>BXDC2_XENLA (Q8UVY2) Brix domain-containing protein 2 (Ribosome biogenesis|
           protein Brix) (Bx24)
          Length = 339

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 35/65 (53%), Positives = 39/65 (60%)
 Frame = -3

Query: 495 FRNYQISVPHNEIDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVSPN 316
           FRNYQI               +   LVE+GPRF LN IKIF GSFGGPTL+ENP Y SPN
Sbjct: 210 FRNYQIIE-------------EDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPN 256

Query: 315 QIRAL 301
             R +
Sbjct: 257 MHRRM 261

>BXDC2_MOUSE (Q9DCA5) Brix domain-containing protein 2 (Ribosome biogenesis|
           protein Brix)
          Length = 276

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 34/63 (53%), Positives = 38/63 (60%)
 Frame = -3

Query: 495 FRNYQISVPHNEIDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVSPN 316
           FRN+QI               +   LVE+GPRF LN IKIF GSFGGPTL+ENP Y SPN
Sbjct: 140 FRNFQIIE-------------EDAALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPN 186

Query: 315 QIR 307
             R
Sbjct: 187 MHR 189

>BXDC2_HUMAN (Q8TDN6) Brix domain-containing protein 2 (Ribosome biogenesis|
           protein Brix)
          Length = 353

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 34/63 (53%), Positives = 38/63 (60%)
 Frame = -3

Query: 495 FRNYQISVPHNEIDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVSPN 316
           FRN+QI               +   LVE+GPRF LN IKIF GSFGGPTL+ENP Y SPN
Sbjct: 217 FRNFQIIE-------------EDAALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPN 263

Query: 315 QIR 307
             R
Sbjct: 264 MHR 266

>BRX1_YEAST (Q08235) Ribosome biogenesis protein BRX1|
          Length = 291

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
 Frame = -3

Query: 492 RNYQISVPHNEIDKVD-KGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVSPN 316
           R Y+IS  H+  +K + + G + ++LVE+GPRF +  I I  GSFGGP ++EN  YVSPN
Sbjct: 189 RTYEIS--HSTKNKEEYEDGEEDISLVEIGPRFVMTVILILEGSFGGPKIYENKQYVSPN 246

Query: 315 QIRALEXXXXXXXXXXXXXXXXXXKMHEMENTLEPDEFAD 196
            +RA                    K+   EN L  D  ++
Sbjct: 247 VVRAQIKQQAAEEAKSRAEAAVERKIKRRENVLAADPLSN 286

>BXDC2_DROME (Q9VZE6) Brix domain-containing protein 2 homolog (Ribosome|
           biogenesis protein Brix homolog)
          Length = 359

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 31/63 (49%), Positives = 40/63 (63%)
 Frame = -3

Query: 495 FRNYQISVPHNEIDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVSPN 316
           FRN+QI          + GGL      EVGPR+ +NP+KIF GSF G T++ENP YVSP+
Sbjct: 209 FRNFQILS--------EDGGLS-----EVGPRYVMNPVKIFDGSFTGKTIWENPDYVSPS 255

Query: 315 QIR 307
           + R
Sbjct: 256 KQR 258

>BRX1_SCHPO (Q9HGL6) Ribosome biogenesis protein Brix homolog|
          Length = 295

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 28/64 (43%), Positives = 39/64 (60%)
 Frame = -3

Query: 495 FRNYQISVPHNEIDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVSPN 316
           FRNY+I       +  DK   D +TL+E+GPRF +  I I  GSFGGP +++N  +VS  
Sbjct: 200 FRNYEIR------ENEDKSK-DPVTLIEIGPRFVMTIINILEGSFGGPVIYKNDTFVSST 252

Query: 315 QIRA 304
            +RA
Sbjct: 253 MVRA 256

>YM63_CAEEL (P34524) Hypothetical protein K12H4.3 in chromosome III|
          Length = 352

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 30/63 (47%), Positives = 38/63 (60%)
 Frame = -3

Query: 495 FRNYQISVPHNEIDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVSPN 316
           FRN+QI         VD    + + L EVGPRF L  +++F GSF G  L++NP YVSPN
Sbjct: 221 FRNFQI---------VD----ESLQLQEVGPRFVLEMVRLFAGSFEGAVLYDNPNYVSPN 267

Query: 315 QIR 307
            IR
Sbjct: 268 VIR 270

>YDD3_SCHPO (O14206) Hypothetical protein C1B9.03c in chromosome I|
          Length = 389

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 420 LVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVSPNQIR 307
           L+E+GPR  L  IKI   + GG  L+ +  + S  +I+
Sbjct: 289 LIEIGPRMTLELIKITEDAMGGKVLYHSHVHKSKEEIK 326

>SFSA_RHIME (O87322) Sugar fermentation stimulation protein homolog|
          Length = 239

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 140 MNSIGELMHAGHRQALNFAFLYDNQSIFSLCKTTDSVLAR 21
           +  +G+++ AGHR  + +     + S F +C+  D V AR
Sbjct: 160 LEELGDMVEAGHRAIMLYLIQRGDCSRFRICRELDPVYAR 199

>RHSC_ECOLI (P16918) Protein rhsC precursor|
          Length = 1397

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -3

Query: 471  PHNEIDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSF--GGPTLFENPFY 328
            P N I  +D  GL+ +         C+ P+   GG+    GP ++ NPFY
Sbjct: 1235 PLNPISNIDPLGLETLK--------CIKPLHSMGGTGERSGPDIWGNPFY 1276

>OMPX_ENTCL (P25253) Outer membrane protein X precursor|
          Length = 172

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 11  RYGYEQERNPLFYIVKICFDCHTRTQNSVLGDGQHASV 124
           +Y YEQ+ NPL  I    +    RT+N     GQ+  +
Sbjct: 50  KYRYEQDNNPLGVIGSFTYTEKDRTENGSYNKGQYYGI 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,243,509
Number of Sequences: 219361
Number of extensions: 1102737
Number of successful extensions: 2820
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2819
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)