ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18m12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190081.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 363 Score = 408 bits (206), Expect = e-110 Identities = 299/330 (90%) Strand = Plus / Minus Query: 232 acttcttgaggaactggaggccgttggcctgggagtagcgctccatgaagcgcatgaatc 291 ||||||||| ||||||||||||||||||||||||||| | ||||||||| |||||||| | Sbjct: 361 acttcttgacgaactggaggccgttggcctgggagtacctctccatgaatcgcatgaacc 302 Query: 292 ggtcccagtccctgggggtgcgcatcacgtacttggcctccacggccgccggcttgccgt 351 |||||| |||| || |||||||| |||||||||||||| | | |||||||||||||| Sbjct: 301 tgtcccactcccgcggcgtgcgcatgacgtacttggcctcgatgagcgccggcttgccgt 242 Query: 352 tgacgaacttggcgctgacgtccacggagctcagcgtgccctcctcgtcgaccatgtaga 411 ||||||||||||||||||||||||| || ||| |||||| ||||||| |||||||| Sbjct: 241 tgacgaacttggcgctgacgtccaccgactggagcacgccctcgtcgtcgatcatgtaga 182 Query: 412 atccggtgatgtcgcccagctccgccgacgagtcgaacaccgacggctgctcgaaggtga 471 | |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| Sbjct: 181 agccggtgatgtcgccgagctctgccgacgagtcgaacaccgacggctggtcgaaggtga 122 Query: 472 agatggccaccccgttgctgccgtcccgggacttggtcagccgcacgtccgggatcgtct 531 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 agatggccacgccgttggtgccgtcccgggacttggtcagccgcacgtccgggatcgtct 62 Query: 532 gctcgtccgtgccctggatgaactggatcg 561 ||||||| |||||||||||||||||||||| Sbjct: 61 gctcgtcggtgccctggatgaactggatcg 32
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 408 bits (206), Expect = e-110 Identities = 299/330 (90%) Strand = Plus / Minus Query: 232 acttcttgaggaactggaggccgttggcctgggagtagcgctccatgaagcgcatgaatc 291 ||||||||| ||||||||||||||||||||||||||| | ||||||||| |||||||| | Sbjct: 41180919 acttcttgacgaactggaggccgttggcctgggagtacctctccatgaatcgcatgaacc 41180860 Query: 292 ggtcccagtccctgggggtgcgcatcacgtacttggcctccacggccgccggcttgccgt 351 |||||| |||| || |||||||| |||||||||||||| | | |||||||||||||| Sbjct: 41180859 tgtcccactcccgcggcgtgcgcatgacgtacttggcctcgatgagcgccggcttgccgt 41180800 Query: 352 tgacgaacttggcgctgacgtccacggagctcagcgtgccctcctcgtcgaccatgtaga 411 ||||||||||||||||||||||||| || ||| |||||| ||||||| |||||||| Sbjct: 41180799 tgacgaacttggcgctgacgtccaccgactggagcacgccctcgtcgtcgatcatgtaga 41180740 Query: 412 atccggtgatgtcgcccagctccgccgacgagtcgaacaccgacggctgctcgaaggtga 471 | |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| Sbjct: 41180739 agccggtgatgtcgccgagctctgccgacgagtcgaacaccgacggctggtcgaaggtga 41180680 Query: 472 agatggccaccccgttgctgccgtcccgggacttggtcagccgcacgtccgggatcgtct 531 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 41180679 agatggccacgccgttggtgccgtcccgggacttggtcagccgcacgtccgggatcgtct 41180620 Query: 532 gctcgtccgtgccctggatgaactggatcg 561 ||||||| |||||||||||||||||||||| Sbjct: 41180619 gctcgtcggtgccctggatgaactggatcg 41180590
>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504E02 Length = 137468 Score = 408 bits (206), Expect = e-110 Identities = 299/330 (90%) Strand = Plus / Minus Query: 232 acttcttgaggaactggaggccgttggcctgggagtagcgctccatgaagcgcatgaatc 291 ||||||||| ||||||||||||||||||||||||||| | ||||||||| |||||||| | Sbjct: 77974 acttcttgacgaactggaggccgttggcctgggagtacctctccatgaatcgcatgaacc 77915 Query: 292 ggtcccagtccctgggggtgcgcatcacgtacttggcctccacggccgccggcttgccgt 351 |||||| |||| || |||||||| |||||||||||||| | | |||||||||||||| Sbjct: 77914 tgtcccactcccgcggcgtgcgcatgacgtacttggcctcgatgagcgccggcttgccgt 77855 Query: 352 tgacgaacttggcgctgacgtccacggagctcagcgtgccctcctcgtcgaccatgtaga 411 ||||||||||||||||||||||||| || ||| |||||| ||||||| |||||||| Sbjct: 77854 tgacgaacttggcgctgacgtccaccgactggagcacgccctcgtcgtcgatcatgtaga 77795 Query: 412 atccggtgatgtcgcccagctccgccgacgagtcgaacaccgacggctgctcgaaggtga 471 | |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| Sbjct: 77794 agccggtgatgtcgccgagctctgccgacgagtcgaacaccgacggctggtcgaaggtga 77735 Query: 472 agatggccaccccgttgctgccgtcccgggacttggtcagccgcacgtccgggatcgtct 531 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 77734 agatggccacgccgttggtgccgtcccgggacttggtcagccgcacgtccgggatcgtct 77675 Query: 532 gctcgtccgtgccctggatgaactggatcg 561 ||||||| |||||||||||||||||||||| Sbjct: 77674 gctcgtcggtgccctggatgaactggatcg 77645
>gb|AY109937.1| Zea mays CL24596_1 mRNA sequence Length = 795 Score = 373 bits (188), Expect = e-100 Identities = 287/320 (89%) Strand = Plus / Plus Query: 242 gaactggaggccgttggcctgggagtagcgctccatgaagcgcatgaatcggtcccagtc 301 ||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| || Sbjct: 385 gaactggaggccgttggcccgggagtaccgctccatgaagcgcatgaagcggtcccactc 444 Query: 302 cctgggggtgcgcatcacgtacttggcctccacggccgccggcttgccgttgacgaactt 361 || ||| ||||||||||||||||||||||| | ||||||||||||||| |||||||| Sbjct: 445 ccggggcgtgcgcatcacgtacttggcctcgatccgcgccggcttgccgttcacgaactt 504 Query: 362 ggcgctgacgtccacggagctcagcgtgccctcctcgtcgaccatgtagaatccggtgat 421 |||||| ||||||||||| |||| |||||| ||||| |||||||| || || | ||| Sbjct: 505 ggcgctcacgtccacggactgcagcacgccctcgtcgtccaccatgtaaaagcccgggat 564 Query: 422 gtcgcccagctccgccgacgagtcgaacaccgacggctgctcgaaggtgaagatggccac 481 |||||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||| Sbjct: 565 gtcgcccagctccgccgacgagtcgaacaccgacggacgctcgaacgcgaagacggccac 624 Query: 482 cccgttgctgccgtcccgggacttggtcagccgcacgtccgggatcgtctgctcgtccgt 541 |||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 625 gccgttggtgccgtcgcgggacttggtcagccgcacgtccgggaccgtctgctcgtccgt 684 Query: 542 gccctggatgaactggatcg 561 |||||||||||||||||||| Sbjct: 685 gccctggatgaactggatcg 704
>gb|AF366557.1| Oryza sativa saline responsive OSSRII protein mRNA, partial cds Length = 294 Score = 311 bits (157), Expect = 2e-81 Identities = 259/293 (88%) Strand = Plus / Minus Query: 233 cttcttgaggaactggaggccgttggcctgggagtagcgctccatgaagcgcatgaatcg 292 |||||||| |||||||||| |||||||||||||||| | ||||||||| |||||||| | Sbjct: 294 cttcttgacgaactggaggacgttggcctgggagtacctctccatgaatcgcatgaacct 235 Query: 293 gtcccagtccctgggggtgcgcatcacgtacttggcctccacggccgccggcttgccgtt 352 |||||| |||| || |||||||| |||||||||||||| | | ||||||||||||||| Sbjct: 234 gtcccactcccgcggcgtgcgcatgacgtacttggcctcgatgagcgccggcttgccgtt 175 Query: 353 gacgaacttggcgctgacgtccacggagctcagcgtgccctcctcgtcgaccatgtagaa 412 |||||||||||||||||||||||| || ||| |||||| ||||||| ||||||||| Sbjct: 174 gacgaacttggcgctgacgtccaccgactggagcacgccctcgtcgtcgatcatgtagaa 115 Query: 413 tccggtgatgtcgcccagctccgccgacgagtcgaacaccgacggctgctcgaaggtgaa 472 ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 114 gccggtgatgtcgcccagcttcgccgacgagtcgaacaccgacggctggtcgaaggtgaa 55 Query: 473 gatggccaccccgttgctgccgtcccgggacttggtcagccgcacgtccggga 525 ||||||||| || || ||||||||| |||||| ||||||||||||||||||| Sbjct: 54 gatggccacgccctttgtgccgtccccggactttgtcagccgcacgtccggga 2
>emb|AL450331.13| Mouse DNA sequence from clone RP23-41L21 on chromosome 13 Contains a transcription elongation factor B (SIII) 1 (15kD, elongin C) (Tceb1) pseudogene, a serine (or cysteine) proteinase inhibitor (Serpin) pseudogene, the gene for serine (or cysteine) proteinase inhibitor (Serpin, Spi) family member NK21L1 (1600002F03Rik), the gene for a novel serine (or cysteine) proteinase inhibitor (Serpin, Spi) family member and a CpG island, complete sequence Length = 140944 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 40 tgaacagggtacgcagccacagagcac 66 ||||||||||| ||||||||||||||| Sbjct: 50596 tgaacagggtaagcagccacagagcac 50570
>gb|AC161235.6| Mus musculus chromosome 3, clone RP24-86C19, complete sequence Length = 206729 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Plus Query: 139 aaaaacatgtagaagaagaataagaa 164 |||||||||||||||||||| ||||| Sbjct: 157559 aaaaacatgtagaagaagaagaagaa 157584
>ref|NM_201208.1| Danio rerio zgc:64102 (zgc:64102), mRNA Length = 1570 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 460 gctcgaaggtgaagatggccac 481 |||||||||||||||||||||| Sbjct: 512 gctcgaaggtgaagatggccac 491
>emb|AL356583.28| Human DNA sequence from clone RP11-690C23 on chromosome 1 Contains the 5' end of the SMYD3 gene for SET and MYND domain containing 3, an ubiquitin specific protease 6 (Tre-2 oncogene) (USP6) pseudogene, a novel gene, a pseudogene similar to part of tumor necrosis factor receptor superfamily member 13B (TNFRSF13B), a pseudogene similar to part of carboxypeptidase D (CPD), the TFB2M gene for mitochondrial transcription factor B2, the 5' end of the gene for a novel protein (FLJ32001, DKFZp451A152, DKFZp451B077, FLJ00215) and two CpG islands, complete sequence Length = 207486 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Plus Query: 122 aatccatccatgaaaccaaaaa 143 |||||||||||||||||||||| Sbjct: 171305 aatccatccatgaaaccaaaaa 171326
>gb|BC053253.1| Danio rerio zgc:64102, mRNA (cDNA clone MGC:64102 IMAGE:6795089), complete cds Length = 1570 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 460 gctcgaaggtgaagatggccac 481 |||||||||||||||||||||| Sbjct: 512 gctcgaaggtgaagatggccac 491
>emb|BX682531.11| Zebrafish DNA sequence from clone CH211-12C17 in linkage group 23, complete sequence Length = 171113 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 460 gctcgaaggtgaagatggccac 481 |||||||||||||||||||||| Sbjct: 50315 gctcgaaggtgaagatggccac 50294
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 336 gccgccggcttgccgttgacga 357 |||||||||||||||||||||| Sbjct: 3178827 gccgccggcttgccgttgacga 3178806
>gb|AC104908.10| Mus musculus chromosome 3, clone RP23-325M18, complete sequence Length = 231792 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Minus Query: 139 aaaaacatgtagaagaagaataagaa 164 |||||||||||||||||||| ||||| Sbjct: 182713 aaaaacatgtagaagaagaagaagaa 182688
>gb|AC119415.13| Medicago truncatula clone mth2-27n2, complete sequence Length = 139330 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 aactcaatgcagctagttttc 114 ||||||||||||||||||||| Sbjct: 69720 aactcaatgcagctagttttc 69740
>emb|AL135787.13| Human DNA sequence from clone RP11-16L21 on chromosome 9 Contains the 3' end of a variant of the gene for KIAA1962 protein similar to zinc finger protein HIT-10, the LTB4DH gene for leukotriene B4 12-hydroxydehydrogenase (MGC34943), the gene for KIAA0563-related gene (LOC286331), the GNG10 gene for guanine nucleotide binding protein (G protein), gamma 10, a novel gene, the 3' end of a novel gene and six CpG islands, complete sequence Length = 161448 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 290 tcggtcccagtccctgggggtgcgc 314 |||||||| |||||||||||||||| Sbjct: 104801 tcggtcccggtccctgggggtgcgc 104825
>gb|AC126789.20| Medicago truncatula clone mth2-36n23, complete sequence Length = 126875 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 aactcaatgcagctagttttc 114 ||||||||||||||||||||| Sbjct: 23880 aactcaatgcagctagttttc 23900
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 266 gtagcgctccatgaagcgcatgaatcggtccca 298 |||||||||||| |||||||| || |||||||| Sbjct: 49932 gtagcgctccataaagcgcataaaacggtccca 49964
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 341 cggcttgccgttgacgaacttggcg 365 ||||| ||||||||||||||||||| Sbjct: 1744147 cggctggccgttgacgaacttggcg 1744171
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 330 tccacggccgccggcttgccgttga 354 |||| |||||||||||||||||||| Sbjct: 3086892 tccatggccgccggcttgccgttga 3086868
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 gagtagcgctccatgaagcgc 284 ||||||||||||||||||||| Sbjct: 3054620 gagtagcgctccatgaagcgc 3054640
>dbj|AP005638.2| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-61B13, complete sequence Length = 83280 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 catgtagaagaagaataagaa 164 ||||||||||||||||||||| Sbjct: 47054 catgtagaagaagaataagaa 47074
>dbj|D82937.1|SYCSDS2 Synechocystis sp. DNA for 13 kDa protein of photosystem II, complete cds Length = 754 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 266 gtagcgctccatgaagcgcatgaatcggtccca 298 |||||||||||| |||||||| || |||||||| Sbjct: 353 gtagcgctccataaagcgcataaaacggtccca 321
>dbj|AP004606.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-138O22, complete sequences Length = 173185 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 catgtagaagaagaataagaa 164 ||||||||||||||||||||| Sbjct: 85 catgtagaagaagaataagaa 105
>ref|XM_462952.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3291 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 575 catcgccaccgccaccactg 594 |||||||||||||||||||| Sbjct: 2149 catcgccaccgccaccactg 2130
>gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete sequence Length = 151269 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 575 catcgccaccgccaccactg 594 |||||||||||||||||||| Sbjct: 74529 catcgccaccgccaccactg 74548
>gb|BC077590.1| Xenopus laevis MGC83946 protein, mRNA (cDNA clone MGC:83946 IMAGE:6861971), complete cds Length = 2701 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 134 aaaccaaaaacatgtagaagaagaataa 161 |||| ||||||||||||| ||||||||| Sbjct: 2644 aaactaaaaacatgtagatgaagaataa 2671
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 575 catcgccaccgccaccactg 594 |||||||||||||||||||| Sbjct: 20156445 catcgccaccgccaccactg 20156464
>ref|XM_802900.1| Trypanosoma cruzi strain CL Brener UDP-Gal or UDP-GlcNAc-dependent glycosyltransferase (Tc00.1047053508193.60) partial mRNA Length = 1185 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 585 gccaccactgacgatgatga 604 |||||||||||||||||||| Sbjct: 154 gccaccactgacgatgatga 173
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 cggccgccggcttgccgttg 353 |||||||||||||||||||| Sbjct: 3416335 cggccgccggcttgccgttg 3416354
>emb|AL353769.19| Human DNA sequence from clone RP11-188L14 on chromosome 10 Contains a CpG island, complete sequence Length = 79509 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 gaaaccaaaaacatgtagaa 152 |||||||||||||||||||| Sbjct: 33605 gaaaccaaaaacatgtagaa 33586
>emb|AL031123.14|HS80N2 Human DNA sequence from clone RP1-80N2 on chromosome 6p24.1-25.3 Contains the gene for MD-1,RP105-associated, part of a putative novel gene and three putative CpG islands, complete sequence Length = 193731 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tctgtcaggaatccatccat 132 |||||||||||||||||||| Sbjct: 134530 tctgtcaggaatccatccat 134511
>emb|AL590522.7| Mouse DNA sequence from clone RP23-117C5 on chromosome 13 Contains the Prlpc2, Prlpe and Prlpf genes for prolactin-like proteins C2 (1600019F10RIK, Prlpc beta), E (Prlpg) and F (Plp-f), and genes 1600032B14RIK, 1600017L04RIK (3830403L08RIK) and 1600014J19RIK for novel proteins similar to prolactin, complete sequence Length = 211776 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 aaaaacatgtagaagaagaa 158 |||||||||||||||||||| Sbjct: 109407 aaaaacatgtagaagaagaa 109388
>gb|AE011925.1| Xanthomonas axonopodis pv. citri str. 306, section 303 of 469 of the complete genome Length = 12478 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 cggccgccggcttgccgttg 353 |||||||||||||||||||| Sbjct: 10293 cggccgccggcttgccgttg 10312
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 575 catcgccaccgccaccactgacga 598 |||||||||| ||||||||||||| Sbjct: 23397268 catcgccaccaccaccactgacga 23397245
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 575 catcgccaccgccaccactg 594 |||||||||||||||||||| Sbjct: 20149472 catcgccaccgccaccactg 20149491
>gb|AY228175.1|AY228174S2 Streptomyces murayamaensis putative arylamine N-acetyltransferase, putative hydrolase, putative transmembrane efflux protein, putative transcriptional regulator, putative ribonuclease HII, putative ATP-dependent DNA helicase, putative bifunctional enzyme deaminase/reductase genes, complete cds; kinamycin biosynthetic gene cluster, partial sequence and unknown genes Length = 34564 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 650 caccgtgacgccgctgaagg 669 |||||||||||||||||||| Sbjct: 31599 caccgtgacgccgctgaagg 31618
>dbj|AP004182.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1199_H01 Length = 107252 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 575 catcgccaccgccaccactgacga 598 |||||||||| ||||||||||||| Sbjct: 78492 catcgccaccaccaccactgacga 78469
>dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453G03 Length = 144480 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 575 catcgccaccgccaccactgacga 598 |||||||||| ||||||||||||| Sbjct: 17165 catcgccaccaccaccactgacga 17142
>dbj|AB104882.1| Serratia marcescens sdeX, sdeY genes for multidrug efflux pump SdeX, multidrug efflux pump SdeY, complete cds Length = 4503 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 tggccaccccgttgctgccg 494 |||||||||||||||||||| Sbjct: 1585 tggccaccccgttgctgccg 1604
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 cgagtcgaacaccgacggct 459 |||||||||||||||||||| Sbjct: 5085202 cgagtcgaacaccgacggct 5085183
>dbj|AP000793.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-812L3, complete sequences Length = 169152 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 gaatccatccatgaaaccaaaaac 144 ||||||||||||| |||||||||| Sbjct: 48283 gaatccatccatgtaaccaaaaac 48260
>dbj|AP004627.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT01J10b, TM0090b, complete sequence Length = 39905 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 578 cgccaccgccaccactgacg 597 |||||||||||||||||||| Sbjct: 7446 cgccaccgccaccactgacg 7465 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,625,425 Number of Sequences: 3902068 Number of extensions: 4625425 Number of successful extensions: 95159 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94322 Number of HSP's gapped (non-prelim): 836 length of query: 704 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 681 effective length of database: 17,143,297,704 effective search space: 11674585736424 effective search space used: 11674585736424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
