ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18m14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full... 141 3e-30
2gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome... 70 1e-08
3gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome... 70 1e-08
4gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome... 70 1e-08
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 70 1e-08
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 70 1e-08
7gb|AY107519.1| Zea mays PCO078033 mRNA sequence 64 6e-07
8gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome... 60 1e-05
9dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 1e-05
10dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 1e-05
11dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 4e-05
12ref|XM_477999.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.14
13dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
14dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
15dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.56
16dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.56
17dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.56
18ref|XM_474642.1| Oryza sativa (japonica cultivar-group), predic... 42 2.2
19gb|AC101777.8| Mus musculus chromosome 1, clone RP24-123J3, comp... 42 2.2
20gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1... 42 2.2
21ref|XM_746399.1| Aspergillus fumigatus Af293 actin-related prote... 42 2.2
22ref|XM_501466.1| Yarrowia lipolytica CLIB122, YALI0C05258g predi... 42 2.2
23emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4,... 42 2.2
24emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4,... 42 2.2
25emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromosome 4,... 42 2.2
26emb|AL606642.3|OSJN00073 Oryza sativa genomic DNA, chromosome 4,... 42 2.2
27dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
28dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
29gb|AC157949.1| Mus musculus BAC clone RP23-148A16 from chromosom... 42 2.2
30gb|AC131072.13| Mus musculus chromosome 1, clone RP23-396F21, co... 42 2.2
31dbj|AP005719.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
32dbj|AP005197.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
33dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
34gb|AC174827.3| Cavia porcellus clone CH234-477P24, complete sequ... 42 2.2
35emb|AL442118.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 2.2
36gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.2
37emb|AL772414.3|CNS08C9S Oryza sativa chromosome 12, . BAC OSJNBa... 42 2.2
38emb|AL732639.5|CNS08C9E Oryza sativa chromosome 12, . BAC OSJNBa... 42 2.2
39emb|AL954870.3|CNS08CD9 Oryza sativa chromosome 12, . BAC OSJNBb... 42 2.2
40emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 42 2.2
41gb|AC134248.3| Mus musculus BAC clone RP23-338G21 from chromosom... 40 8.8
42ref|XM_989083.1| PREDICTED: Mus musculus transglutaminase 4 (pro... 40 8.8
43ref|XM_791236.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 8.8
44emb|AL353701.15| Human DNA sequence from clone RP11-203M2 on chr... 40 8.8
45emb|BX890589.11| Zebrafish DNA sequence from clone DKEY-14I16 in... 40 8.8
46gb|AC011291.8| Homo sapiens BAC clone RP11-67G7 from 2, complete... 40 8.8
47emb|BX511027.20| Zebrafish DNA sequence from clone CH211-281P14 ... 40 8.8
48dbj|AK035279.1| Mus musculus adult male urinary bladder cDNA, RI... 40 8.8
49gb|AC017087.5|AC017087 Homo sapiens BAC clone RP11-495H13 from 4... 40 8.8
50emb|BX005328.9| Zebrafish DNA sequence from clone DKEY-63D15 in ... 40 8.8
51gb|AC007132.3| Homo sapiens BAC clone RP11-444A22 from 2, comple... 40 8.8
52gb|AC087798.10| Homo sapiens 12 BAC RP11-788H18 (Roswell Park Ca... 40 8.8
53gb|AF486627.1| Mus musculus experimental autoimmune prostatitis ... 40 8.8
54dbj|AP001458.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.8
55gb|AC133650.4| Mus musculus BAC clone RP23-453B15 from 9, comple... 40 8.8
56ref|NM_177911.2| Mus musculus transglutaminase 4 (prostate) (Tgm... 40 8.8
57emb|AL672285.8| Mouse DNA sequence from clone RP23-45G5 on chrom... 40 8.8
58emb|AL805949.4| Mouse DNA sequence from clone RP23-424K9 on chro... 40 8.8
59emb|AL645736.9| Mouse DNA sequence from clone RP23-474J7 on chro... 40 8.8 
>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA
           sequence
          Length = 770

 Score =  141 bits (71), Expect = 3e-30
 Identities = 132/151 (87%), Gaps = 1/151 (0%)
 Strand = Plus / Minus

                                                                       
Query: 429 gatccaagcacaatgtctatgacgatgactttccctcctgctttcacgtggaggaacggc 488
           ||||||||||| |||||||||| ||| ||||| |||||   |||| || | ||| | |||
Sbjct: 334 gatccaagcactatgtctatgatgatcacttttcctccca-tttctcgggaaggtatggc 276

                                                                       
Query: 489 cttcctgcattgtgcgaggatcttgatgcaatcctcgtcgctccagaagtgcagaacaag 548
           |||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 275 cttcttgcattgagcgaggatcttgatgcaatcctcgtcgctccagaagtgtagaacaag 216

                                          
Query: 549 cttgagcaacacggcttgagcaggtgggacg 579
           ||||||||  ||||| ||||| |||||||||
Sbjct: 215 cttgagcatgacggcctgagctggtgggacg 185



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                       
Query: 246 caaccttatggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatag 305
           |||||||||||||||||||| |||||| |||||   || || ||||||||||||||||||
Sbjct: 517 caaccttatggatagacctcgatgacacctcgatggccaagtttcttgacaatcttatag 458
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>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0097K08 map C827S, complete sequence
          Length = 137870

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 59/67 (88%)
 Strand = Plus / Minus

                                                                         
Query: 253   atggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactga 312
             ||||||||||||| |  |||||||||||||| ||||||||| | ||||||||| ||||||
Sbjct: 45028 atggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagtcactga 44969

                    
Query: 313   agccagc 319
             | |||||
Sbjct: 44968 atccagc 44962



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 57/67 (85%), Gaps = 1/67 (1%)
 Strand = Plus / Minus

                                                                         
Query: 549   cttgagcaacacggcttgagcaggtgggacgacgtggaaacaggtcaccagaaacatact 608
             |||||| | |||||||||||||||||||||  | | |||||| |||||| | |||||| |
Sbjct: 44348 cttgagaagcacggcttgagcaggtgggacagcat-gaaacatgtcacctgcaacatagt 44290

                    
Query: 609   taaccac 615
             |||||||
Sbjct: 44289 taaccac 44283
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>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0026P08 map near C827S, complete sequence
          Length = 148676

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                         
Query: 253   atggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactga 312
             ||||||||||||| |  |||||||||||||| ||||||||| | ||||||||| ||||||
Sbjct: 50747 atggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagtcactga 50806

                    
Query: 313   agccagc 319
             | |||||
Sbjct: 50807 atccagc 50813



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 57/67 (85%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                         
Query: 549   cttgagcaacacggcttgagcaggtgggacgacgtggaaacaggtcaccagaaacatact 608
             |||||| | |||||||||||||||||||||  | | |||||| |||||| | |||||| |
Sbjct: 51427 cttgagaagcacggcttgagcaggtgggacagcat-gaaacatgtcacctgcaacatagt 51485

                    
Query: 609   taaccac 615
             |||||||
Sbjct: 51486 taaccac 51492
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>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05
              map C53961S, complete sequence
          Length = 175121

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 131/163 (80%)
 Strand = Plus / Plus

                                                                          
Query: 252    tatggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactg 311
              ||||| |||||||||| |||  ||||||||||||| ||||| ||||| || ||| |||||
Sbjct: 140244 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 140303

                                                                          
Query: 312    aagccagccttggtgaagatctcgttccagtccttctcttcccgctgtcggcctctcgtc 371
              ||||| || ||| ||||||  ||   ||| || ||||| || |||||||||||| | |||
Sbjct: 140304 aagcctgctttgctgaagagatcacgccaatcattctcgtctcgctgtcggcctttggtc 140363

                                                         
Query: 372    atcaccagcatgagcatatccatgaggtgctgggtttccagca 414
              | ||||| |||   || |||||||||| |||||| ||| ||||
Sbjct: 140364 accaccatcatagccacatccatgaggagctgggcttctagca 140406



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 55/61 (90%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                          
Query: 256    gatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagc 315
              ||||||||||||  | ||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct: 138362 gatagacctcaaatatagctcgagctcccag-ttcttcacaatcttatagtcactgaagc 138420

               
Query: 316    c 316
              |
Sbjct: 138421 c 138421



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                 
Query: 255    ggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatag 305
              ||||||||||||| |||||||||||||| ||  || || ||||||||||||
Sbjct: 115956 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatag 116006



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                  
Query: 481   ggaacggccttcctgcattgtgcgaggatcttgatgcaatcctcgtcgctcca 533
             ||||| || ||| ||||||| || |||||||| ||||| ||||||||||||||
Sbjct: 81114 ggaaccgctttcttgcattgggctaggatctttatgcagtcctcgtcgctcca 81166



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                         
Query: 255   ggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaag 314
             ||||||||||||||||||   |||| |||||  ||||| |||||||| ||| | ||||||
Sbjct: 80889 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtccctgaag 80948

               
Query: 315   cc 316
             ||
Sbjct: 80949 cc 80950
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 131/163 (80%)
 Strand = Plus / Plus

                                                                            
Query: 252      tatggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactg 311
                ||||| |||||||||| |||  ||||||||||||| ||||| ||||| || ||| |||||
Sbjct: 11353886 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 11353945

                                                                            
Query: 312      aagccagccttggtgaagatctcgttccagtccttctcttcccgctgtcggcctctcgtc 371
                ||||| || ||| ||||||  ||   ||| || ||||| || |||||||||||| | |||
Sbjct: 11353946 aagcctgctttgctgaagagatcacgccaatcattctcgtctcgctgtcggcctttggtc 11354005

                                                           
Query: 372      atcaccagcatgagcatatccatgaggtgctgggtttccagca 414
                | ||||| |||   || |||||||||| |||||| ||| ||||
Sbjct: 11354006 accaccatcatagccacatccatgaggagctgggcttctagca 11354048



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                           
Query: 253     atggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactga 312
               ||||||||||||| |  |||||||||||||| ||||||||| | ||||||||| ||||||
Sbjct: 7137527 atggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagtcactga 7137586

                      
Query: 313     agccagc 319
               | |||||
Sbjct: 7137587 atccagc 7137593



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 55/61 (90%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                            
Query: 256      gatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagc 315
                ||||||||||||  | ||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct: 11352004 gatagacctcaaatatagctcgagctcccag-ttcttcacaatcttatagtcactgaagc 11352062

                 
Query: 316      c 316
                |
Sbjct: 11352063 c 11352063



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                          
Query: 256      gatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaa 313
                |||||||||| | |||||||||||| || || ||||| |||||||||||| |||||||
Sbjct: 11549315 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaa 11549372



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                   
Query: 255      ggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatag 305
                ||||||||||||| |||||||||||||| ||  || || ||||||||||||
Sbjct: 11329598 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatag 11329648



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                     
Query: 481      ggaacggccttcctgcattgtgcgaggatcttgatgcaatcctcgtcgctcca 533
                ||||| || ||| ||||||| || |||||||| ||||| ||||||||||||||
Sbjct: 11294756 ggaaccgctttcttgcattgggctaggatctttatgcagtcctcgtcgctcca 11294808



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 57/67 (85%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                           
Query: 549     cttgagcaacacggcttgagcaggtgggacgacgtggaaacaggtcaccagaaacatact 608
               |||||| | |||||||||||||||||||||  | | |||||| |||||| | |||||| |
Sbjct: 7138207 cttgagaagcacggcttgagcaggtgggacagcat-gaaacatgtcacctgcaacatagt 7138265

                      
Query: 609     taaccac 615
               |||||||
Sbjct: 7138266 taaccac 7138272



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                            
Query: 255      ggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaag 314
                ||||||||||||||||||   |||| |||||  ||||| |||||||| ||| | ||||||
Sbjct: 11294531 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtccctgaag 11294590

                  
Query: 315      cc 316
                ||
Sbjct: 11294591 cc 11294592



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                            
Query: 258      tagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagcca 317
                |||||||||||||||  ||||||||| || || || |  ||||| ||| | ||||| |||
Sbjct: 11485504 tagacctcaatgacacatcgagctcctagtttgttcatgatcttgtagtcgctgaatcca 11485445

                                 
Query: 318      gccttggtgaagatctc 334
                || || |||||||||||
Sbjct: 11485444 gcattagtgaagatctc 11485428



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                            
Query: 252      tatggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactg 311
                |||||||||||||||| ||   |||||  ||| |||||||| |||||||| ||  |||||
Sbjct: 11437238 tatggatagacctcaaagatgcctcgaattcctagcttcttcacaatcttgtaatcactg 11437297

                     
Query: 312      aagcc 316
                |||||
Sbjct: 11437298 aagcc 11437302



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 54/64 (84%), Gaps = 1/64 (1%)
 Strand = Plus / Plus

                                                                            
Query: 549      cttgagcaacacggcttgagcaggtgggacgacgtggaaacaggtcaccagaaacatact 608
                |||||||| |||||||||||| ||||| |||  |||| |||| |||||| | |||||| |
Sbjct: 11494091 cttgagcatcacggcttgagccggtggcacggtgtgg-aacaagtcacctgcaacatagt 11494149

                    
Query: 609      taac 612
                ||||
Sbjct: 11494150 taac 11494153



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 274      ctcgagctcccagcttcttgacaatcttatag 305
                |||||||||| ||| |||| ||||||||||||
Sbjct: 11490647 ctcgagctccaagcatcttcacaatcttatag 11490678
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 131/163 (80%)
 Strand = Plus / Plus

                                                                            
Query: 252      tatggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactg 311
                ||||| |||||||||| |||  ||||||||||||| ||||| ||||| || ||| |||||
Sbjct: 11433075 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 11433134

                                                                            
Query: 312      aagccagccttggtgaagatctcgttccagtccttctcttcccgctgtcggcctctcgtc 371
                ||||| || ||| ||||||  ||   ||| || ||||| || |||||||||||| | |||
Sbjct: 11433135 aagcctgctttgctgaagagatcacgccaatcattctcgtctcgctgtcggcctttggtc 11433194

                                                           
Query: 372      atcaccagcatgagcatatccatgaggtgctgggtttccagca 414
                | ||||| |||   || |||||||||| |||||| ||| ||||
Sbjct: 11433195 accaccatcatagccacatccatgaggagctgggcttctagca 11433237



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                           
Query: 253     atggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactga 312
               ||||||||||||| |  |||||||||||||| ||||||||| | ||||||||| ||||||
Sbjct: 7203498 atggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagtcactga 7203557

                      
Query: 313     agccagc 319
               | |||||
Sbjct: 7203558 atccagc 7203564



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 55/61 (90%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                            
Query: 256      gatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagc 315
                ||||||||||||  | ||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct: 11431193 gatagacctcaaatatagctcgagctcccag-ttcttcacaatcttatagtcactgaagc 11431251

                 
Query: 316      c 316
                |
Sbjct: 11431252 c 11431252



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                          
Query: 256      gatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaa 313
                |||||||||| | |||||||||||| || || ||||| |||||||||||| |||||||
Sbjct: 11628504 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaa 11628561



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                   
Query: 255      ggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatag 305
                ||||||||||||| |||||||||||||| ||  || || ||||||||||||
Sbjct: 11408787 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatag 11408837



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                     
Query: 481      ggaacggccttcctgcattgtgcgaggatcttgatgcaatcctcgtcgctcca 533
                ||||| || ||| ||||||| || |||||||| ||||| ||||||||||||||
Sbjct: 11373945 ggaaccgctttcttgcattgggctaggatctttatgcagtcctcgtcgctcca 11373997



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 57/67 (85%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                           
Query: 549     cttgagcaacacggcttgagcaggtgggacgacgtggaaacaggtcaccagaaacatact 608
               |||||| | |||||||||||||||||||||  | | |||||| |||||| | |||||| |
Sbjct: 7204178 cttgagaagcacggcttgagcaggtgggacagcat-gaaacatgtcacctgcaacatagt 7204236

                      
Query: 609     taaccac 615
               |||||||
Sbjct: 7204237 taaccac 7204243



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                            
Query: 255      ggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaag 314
                ||||||||||||||||||   |||| |||||  ||||| |||||||| ||| | ||||||
Sbjct: 11373720 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtccctgaag 11373779

                  
Query: 315      cc 316
                ||
Sbjct: 11373780 cc 11373781



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                            
Query: 258      tagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagcca 317
                |||||||||||||||  ||||||||| || || || |  ||||| ||| | ||||| |||
Sbjct: 11564693 tagacctcaatgacacatcgagctcctagtttgttcatgatcttgtagtcgctgaatcca 11564634

                                 
Query: 318      gccttggtgaagatctc 334
                || || |||||||||||
Sbjct: 11564633 gcattagtgaagatctc 11564617



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                            
Query: 252      tatggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactg 311
                |||||||||||||||| ||   |||||  ||| |||||||| |||||||| ||  |||||
Sbjct: 11516427 tatggatagacctcaaagatgcctcgaattcctagcttcttcacaatcttgtaatcactg 11516486

                     
Query: 312      aagcc 316
                |||||
Sbjct: 11516487 aagcc 11516491



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 54/64 (84%), Gaps = 1/64 (1%)
 Strand = Plus / Plus

                                                                            
Query: 549      cttgagcaacacggcttgagcaggtgggacgacgtggaaacaggtcaccagaaacatact 608
                |||||||| |||||||||||| ||||| |||  |||| |||| |||||| | |||||| |
Sbjct: 11573280 cttgagcatcacggcttgagccggtggcacggtgtgg-aacaagtcacctgcaacatagt 11573338

                    
Query: 609      taac 612
                ||||
Sbjct: 11573339 taac 11573342



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 274      ctcgagctcccagcttcttgacaatcttatag 305
                |||||||||| ||| |||| ||||||||||||
Sbjct: 11569836 ctcgagctccaagcatcttcacaatcttatag 11569867
to top
>gb|AY107519.1| Zea mays PCO078033 mRNA sequence
          Length = 1299

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                               
Query: 505 aggatcttgatgcaatcctcgtcgctccagaagtgcagaacaagcttgagca 556
           |||||||||| ||| || |||||||||||||||||||| || ||||||||||
Sbjct: 853 aggatcttgacgcagtcgtcgtcgctccagaagtgcaggacgagcttgagca 802



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 65/79 (82%)
 Strand = Plus / Minus

                                                                        
Query: 253  atggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactga 312
            |||| |||||||| |||||| | |||||||| |  |||||||||| ||| ||| |   ||
Sbjct: 1107 atgggtagacctcgatgacaccacgagctccgattttcttgacaaccttgtagtcggaga 1048

                               
Query: 313  agccagccttggtgaagat 331
            ||||||||||||| |||||
Sbjct: 1047 agccagccttggtaaagat 1029
to top
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0005P21, complete sequence
          Length = 147381

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 256   gatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaa 313
             |||||||||| | |||||||||||| || || ||||| |||||||||||| |||||||
Sbjct: 64473 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaa 64416



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                          
Query: 258    tagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagcca 317
              |||||||||||||||  ||||||||| || || || |  ||||| ||| | ||||| |||
Sbjct: 128284 tagacctcaatgacacatcgagctcctagtttgttcatgatcttgtagtcgctgaatcca 128343

                               
Query: 318    gccttggtgaagatctc 334
              || || |||||||||||
Sbjct: 128344 gcattagtgaagatctc 128360



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 274    ctcgagctcccagcttcttgacaatcttatag 305
              |||||||||| ||| |||| ||||||||||||
Sbjct: 123141 ctcgagctccaagcatcttcacaatcttatag 123110



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 54/64 (84%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                          
Query: 549    cttgagcaacacggcttgagcaggtgggacgacgtggaaacaggtcaccagaaacatact 608
              |||||||| |||||||||||| ||||| |||  |||| |||| |||||| | |||||| |
Sbjct: 119697 cttgagcatcacggcttgagccggtggcacggtgtgg-aacaagtcacctgcaacatagt 119639

                  
Query: 609    taac 612
              ||||
Sbjct: 119638 taac 119635
to top
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full
           insert sequence
          Length = 1362

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 88/106 (83%), Gaps = 1/106 (0%)
 Strand = Plus / Minus

                                                                       
Query: 507 gatcttgatgcaatcctcgtcgctccagaagtgcagaacaagcttgagcaacacggcttg 566
           |||||| | |||||| || |||||||||  |||||  ||||||||||||| |||||||||
Sbjct: 899 gatcttcacgcaatcatcatcgctccagtggtgcaatacaagcttgagcatcacggcttg 840

                                                         
Query: 567 agcaggtgggacgacgtggaaacaggtcaccagaaacatacttaac 612
           ||| ||||| |||  |||| |||| |||||| | |||||| |||||
Sbjct: 839 agccggtggcacggtgtgg-aacaagtcacctgcaacatagttaac 795



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 274  ctcgagctcccagcttcttgacaatcttatag 305
            |||||||||| ||| |||| ||||||||||||
Sbjct: 1134 ctcgagctccaagcatcttcacaatcttatag 1103
to top
>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full
           insert sequence
          Length = 1264

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 88/106 (83%), Gaps = 1/106 (0%)
 Strand = Plus / Minus

                                                                       
Query: 507 gatcttgatgcaatcctcgtcgctccagaagtgcagaacaagcttgagcaacacggcttg 566
           |||||| | |||||| || |||||||||  |||||  ||||||||||||| |||||||||
Sbjct: 904 gatcttcacgcaatcatcatcgctccagtggtgcaatacaagcttgagcatcacggcttg 845

                                                         
Query: 567 agcaggtgggacgacgtggaaacaggtcaccagaaacatacttaac 612
           ||| ||||| |||  |||| |||| |||||| | |||||| |||||
Sbjct: 844 agccggtggcacggtgtgg-aacaagtcacctgcaacatagttaac 800



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 274  ctcgagctcccagcttcttgacaatcttatag 305
            |||||||||| ||| |||| ||||||||||||
Sbjct: 1139 ctcgagctccaagcatcttcacaatcttatag 1108
to top
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full
           insert sequence
          Length = 1262

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                       
Query: 517 caatcctcgtcgctccagaagtgcagaacaagcttgagcaacacggcttgagcaggtggg 576
           ||||||||||| ||||||  ||| || |||||||||||||  || |||||||||||||||
Sbjct: 906 caatcctcgtcactccagtggtgaagcacaagcttgagcatgacagcttgagcaggtggg 847

            
Query: 577 a 577
           |
Sbjct: 846 a 846



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 255  ggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatag 305
            ||||||||||||| |||||||||||||| ||  || || ||||||||||||
Sbjct: 1167 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatag 1117
to top
>ref|XM_477999.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1083

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 429 gatccaagcacaatgtctatgacgatgactttccctcctgctt 471
           ||||||| |||||  |||||||| ||||| |||||||||||||
Sbjct: 902 gatccaaccacaacatctatgacaatgaccttccctcctgctt 860
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                           
Query: 429      gatccaagcacaatgtctatgacgatgactttccctcctgctt 471
                ||||||| |||||  |||||||| ||||| |||||||||||||
Sbjct: 16261734 gatccaaccacaacatctatgacaatgaccttccctcctgctt 16261776



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 58      atactatctttttcaaaagaa 78
               |||||||||||||||||||||
Sbjct: 6734302 atactatctttttcaaaagaa 6734282
to top
>dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1634_H04
          Length = 151699

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 429   gatccaagcacaatgtctatgacgatgactttccctcctgctt 471
             ||||||| |||||  |||||||| ||||| |||||||||||||
Sbjct: 82172 gatccaaccacaacatctatgacaatgaccttccctcctgctt 82214
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 58       atactatctttttcaaaagaaa 79
                ||||||||||||||||||||||
Sbjct: 24792073 atactatctttttcaaaagaaa 24792052
to top
>dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBa0072A21
          Length = 158287

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 58   atactatctttttcaaaagaaa 79
            ||||||||||||||||||||||
Sbjct: 3156 atactatctttttcaaaagaaa 3135
to top
>dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0029G06
          Length = 169711

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 58     atactatctttttcaaaagaaa 79
              ||||||||||||||||||||||
Sbjct: 125754 atactatctttttcaaaagaaa 125733
to top
>ref|XM_474642.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 870

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 504 gaggatcttgatgcaatcctcgtcg 528
           ||||||||||||||| |||||||||
Sbjct: 615 gaggatcttgatgcagtcctcgtcg 591
to top
>gb|AC101777.8| Mus musculus chromosome 1, clone RP24-123J3, complete sequence
          Length = 177788

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 187    agagtgagcacacacaacaat 207
              |||||||||||||||||||||
Sbjct: 156171 agagtgagcacacacaacaat 156151
to top
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
          Length = 128418

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                         
Query: 252   tatggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactg 311
             |||||||||||||||| ||   |||||  ||| |||||||| |||||||| ||  |||||
Sbjct: 62299 tatggatagacctcaaagatgcctcgaattcctagcttcttcacaatcttgtaatcactg 62240

                  
Query: 312   aagcc 316
             |||||
Sbjct: 62239 aagcc 62235



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                         
Query: 258   tagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagcca 317
             |||||||||||||||  ||||||||| || || || |  ||||| ||| | ||||| |||
Sbjct: 14033 tagacctcaatgacacatcgagctcctagtttgttcatgatcttgtagtcgctgaatcca 14092

                              
Query: 318   gccttggtgaagatctc 334
             || || |||||||||||
Sbjct: 14093 gcattagtgaagatctc 14109



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 274  ctcgagctcccagcttcttgacaatcttatag 305
            |||||||||| ||| |||| ||||||||||||
Sbjct: 8890 ctcgagctccaagcatcttcacaatcttatag 8859



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 54/64 (84%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                        
Query: 549  cttgagcaacacggcttgagcaggtgggacgacgtggaaacaggtcaccagaaacatact 608
            |||||||| |||||||||||| ||||| |||  |||| |||| |||||| | |||||| |
Sbjct: 5446 cttgagcatcacggcttgagccggtggcacggtgtgg-aacaagtcacctgcaacatagt 5388

                
Query: 609  taac 612
            ||||
Sbjct: 5387 taac 5384
to top
>ref|XM_746399.1| Aspergillus fumigatus Af293 actin-related protein ArpA (Afu4g13390)
           partial mRNA
          Length = 1146

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 337 tccagtccttctcttcccgct 357
           |||||||||||||||||||||
Sbjct: 700 tccagtccttctcttcccgct 680
to top
>ref|XM_501466.1| Yarrowia lipolytica CLIB122, YALI0C05258g predicted mRNA
          Length = 1599

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 321 ttggtgaagatctcgttccagtccttctc 349
           ||||||| |||| ||||||||||||||||
Sbjct: 479 ttggtgatgatcacgttccagtccttctc 451
to top
>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19,
              complete sequence
          Length = 144144

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 504    gaggatcttgatgcaatcctcgtcg 528
              ||||||||||||||| |||||||||
Sbjct: 131086 gaggatcttgatgcagtcctcgtcg 131110
to top
>emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01,
             complete sequence
          Length = 186325

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 58    atactatctttttcaaaagaa 78
             |||||||||||||||||||||
Sbjct: 16567 atactatctttttcaaaagaa 16587
to top
>emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23,
              complete sequence
          Length = 149892

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 58     atactatctttttcaaaagaa 78
              |||||||||||||||||||||
Sbjct: 146597 atactatctttttcaaaagaa 146617
to top
>emb|AL606642.3|OSJN00073 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H06,
             complete sequence
          Length = 143730

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 59    tactatctttttcaaaagaaa 79
             |||||||||||||||||||||
Sbjct: 99400 tactatctttttcaaaagaaa 99420
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 58       atactatctttttcaaaagaa 78
                |||||||||||||||||||||
Sbjct: 29343551 atactatctttttcaaaagaa 29343571



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 504     gaggatcttgatgcaatcctcgtcg 528
               ||||||||||||||| |||||||||
Sbjct: 5154813 gaggatcttgatgcagtcctcgtcg 5154837



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 59     tactatctttttcaaaagaaa 79
              |||||||||||||||||||||
Sbjct: 568433 tactatctttttcaaaagaaa 568453
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 58       atactatctttttcaaaagaa 78
                |||||||||||||||||||||
Sbjct: 16908108 atactatctttttcaaaagaa 16908088



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 58       atactatctttttcaaaagaa 78
                |||||||||||||||||||||
Sbjct: 14527354 atactatctttttcaaaagaa 14527374



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 58      atactatctttttcaaaagaa 78
               |||||||||||||||||||||
Sbjct: 9857765 atactatctttttcaaaagaa 9857785
to top
>gb|AC157949.1| Mus musculus BAC clone RP23-148A16 from chromosome 9, complete sequence
          Length = 204674

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 457   ctttccctcctgctttcacgt 477
             |||||||||||||||||||||
Sbjct: 93678 ctttccctcctgctttcacgt 93698
to top
>gb|AC131072.13| Mus musculus chromosome 1, clone RP23-396F21, complete sequence
          Length = 192542

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 187    agagtgagcacacacaacaat 207
              |||||||||||||||||||||
Sbjct: 174551 agagtgagcacacacaacaat 174571
to top
>dbj|AP005719.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1130E10
          Length = 151606

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 58     atactatctttttcaaaagaa 78
              |||||||||||||||||||||
Sbjct: 127301 atactatctttttcaaaagaa 127281
to top
>dbj|AP005197.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0592C06
          Length = 160071

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 58    atactatctttttcaaaagaa 78
             |||||||||||||||||||||
Sbjct: 28436 atactatctttttcaaaagaa 28416
to top
>dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A06, full
            insert sequence
          Length = 1300

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                        
Query: 258  tagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagcca 317
            |||||||||||||||  ||||||||| || || || |  ||||| ||| | ||||| |||
Sbjct: 1184 tagacctcaatgacacatcgagctcctagtttgttcatgatcttgtagtcgctgaatcca 1125

                             
Query: 318  gccttggtgaagatctc 334
            || || |||||||||||
Sbjct: 1124 gcattagtgaagatctc 1108
to top
>gb|AC174827.3| Cavia porcellus clone CH234-477P24, complete sequence
          Length = 156330

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 211   caacatatatgcaagcatatattactttg 239
             ||||| ||||||||||||| |||||||||
Sbjct: 89651 caacacatatgcaagcataaattactttg 89623
to top
>emb|AL442118.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0201G08, complete
             sequence
          Length = 121821

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 59    tactatctttttcaaaagaaa 79
             |||||||||||||||||||||
Sbjct: 43631 tactatctttttcaaaagaaa 43651
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 58       atactatctttttcaaaagaa 78
                |||||||||||||||||||||
Sbjct: 16861341 atactatctttttcaaaagaa 16861321



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 58       atactatctttttcaaaagaa 78
                |||||||||||||||||||||
Sbjct: 14481638 atactatctttttcaaaagaa 14481658



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 58      atactatctttttcaaaagaa 78
               |||||||||||||||||||||
Sbjct: 9857650 atactatctttttcaaaagaa 9857670
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>emb|AL772414.3|CNS08C9S Oryza sativa chromosome 12, . BAC OSJNBa0040E18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 158261

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 58     atactatctttttcaaaagaa 78
              |||||||||||||||||||||
Sbjct: 133939 atactatctttttcaaaagaa 133919
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>emb|AL732639.5|CNS08C9E Oryza sativa chromosome 12, . BAC OSJNBa0038H18 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 150238

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 58    atactatctttttcaaaagaa 78
             |||||||||||||||||||||
Sbjct: 30151 atactatctttttcaaaagaa 30131
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>emb|AL954870.3|CNS08CD9 Oryza sativa chromosome 12, . BAC OSJNBb0112E17 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 140806

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 58    atactatctttttcaaaagaa 78
             |||||||||||||||||||||
Sbjct: 74705 atactatctttttcaaaagaa 74685
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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 321    ttggtgaagatctcgttccagtccttctc 349
              ||||||| |||| ||||||||||||||||
Sbjct: 668163 ttggtgatgatcacgttccagtccttctc 668191
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>gb|AC134248.3| Mus musculus BAC clone RP23-338G21 from chromosome 9, complete
            sequence
          Length = 206805

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 362  gcctctcgtcatcaccagca 381
            ||||||||||||||||||||
Sbjct: 5546 gcctctcgtcatcaccagca 5565
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>ref|XM_989083.1| PREDICTED: Mus musculus transglutaminase 4 (prostate) (Tgm4), mRNA
          Length = 5470

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 362  gcctctcgtcatcaccagca 381
            ||||||||||||||||||||
Sbjct: 1479 gcctctcgtcatcaccagca 1498
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>ref|XM_791236.1| PREDICTED: Strongylocentrotus purpuratus similar to HBS1-like protein
            (LOC591684), partial mRNA
          Length = 3640

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 279  gctcccagcttcttgacaat 298
            ||||||||||||||||||||
Sbjct: 3428 gctcccagcttcttgacaat 3409
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>emb|AL353701.15| Human DNA sequence from clone RP11-203M2 on chromosome 9 Contains the
             TTF1 gene for transcription termination factor, RNA
             polymerase 1, a novel gene and three CpG islands, complete
             sequence
          Length = 107967

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 477   tggaggaacggccttcctgc 496
             ||||||||||||||||||||
Sbjct: 96735 tggaggaacggccttcctgc 96716
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>emb|BX890589.11| Zebrafish DNA sequence from clone DKEY-14I16 in linkage group 5, complete
              sequence
          Length = 204925

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 455    gactttccctcctgctttca 474
              ||||||||||||||||||||
Sbjct: 161106 gactttccctcctgctttca 161087
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>gb|AC011291.8| Homo sapiens BAC clone RP11-67G7 from 2, complete sequence
          Length = 150214

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 32    tagaatatgaaaagcagtctaact 55
             |||||||||| |||||||||||||
Sbjct: 57275 tagaatatgataagcagtctaact 57298
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>emb|BX511027.20| Zebrafish DNA sequence from clone CH211-281P14 in linkage group 14,
             complete sequence
          Length = 198761

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 528   gctccagaagtgcagaacaa 547
             ||||||||||||||||||||
Sbjct: 96219 gctccagaagtgcagaacaa 96200
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>dbj|AK035279.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
            enriched library, clone:9530008N10 product:similar to
            DORSAL PROSTATE PROTEIN-GLUTAMINE
            GAMMA-GLUTAMYLTRANSFERASE (EC 2.3.2.13) (DORSAL PROSTATE
            TRANSGLUTAMINASE) (DORSAL PROTEIN 1) (DP1) [Rattus
            norvegicus], full insert sequence
          Length = 2768

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 362  gcctctcgtcatcaccagca 381
            ||||||||||||||||||||
Sbjct: 1831 gcctctcgtcatcaccagca 1850
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>gb|AC017087.5|AC017087 Homo sapiens BAC clone RP11-495H13 from 4, complete sequence
          Length = 171745

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    acatatatgcaagcatatat 232
              ||||||||||||||||||||
Sbjct: 144261 acatatatgcaagcatatat 144280
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>emb|BX005328.9| Zebrafish DNA sequence from clone DKEY-63D15 in linkage group 8, complete
              sequence
          Length = 272840

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    acaatccacaacatatatgc 222
              ||||||||||||||||||||
Sbjct: 195158 acaatccacaacatatatgc 195139
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>gb|AC007132.3| Homo sapiens BAC clone RP11-444A22 from 2, complete sequence
          Length = 157779

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 65   ctttttcaaaagaaagtttg 84
            ||||||||||||||||||||
Sbjct: 3933 ctttttcaaaagaaagtttg 3914
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>gb|AC087798.10| Homo sapiens 12 BAC RP11-788H18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 160095

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   atatatgcaagcatatatta 234
             ||||||||||||||||||||
Sbjct: 70170 atatatgcaagcatatatta 70151
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>gb|AF486627.1| Mus musculus experimental autoimmune prostatitis antigen 1 (Eapa1)
            mRNA, complete cds
          Length = 2303

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 362  gcctctcgtcatcaccagca 381
            ||||||||||||||||||||
Sbjct: 1829 gcctctcgtcatcaccagca 1848
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>dbj|AP001458.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-831H9, complete
             sequence
          Length = 177433

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   agccactgaagccagccttg 323
             ||||||||||||||||||||
Sbjct: 58859 agccactgaagccagccttg 58840
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>gb|AC133650.4| Mus musculus BAC clone RP23-453B15 from 9, complete sequence
          Length = 170607

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    gcctctcgtcatcaccagca 381
              ||||||||||||||||||||
Sbjct: 127119 gcctctcgtcatcaccagca 127138
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>ref|NM_177911.2| Mus musculus transglutaminase 4 (prostate) (Tgm4), mRNA
          Length = 2768

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 362  gcctctcgtcatcaccagca 381
            ||||||||||||||||||||
Sbjct: 1831 gcctctcgtcatcaccagca 1850
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>emb|AL672285.8| Mouse DNA sequence from clone RP23-45G5 on chromosome X, complete
              sequence
          Length = 164443

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    acatatatgcaagcatatat 232
              ||||||||||||||||||||
Sbjct: 129278 acatatatgcaagcatatat 129297
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>emb|AL805949.4| Mouse DNA sequence from clone RP23-424K9 on chromosome 4, complete
             sequence
          Length = 193704

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   atatatgcaagcatatatta 234
             ||||||||||||||||||||
Sbjct: 56680 atatatgcaagcatatatta 56699
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>emb|AL645736.9| Mouse DNA sequence from clone RP23-474J7 on chromosome 2, complete
             sequence
          Length = 98571

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 306   ccactgaagccagccttggtgaag 329
             ||||||||||||| ||||||||||
Sbjct: 32627 ccactgaagccagacttggtgaag 32650


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,833,391
Number of Sequences: 3902068
Number of extensions: 5833391
Number of successful extensions: 135534
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134690
Number of HSP's gapped (non-prelim): 838
length of query: 646
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 623
effective length of database: 17,143,297,704
effective search space: 10680274469592
effective search space used: 10680274469592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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