjct: 215 DE 216 Score = 60.8 bits (146), Expect(2) = 3e-32 Identities = 28/32 (87%), Positives = 30/32 (93%) Frame = -1 Query: 545 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGL 450 F+MESGAKGCEV+VSGKLR QRAKSMKF DGL Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGL 156
>RS3_MOUSE (P62908) 40S ribosomal protein S3| Length = 243 Score = 97.1 bits (240), Expect(2) = 3e-32 Identities = 46/62 (74%), Positives = 50/62 (80%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 G MI SG PVN Y+D AVRHVLLRQGVLGIKVKIML WDP GK+GP PLPD V+I PK Sbjct: 155 GLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPK 214 Query: 274 EE 269 +E Sbjct: 215 DE 216 Score = 60.8 bits (146), Expect(2) = 3e-32 Identities = 28/32 (87%), Positives = 30/32 (93%) Frame = -1 Query: 545 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGL 450 F+MESGAKGCEV+VSGKLR QRAKSMKF DGL Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGL 156
>RS3_PONPY (Q5R465) 40S ribosomal protein S3| Length = 243 Score = 96.7 bits (239), Expect(2) = 5e-32 Identities = 46/62 (74%), Positives = 50/62 (80%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 G MI SG PVN Y+D AVRHVLLRQGVLGIKVKIML WDP GK+GP PLPD V+I PK Sbjct: 155 GLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPK 214 Query: 274 EE 269 +E Sbjct: 215 DE 216 Score = 60.8 bits (146), Expect(2) = 5e-32 Identities = 28/32 (87%), Positives = 30/32 (93%) Frame = -1 Query: 545 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGL 450 F+MESGAKGCEV+VSGKLR QRAKSMKF DGL Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGL 156
>RS3_HUMAN (P23396) 40S ribosomal protein S3| Length = 243 Score = 96.7 bits (239), Expect(2) = 5e-32 Identities = 46/62 (74%), Positives = 50/62 (80%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 G MI SG PVN Y+D AVRHVLLRQGVLGIKVKIML WDP GK+GP PLPD V+I PK Sbjct: 155 GLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPK 214 Query: 274 EE 269 +E Sbjct: 215 DE 216 Score = 60.8 bits (146), Expect(2) = 5e-32 Identities = 28/32 (87%), Positives = 30/32 (93%) Frame = -1 Query: 545 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGL 450 F+MESGAKGCEV+VSGKLR QRAKSMKF DGL Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGL 156
>RS3_BOVIN (Q3T169) 40S ribosomal protein S3| Length = 243 Score = 96.7 bits (239), Expect(2) = 5e-32 Identities = 46/62 (74%), Positives = 50/62 (80%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 G MI SG PVN Y+D AVRHVLLRQGVLGIKVKIML WDP GK+GP PLPD V+I PK Sbjct: 155 GLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPK 214 Query: 274 EE 269 +E Sbjct: 215 DE 216 Score = 60.8 bits (146), Expect(2) = 5e-32 Identities = 28/32 (87%), Positives = 30/32 (93%) Frame = -1 Query: 545 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGL 450 F+MESGAKGCEV+VSGKLR QRAKSMKF DGL Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGL 156
>RS3_AMBME (P79891) 40S ribosomal protein S3| Length = 253 Score = 96.7 bits (239), Expect(2) = 1e-31 Identities = 46/62 (74%), Positives = 50/62 (80%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 G MI SG PVN Y+D AVRHVLLRQGVLGIKVKIML WDP GK+GP PLPD V+I PK Sbjct: 155 GLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLAWDPSGKIGPKKPLPDHVSIVEPK 214 Query: 274 EE 269 +E Sbjct: 215 DE 216 Score = 59.7 bits (143), Expect(2) = 1e-31 Identities = 27/32 (84%), Positives = 30/32 (93%) Frame = -1 Query: 545 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGL 450 F+MESG+KGCEV+VSGKLR QRAKSMKF DGL Sbjct: 125 FIMESGSKGCEVVVSGKLRGQRAKSMKFVDGL 156
>RS3_DROME (Q06559) 40S ribosomal protein S3| Length = 246 Score = 90.5 bits (223), Expect(2) = 7e-30 Identities = 42/68 (61%), Positives = 50/68 (73%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 G MI SG P N+Y++ A RHVLLRQGVLGIKVK+ML +DPK K+GP PLPD V++ PK Sbjct: 157 GLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPK 216 Query: 274 EEDELRPP 251 EE P Sbjct: 217 EEKIYETP 224 Score = 59.7 bits (143), Expect(2) = 7e-30 Identities = 27/32 (84%), Positives = 30/32 (93%) Frame = -1 Query: 545 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGL 450 ++MESGAKGCEV+VSGKLR QRAKSMKF DGL Sbjct: 127 YIMESGAKGCEVVVSGKLRGQRAKSMKFVDGL 158
>RS3_MANSE (P48153) 40S ribosomal protein S3| Length = 243 Score = 86.7 bits (213), Expect(2) = 1e-28 Identities = 44/83 (53%), Positives = 54/83 (65%), Gaps = 1/83 (1%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 G MI SG P N+Y++ A RHVLLRQGVLGIKVKIML WD +GK GP P PD + + PK Sbjct: 156 GLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 215 Query: 274 EED-ELRPPALIEV*TPSSASRP 209 +E L P + I P+ +P Sbjct: 216 DEPAPLEPTSDIRSLAPAPLPQP 238 Score = 59.7 bits (143), Expect(2) = 1e-28 Identities = 27/32 (84%), Positives = 30/32 (93%) Frame = -1 Query: 545 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGL 450 F+MESGA+GCEV+VSGKLR QRAKSMKF DGL Sbjct: 126 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGL 157
>RS3_CAEEL (P48152) 40S ribosomal protein S3| Length = 247 Score = 83.2 bits (204), Expect(2) = 3e-26 Identities = 41/62 (66%), Positives = 47/62 (75%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 G MI SG PVN+YI AVRHV LRQGV+GIKVKIML +DP+G+ GP LPD V I P+ Sbjct: 157 GLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQ 216 Query: 274 EE 269 EE Sbjct: 217 EE 218 Score = 54.7 bits (130), Expect(2) = 3e-26 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = -1 Query: 545 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGL 450 F+MESGA+G EVIVSGKLR QRAK+MKF DGL Sbjct: 127 FIMESGAQGVEVIVSGKLRGQRAKAMKFVDGL 158
>RS3_YEAST (P05750) 40S ribosomal protein S3 (YS3) (RP13)| Length = 239 Score = 80.5 bits (197), Expect(2) = 4e-26 Identities = 42/70 (60%), Positives = 52/70 (74%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 G++I SGQPVN++ID A RHVL+RQGVLGIKVKIM D K + GP LPD VTI PK Sbjct: 154 GFLIHSGQPVNDFIDTATRHVLMRQGVLGIKVKIMRD-PAKSRTGPKA-LPDAVTIIEPK 211 Query: 274 EEDELRPPAL 245 EE+ + P++ Sbjct: 212 EEEPILAPSV 221 Score = 57.0 bits (136), Expect(2) = 4e-26 Identities = 26/31 (83%), Positives = 29/31 (93%) Frame = -1 Query: 545 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDG 453 +VMESGAKGCEV+VSGKLRA RAK+MKF DG Sbjct: 124 YVMESGAKGCEVVVSGKLRAARAKAMKFADG 154
>RS3_SCHPO (O60128) 40S ribosomal protein S3| Length = 249 Score = 75.1 bits (183), Expect(2) = 2e-24 Identities = 38/68 (55%), Positives = 48/68 (70%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 G+MI SGQP ++ID+A RHVLLRQGVLG+KVKIML P+ K LPD+V + PK Sbjct: 157 GFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVKIML---PEPKTRQKKSLPDIVVVLDPK 213 Query: 274 EEDELRPP 251 EE+ + P Sbjct: 214 EEEPITKP 221 Score = 56.6 bits (135), Expect(2) = 2e-24 Identities = 25/31 (80%), Positives = 29/31 (93%) Frame = -1 Query: 545 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDG 453 +VME+GAKGCEV++SGKLRA RAKSMKF DG Sbjct: 127 YVMEAGAKGCEVVISGKLRAARAKSMKFADG 157
>RS3_ENCCU (Q8SQM3) 40S ribosomal protein S3| Length = 228 Score = 65.5 bits (158), Expect(2) = 7e-18 Identities = 31/61 (50%), Positives = 41/61 (67%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 G +I SG V +YI+ V +QGV+GI+V+IML +DP+G LGP PLPD +TI P Sbjct: 166 GVLIHSGDAVKDYINTGYATVETKQGVIGIQVRIMLPYDPEGVLGPNYPLPDRITILEPS 225 Query: 274 E 272 E Sbjct: 226 E 226 Score = 44.3 bits (103), Expect(2) = 7e-18 Identities = 18/26 (69%), Positives = 25/26 (96%) Frame = -1 Query: 527 AKGCEVIVSGKLRAQRAKSMKFKDGL 450 A+GC++IVSGKL+ QRAKS+KF+DG+ Sbjct: 142 AQGCQIIVSGKLKGQRAKSVKFQDGV 167
>RS3_METBF (Q46GA1) 30S ribosomal protein S3P| Length = 311 Score = 39.3 bits (90), Expect(2) = 2e-07 Identities = 17/30 (56%), Positives = 22/30 (73%) Frame = -1 Query: 542 VMESGAKGCEVIVSGKLRAQRAKSMKFKDG 453 VM +GA GCEV++SGKL R++ KF DG Sbjct: 120 VMNAGALGCEVVISGKLTGARSRVEKFVDG 149 Score = 35.0 bits (79), Expect(2) = 2e-07 Identities = 21/61 (34%), Positives = 28/61 (45%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 GY+ SG PV+E +D + + G LG KV+I + P LPD T P Sbjct: 149 GYIKHSGNPVDEVVDEGFAVAIKKLGTLGCKVRI---------IQPGVVLPDSYTTTEPS 199 Query: 274 E 272 E Sbjct: 200 E 200
>RS3_METMA (Q8PV44) 30S ribosomal protein S3P| Length = 307 Score = 39.3 bits (90), Expect(2) = 3e-07 Identities = 17/30 (56%), Positives = 22/30 (73%) Frame = -1 Query: 542 VMESGAKGCEVIVSGKLRAQRAKSMKFKDG 453 VM +GA GCEV++SGKL R++ KF DG Sbjct: 120 VMNAGALGCEVVISGKLTGARSRVEKFVDG 149 Score = 34.3 bits (77), Expect(2) = 3e-07 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 1/82 (1%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 GY+ SG PV E +D + + G LG KV+I + P LPD + Sbjct: 149 GYIKHSGHPVEEVVDEGFAVAIKKLGTLGCKVRI---------IQPGVVLPDSYKVRESV 199 Query: 274 E-EDELRPPALIEV*TPSSASR 212 E E+ PA +V P+ A + Sbjct: 200 EIEEPAEKPAEKQVEKPAVAPK 221
>RS3_METAC (Q8TRU1) 30S ribosomal protein S3P| Length = 318 Score = 39.3 bits (90), Expect(2) = 9e-07 Identities = 17/30 (56%), Positives = 22/30 (73%) Frame = -1 Query: 542 VMESGAKGCEVIVSGKLRAQRAKSMKFKDG 453 VM +GA GCEV++SGKL R++ KF DG Sbjct: 120 VMNAGALGCEVVISGKLTGARSRVEKFVDG 149 Score = 32.7 bits (73), Expect(2) = 9e-07 Identities = 20/67 (29%), Positives = 32/67 (47%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 GY+ SG PV E +D + + G LG KV+I+ P L + + + V + P Sbjct: 149 GYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKVRII---QPGVVLPDSYKVRESVEVEEPA 205 Query: 274 EEDELRP 254 E+ +P Sbjct: 206 EKPAEKP 212
>RS3_PYRAB (Q9V1U1) 30S ribosomal protein S3P| Length = 210 Score = 37.4 bits (85), Expect(2) = 1e-06 Identities = 15/30 (50%), Positives = 23/30 (76%) Frame = -1 Query: 542 VMESGAKGCEVIVSGKLRAQRAKSMKFKDG 453 +M +GA+G E+ +SGKL +RAKS++F G Sbjct: 120 IMSNGARGVEIRISGKLTGERAKSVRFYQG 149 Score = 33.9 bits (76), Expect(2) = 1e-06 Identities = 20/65 (30%), Positives = 28/65 (43%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 GY+ G P + LL+ GV+G+KV IM P LPD + I Sbjct: 149 GYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM---------PPDARLPDEIEIIEKP 199 Query: 274 EEDEL 260 E+E+ Sbjct: 200 VEEEV 204
>RS3_METKA (Q8TX35) 30S ribosomal protein S3P| Length = 227 Score = 35.8 bits (81), Expect(2) = 2e-06 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = -2 Query: 436 GQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKE-EDEL 260 G+P +EY+ + + G +G+ V+IM P LPD + I PP+E EDEL Sbjct: 163 GEPGDEYMIEGYVQAVTKPGAIGVTVRIM---------PPDVELPDELEIRPPEEVEDEL 213 Query: 259 R 257 + Sbjct: 214 K 214 Score = 35.0 bits (79), Expect(2) = 2e-06 Identities = 15/30 (50%), Positives = 22/30 (73%) Frame = -1 Query: 542 VMESGAKGCEVIVSGKLRAQRAKSMKFKDG 453 +M +GAKG +I+SGKL RA++ KF +G Sbjct: 128 IMNAGAKGAMIILSGKLIGARARTEKFMEG 157
>RS3_PYRHO (O59424) 30S ribosomal protein S3P| Length = 210 Score = 36.6 bits (83), Expect(2) = 2e-06 Identities = 15/30 (50%), Positives = 23/30 (76%) Frame = -1 Query: 542 VMESGAKGCEVIVSGKLRAQRAKSMKFKDG 453 +M +GA+G E+ +SGKL +RAKS++F G Sbjct: 120 IMNNGARGVEIRLSGKLTGERAKSVRFYQG 149 Score = 34.3 bits (77), Expect(2) = 2e-06 Identities = 20/65 (30%), Positives = 28/65 (43%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 GY+ G P + LL+ GV+G+KV IM P LPD + I Sbjct: 149 GYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM---------PPDARLPDEIEIVEKP 199 Query: 274 EEDEL 260 E+E+ Sbjct: 200 AEEEV 204
>RS3_PYRFU (Q8U004) 30S ribosomal protein S3P| Length = 210 Score = 36.6 bits (83), Expect(2) = 3e-06 Identities = 15/30 (50%), Positives = 23/30 (76%) Frame = -1 Query: 542 VMESGAKGCEVIVSGKLRAQRAKSMKFKDG 453 +M +GA+G E+ +SGKL +RAKS++F G Sbjct: 120 IMNNGARGVEIRLSGKLTGERAKSIRFYQG 149 Score = 33.5 bits (75), Expect(2) = 3e-06 Identities = 20/65 (30%), Positives = 28/65 (43%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 GY+ G P + LL+ GV+G+KV IM P LPD + I Sbjct: 149 GYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM---------PPGARLPDEIEIIEKP 199 Query: 274 EEDEL 260 E+E+ Sbjct: 200 VEEEV 204
>RS3_METTH (O26116) 30S ribosomal protein S3P| Length = 258 Score = 36.6 bits (83), Expect(2) = 4e-06 Identities = 15/30 (50%), Positives = 22/30 (73%) Frame = -1 Query: 542 VMESGAKGCEVIVSGKLRAQRAKSMKFKDG 453 +M +GA+G EV +SGK+R R+ + KF DG Sbjct: 119 IMAAGAQGVEVTISGKIRGARSATAKFTDG 148 Score = 33.1 bits (74), Expect(2) = 4e-06 Identities = 20/60 (33%), Positives = 29/60 (48%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 GY+ G+P +++ V L+ GVLG+ V+IM P LPD V I P+ Sbjct: 148 GYIKKCGEPSVKHVREGFATVQLKPGVLGVYVRIM---------PPDVVLPDKVEIEDPR 198
>RS3_METMP (Q6LXE7) 30S ribosomal protein S3P| Length = 211 Score = 39.3 bits (90), Expect(2) = 4e-06 Identities = 18/30 (60%), Positives = 23/30 (76%) Frame = -1 Query: 542 VMESGAKGCEVIVSGKLRAQRAKSMKFKDG 453 VM SGAKG +IVSGKL +R+++ KF DG Sbjct: 119 VMGSGAKGVAIIVSGKLSGERSRTEKFMDG 148 Score = 30.4 bits (67), Expect(2) = 4e-06 Identities = 17/56 (30%), Positives = 27/56 (48%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTI 287 GYM G+P ++ + + L+ G++G+ VKIM P LPD + I Sbjct: 148 GYMKHCGEPAEALVNKSHQLAKLKLGIVGVTVKIM---------RPDVSLPDEIVI 194
>RS3_METJA (P54034) 30S ribosomal protein S3P| Length = 208 Score = 36.2 bits (82), Expect(2) = 5e-06 Identities = 17/30 (56%), Positives = 22/30 (73%) Frame = -1 Query: 542 VMESGAKGCEVIVSGKLRAQRAKSMKFKDG 453 VM +GAKG VI+SGKL +RA++ KF G Sbjct: 119 VMNAGAKGVIVIISGKLTGERARTEKFMAG 148 Score = 33.1 bits (74), Expect(2) = 5e-06 Identities = 22/66 (33%), Positives = 31/66 (46%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 GYM G+P E +D + GV+G+ VKIM P LPD + I K Sbjct: 148 GYMKHCGEPAEELVDKGRAIAKTKPGVIGVTVKIM---------RPDVLLPDEIII---K 195 Query: 274 EEDELR 257 E+ E++ Sbjct: 196 EDAEVK 201
>RS3_PYRKO (Q5JDH5) 30S ribosomal protein S3P| Length = 209 Score = 36.6 bits (83), Expect(2) = 7e-06 Identities = 15/30 (50%), Positives = 23/30 (76%) Frame = -1 Query: 542 VMESGAKGCEVIVSGKLRAQRAKSMKFKDG 453 +M +GA+G E+ +SGKL +RAKS++F G Sbjct: 120 IMRNGARGVEIRLSGKLTGERAKSVRFYQG 149 Score = 32.3 bits (72), Expect(2) = 7e-06 Identities = 19/63 (30%), Positives = 26/63 (41%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 GY+ G P + L+ GV+G+KV IM P LPD + I Sbjct: 149 GYLAKVGNPAETLVSRGYAQAQLKLGVIGVKVSIM---------PPDAKLPDEIEIKEIV 199 Query: 274 EED 266 EE+ Sbjct: 200 EEE 202
>RS3_HALMA (P20281) 30S ribosomal protein S3P (HmaS3) (HS1)| Length = 304 Score = 34.3 bits (77), Expect(2) = 1e-05 Identities = 16/52 (30%), Positives = 28/52 (53%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPD 299 GY+ +G+P E +D+ V +++ G +G++VKI + P LPD Sbjct: 149 GYVKHNGEPAEEIVDSGVGVAVMKLGTIGVRVKI---------IPPNAELPD 191 Score = 33.9 bits (76), Expect(2) = 1e-05 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = -1 Query: 542 VMESGAKGCEVIVSGKLRAQRAKSMKFKDG 453 +MESGA G E+++SGK+ R++ KF G Sbjct: 120 IMESGALGAEIVLSGKVTGARSRVEKFNRG 149
>RS3_NATPD (Q3IMY2) 30S ribosomal protein S3P| Length = 305 Score = 34.3 bits (77), Expect(2) = 2e-05 Identities = 15/30 (50%), Positives = 21/30 (70%) Frame = -1 Query: 542 VMESGAKGCEVIVSGKLRAQRAKSMKFKDG 453 +MESGA G E+I+SGK+ R++ KF G Sbjct: 120 IMESGALGAEIILSGKVTGARSRVEKFNRG 149 Score = 32.7 bits (73), Expect(2) = 2e-05 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 GY+ +G+P +D+ V +++ G +G++VKI + P LPD ++ Sbjct: 149 GYIKHNGEPAESIVDSGVGTAVMKLGTIGVQVKI---------IPPEAELPDDFEVYEDI 199 Query: 274 E-EDELRPP 251 E ED + P Sbjct: 200 EVEDFVEEP 208
>RS3_ARCFU (O28360) 30S ribosomal protein S3P| Length = 229 Score = 41.2 bits (95), Expect(2) = 7e-05 Identities = 18/34 (52%), Positives = 26/34 (76%) Frame = -1 Query: 554 FFAFVMESGAKGCEVIVSGKLRAQRAKSMKFKDG 453 F +ME+GAKGCE+ +SGKL ++RA++ KF G Sbjct: 115 FLYRIMEAGAKGCEIEISGKLVSERARTEKFVAG 148 Score = 24.3 bits (51), Expect(2) = 7e-05 Identities = 13/52 (25%), Positives = 22/52 (42%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPD 299 G ++ +G P + + + GVLG+ V+I + P LPD Sbjct: 148 GTIVHTGDPAESMVQKGFDIAIKKLGVLGVSVRI---------IPPDVTLPD 190
>RS3_HALSA (P15009) 30S ribosomal protein S3P (HS4) (HHAS3)| Length = 302 Score = 33.9 bits (76), Expect(2) = 1e-04 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = -1 Query: 542 VMESGAKGCEVIVSGKLRAQRAKSMKFKDG 453 +MESGA G E+++SGK+ R + KF G Sbjct: 120 IMESGALGAEIVLSGKVTGNRGRVEKFNRG 149 Score = 30.8 bits (68), Expect(2) = 1e-04 Identities = 17/65 (26%), Positives = 30/65 (46%) Frame = -2 Query: 454 GYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 275 GY+ +G+P E +D +++ G +G+ VKI + P LPD I Sbjct: 149 GYIKHNGEPAEEIVDHGKGVAVMKLGTIGVNVKI---------IPPNAELPDDFEIQEDA 199 Query: 274 EEDEL 260 + ++L Sbjct: 200 DIEDL 204
>RS3_SULAC (Q4JB46) 30S ribosomal protein S3P| Length = 231 Score = 40.4 bits (93), Expect = 0.003 Identities = 20/37 (54%), Positives = 25/37 (67%) Frame = -1 Query: 563 AMVFFAFVMESGAKGCEVIVSGKLRAQRAKSMKFKDG 453 A + +M SGA G EVIVSGKL ++RAK K K+G Sbjct: 114 AFITIRRIMSSGAVGAEVIVSGKLTSERAKYEKLKEG 150
>RS3_SULTO (Q975I7) 30S ribosomal protein S3P| Length = 225 Score = 39.3 bits (90), Expect = 0.008 Identities = 18/38 (47%), Positives = 26/38 (68%) Frame = -1 Query: 563 AMVFFAFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGL 450 A + +M +GA G EVI+SGKL ++RAK K K+G+ Sbjct: 114 AFITIRRIMNAGALGAEVIISGKLTSERAKYEKLKEGV 151
>RS3_SULSO (Q9UXA0) 30S ribosomal protein S3P| Length = 229 Score = 37.7 bits (86), Expect = 0.023 Identities = 16/38 (42%), Positives = 25/38 (65%) Frame = -1 Query: 563 AMVFFAFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGL 450 A + +M +GA G E+I+SGKL +RA+ K K+G+ Sbjct: 114 AFISMRRIMNAGALGAEIIISGKLTTERARYEKLKEGI 151
>RS3_AERPE (Q9YF78) 30S ribosomal protein S3P| Length = 246 Score = 35.4 bits (80), Expect = 0.11 Identities = 15/30 (50%), Positives = 22/30 (73%) Frame = -1 Query: 542 VMESGAKGCEVIVSGKLRAQRAKSMKFKDG 453 +M +GA G E+ +SGKL ++RA+ KFK G Sbjct: 122 IMSNGALGVEITISGKLTSERARFEKFKAG 151
>RS3_THEAC (Q9HIR5) 30S ribosomal protein S3P| Length = 225 Score = 28.5 bits (62), Expect(2) = 0.15 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = -1 Query: 539 MESGAKGCEVIVSGKLRAQRAKSMKF 462 +++GAKG + +SGK+ +RA+ KF Sbjct: 120 IQAGAKGVLIKISGKISGERARYQKF 145 Score = 25.4 bits (54), Expect(2) = 0.15 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = -2 Query: 439 SGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTI 287 SG+P ++ + L+ G+LG+ VKI L P LPD+ +I Sbjct: 153 SGEPGSKGMITGFSTAKLKVGILGVTVKI---------LNPEYKLPDVFSI 194
>RS3_PYRAE (Q8ZWI0) 30S ribosomal protein S3P| Length = 218 Score = 34.7 bits (78), Expect = 0.19 Identities = 15/26 (57%), Positives = 21/26 (80%) Frame = -1 Query: 542 VMESGAKGCEVIVSGKLRAQRAKSMK 465 +ME+GAKG E++VSGKL +RA+ K Sbjct: 130 LMEAGAKGFEIVVSGKLSTERARFEK 155
>RS3_THEVO (Q97BX1) 30S ribosomal protein S3P| Length = 225 Score = 27.3 bits (59), Expect(2) = 0.42 Identities = 10/26 (38%), Positives = 19/26 (73%) Frame = -1 Query: 539 MESGAKGCEVIVSGKLRAQRAKSMKF 462 +++GA+G + +SGK+ +RA+ KF Sbjct: 120 IDAGARGVLIKISGKISGERARYQKF 145 Score = 25.0 bits (53), Expect(2) = 0.42 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = -2 Query: 439 SGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTI 287 SG+P ++ + L+ G+LG+ VKI L P LPD+ +I Sbjct: 153 SGEPGSKGMLVGFSTAKLKVGILGVTVKI---------LNPEYKLPDVFSI 194
>IL2RB_PANTR (Q38J84) Interleukin-2 receptor beta chain precursor (IL-2| receptor) (P70-75) (High affinity IL-2 receptor beta subunit) (CD122 antigen) Length = 551 Score = 33.5 bits (75), Expect = 0.43 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = -2 Query: 367 IKVKIMLDWDPKGKLGPTTP-LPDLVTIHPPKE 272 ++ ++ DWDP+ LGP TP +PDLV PP E Sbjct: 459 LQERVPRDWDPQ-PLGPPTPGVPDLVDFQPPPE 490
>IL2RB_HUMAN (P14784) Interleukin-2 receptor beta chain precursor (IL-2| receptor) (P70-75) (p75) (High affinity IL-2 receptor beta subunit) (CD122 antigen) Length = 551 Score = 33.5 bits (75), Expect = 0.43 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = -2 Query: 367 IKVKIMLDWDPKGKLGPTTP-LPDLVTIHPPKE 272 ++ ++ DWDP+ LGP TP +PDLV PP E Sbjct: 459 LQERVPRDWDPQ-PLGPPTPGVPDLVDFQPPPE 490
>RS3_FRATT (Q5NHW2) 30S ribosomal protein S3| Length = 222 Score = 28.1 bits (61), Expect(2) = 1.1 Identities = 15/30 (50%), Positives = 23/30 (76%), Gaps = 1/30 (3%) Frame = -1 Query: 539 MESGAKGCEVIVSGKL-RAQRAKSMKFKDG 453 M+SGAKG +++VSG+L A+ A+S +DG Sbjct: 142 MKSGAKGIKIMVSGRLGGAEIARSEWARDG 171 Score = 22.7 bits (47), Expect(2) = 1.1 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = -2 Query: 415 IDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGP 317 +D A L GV+G+KV W KG++ P Sbjct: 182 VDYATAEALTTYGVIGVKV-----WIYKGEILP 209
>RS3_DEIRA (Q9RXJ6) 30S ribosomal protein S3| Length = 249 Score = 31.6 bits (70), Expect = 1.6 Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 4/38 (10%) Frame = -1 Query: 542 VMESGAKGCEVIVSGKL-RAQRAKSMKFKDG---LHDL 441 VMESGA+G +VI+SG+L A++A++ K +G LH L Sbjct: 142 VMESGARGVKVILSGRLGGAEQARTEKVLEGRVPLHTL 179
>RS3_THET8 (P80372) 30S ribosomal protein S3| Length = 238 Score = 30.0 bits (66), Expect = 4.7 Identities = 13/17 (76%), Positives = 16/17 (94%) Frame = -1 Query: 542 VMESGAKGCEVIVSGKL 492 VMESGAKG +VIVSG++ Sbjct: 140 VMESGAKGAKVIVSGRI 156
>RS3_THET2 (P62663) 30S ribosomal protein S3| Length = 238 Score = 30.0 bits (66), Expect = 4.7 Identities = 13/17 (76%), Positives = 16/17 (94%) Frame = -1 Query: 542 VMESGAKGCEVIVSGKL 492 VMESGAKG +VIVSG++ Sbjct: 140 VMESGAKGAKVIVSGRI 156
>CBID_CHRVO (Q7NXR0) Putative cobalt-precorrin-6A synthase [deacetylating] (EC| 2.1.1.-) Length = 377 Score = 29.6 bits (65), Expect = 6.1 Identities = 23/56 (41%), Positives = 27/56 (48%) Frame = +2 Query: 221 TTGSLDLNQSRGAQLVLLLRGVDGDEVRQGGGRAKFALGVPVKHNLHLDTKNALSE 388 TTGS + A L+LLL GVD DEV F L VPV+ LD +E Sbjct: 23 TTGSCATAAVKAA-LMLLLDGVDADEVFISLPDPDFYLAVPVESVAWLDENTVRAE 77
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 29.6 bits (65), Expect = 6.1 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = -2 Query: 337 PKGKLGPTTPLPDLVTIHPPKEEDELRPPAL 245 P ++ +PLP + + PP EE L PPAL Sbjct: 646 PPPEVSRLSPLPVVSRLSPPPEESPLSPPAL 676
>IL2RB_MACFA (Q38J85) Interleukin-2 receptor beta chain precursor (IL-2| receptor) (P70-75) (High affinity IL-2 receptor beta subunit) (CD122 antigen) Length = 551 Score = 29.6 bits (65), Expect = 6.1 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Frame = -2 Query: 367 IKVKIMLDWDPKGKLGPTTP-LPDLVTIHPPKE 272 ++ ++ DWDP+ LGP TP +PDLV P E Sbjct: 459 LQERVPRDWDPQP-LGPPTPGVPDLVDFQPRPE 490
>RT03_ORYSA (P46773) Mitochondrial ribosomal protein S3| Length = 538 Score = 29.3 bits (64), Expect = 8.0 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -2 Query: 424 NEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGK 326 N+ ID A+ V R G+ G+KV+I + KG+ Sbjct: 498 NQKIDYALAEVSTRNGISGVKVRISYSQNKKGR 530 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,768,094 Number of Sequences: 219361 Number of extensions: 1362999 Number of successful extensions: 3953 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 3807 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3948 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
