ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18m10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP005930.3| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
2dbj|AK121119.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
3dbj|AK068222.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
4emb|BX247948.4| Zebrafish DNA sequence from clone DKEY-34E4 in l... 48 0.030
5emb|BX248103.7| Zebrafish DNA sequence from clone CH211-226C13 i... 48 0.030
6emb|AL929590.15| Zebrafish DNA sequence from clone DKEY-46K8 in ... 48 0.030
7dbj|BS000007.1| Pan troglodytes chromosome 22 clone:PTB-005B20, ... 44 0.47
8emb|BX649502.4| Zebrafish DNA sequence from clone DKEY-204F11 in... 44 0.47
9gb|AC006556.3|AC006556 Homo sapiens, clone hRPK.37_A_1, complete... 44 0.47
10dbj|AP001660.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 44 0.47
11emb|AL078615.2|HS98L15 Homo sapiens chromosome 21 PAC RPCIP704L1... 44 0.47
12emb|BX855606.3| Mouse DNA sequence from clone RP24-136M10 on chr... 42 1.9
13gb|AC104781.4| Homo sapiens BAC clone RP11-30C22 from 2, complet... 42 1.9
14emb|AJ316276.1|CTA316276 Caulerpa taxifolia 18S rRNA gene (parti... 42 1.9
15gb|AC165250.2| Mus musculus BAC clone RP24-209D3 from chromosome... 42 1.9
16gb|AC113474.18| Mus musculus chromosome 5, clone RP23-297J17, co... 40 7.3
17gb|AC145477.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
18gb|AC135239.3| Mus musculus BAC clone RP23-324D2 from chromosome... 40 7.3
19gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
20emb|CT030514.1| Xenopus tropicalis finished cDNA, clone TTpA022d06 40 7.3
21gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 7.3
22gb|AC100953.12| Mus musculus chromosome 5, clone RP23-73P16, com... 40 7.3
23gb|AC154352.2| Mus musculus BAC clone RP24-545J11 from chromosom... 40 7.3
24emb|AL590132.7| Human DNA sequence from clone RP11-255G4 on chro... 40 7.3
25emb|AL359262.9| Human DNA sequence from clone RP11-334O13 on chr... 40 7.3
26emb|AL162717.10| Human DNA sequence from clone RP11-123H22 on ch... 40 7.3
27emb|AL136455.6| Human DNA sequence from clone RP11-97C18 on chro... 40 7.3
28gb|AC163212.3| Mus musculus chromosome 3, clone RP24-102O2, comp... 40 7.3
29gb|AC108078.3| Homo sapiens BAC clone RP11-790I12 from 4, comple... 40 7.3
30gb|AC104041.5| Homo sapiens chromosome 15, clone CTD-2034I4, com... 40 7.3
31gb|AC091214.20| Homo sapiens 12q BAC RP11-13F9 (Roswell Park Can... 40 7.3
32dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
33gb|AC097536.3| Homo sapiens BAC clone RP11-803N5 from 2, complet... 40 7.3
34ref|NM_001011408.1| Xenopus tropicalis hypothetical LOC496885 (L... 40 7.3
35gb|AF135419.1|AF135419 sHomo sapiens 4q13 genomic sequence 40 7.3
36emb|BX679673.6| Mouse DNA sequence from clone RP23-252K15 on chr... 40 7.3
37emb|BX004989.8| Zebrafish DNA sequence from clone CH211-167M4 in... 40 7.3
38dbj|AK069902.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
39emb|AL359950.4|CNS05TF2 Human chromosome 14 DNA sequence BAC R-5... 40 7.3
40emb|BX663521.10| Zebrafish DNA sequence from clone DKEYP-50F5 in... 40 7.3
41emb|BX005458.19| Zebrafish DNA sequence from clone CH211-173L10 ... 40 7.3
42dbj|AP001835.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 7.3
43dbj|AP000755.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 7.3
44gb|BC088778.1| Xenopus tropicalis hypothetical LOC496885, mRNA (... 40 7.3
45emb|AL773540.18| Mouse DNA sequence from clone RP23-177L19 on ch... 40 7.3
46emb|AL837507.5| Mouse DNA sequence from clone RP23-267B2 on chro... 40 7.3 
>dbj|AP005930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0502B12
          Length = 197160

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 72/79 (91%), Gaps = 2/79 (2%)
 Strand = Plus / Plus

                                                                          
Query: 191    aacctgttgctattgcaaagaacatttttctacatcacaactgtcagctgcaagggtcaa 250
              |||||||||||||||||||||||| |||||||||||||||||||||  | ||| ||||||
Sbjct: 167482 aacctgttgctattgcaaagaaca-ttttctacatcacaactgtcaattccaa-ggtcaa 167539

                                 
Query: 251    attaatgagatatccacat 269
               | ||||||||||||||||
Sbjct: 167540 ttaaatgagatatccacat 167558
to top
>dbj|AK121119.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074F05, full
            insert sequence
          Length = 5217

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 72/79 (91%), Gaps = 2/79 (2%)
 Strand = Plus / Minus

                                                                        
Query: 191  aacctgttgctattgcaaagaacatttttctacatcacaactgtcagctgcaagggtcaa 250
            |||||||||||||||||||||||| |||||||||||||||||||||  | ||| ||||||
Sbjct: 4932 aacctgttgctattgcaaagaaca-ttttctacatcacaactgtcaattccaa-ggtcaa 4875

                               
Query: 251  attaatgagatatccacat 269
             | ||||||||||||||||
Sbjct: 4874 ttaaatgagatatccacat 4856
to top
>dbj|AK068222.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013138E23, full
            insert sequence
          Length = 3875

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 72/79 (91%), Gaps = 2/79 (2%)
 Strand = Plus / Minus

                                                                        
Query: 191  aacctgttgctattgcaaagaacatttttctacatcacaactgtcagctgcaagggtcaa 250
            |||||||||||||||||||||||| |||||||||||||||||||||  | ||| ||||||
Sbjct: 3511 aacctgttgctattgcaaagaaca-ttttctacatcacaactgtcaattccaa-ggtcaa 3454

                               
Query: 251  attaatgagatatccacat 269
             | ||||||||||||||||
Sbjct: 3453 ttaaatgagatatccacat 3435
to top
>emb|BX247948.4| Zebrafish DNA sequence from clone DKEY-34E4 in linkage group 5,
             complete sequence
          Length = 131707

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 465   agagtttcgtcatcagattccttcttgc 492
             ||||||| ||||||||||||||||||||
Sbjct: 79931 agagttttgtcatcagattccttcttgc 79904
to top
>emb|BX248103.7| Zebrafish DNA sequence from clone CH211-226C13 in linkage group 5,
             complete sequence
          Length = 66173

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 465   agagtttcgtcatcagattccttcttgc 492
             ||||||| ||||||||||||||||||||
Sbjct: 59339 agagttttgtcatcagattccttcttgc 59312
to top
>emb|AL929590.15| Zebrafish DNA sequence from clone DKEY-46K8 in linkage group 5,
            complete sequence
          Length = 163866

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 465  agagtttcgtcatcagattccttcttgc 492
            ||||||| ||||||||||||||||||||
Sbjct: 6883 agagttttgtcatcagattccttcttgc 6910
to top
>dbj|BS000007.1| Pan troglodytes chromosome 22 clone:PTB-005B20, map 22, complete
             sequences
          Length = 123600

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 193   cctgttgctattgcaaagaaca 214
             ||||||||||||||||||||||
Sbjct: 89111 cctgttgctattgcaaagaaca 89132
to top
>emb|BX649502.4| Zebrafish DNA sequence from clone DKEY-204F11 in linkage group 3,
             complete sequence
          Length = 247387

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 406   tcagaaaagtgaaaatatatca 427
             ||||||||||||||||||||||
Sbjct: 92014 tcagaaaagtgaaaatatatca 92035
to top
>gb|AC006556.3|AC006556 Homo sapiens, clone hRPK.37_A_1, complete sequence
          Length = 156833

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 193    cctgttgctattgcaaagaaca 214
              ||||||||||||||||||||||
Sbjct: 132734 cctgttgctattgcaaagaaca 132713
to top
>dbj|AP001660.1| Homo sapiens genomic DNA, chromosome 21q, section 4/105
          Length = 340000

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 193    cctgttgctattgcaaagaaca 214
              ||||||||||||||||||||||
Sbjct: 209020 cctgttgctattgcaaagaaca 209041
to top
>emb|AL078615.2|HS98L15 Homo sapiens chromosome 21 PAC RPCIP704L1598Q2, complete sequence
          Length = 116189

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 193   cctgttgctattgcaaagaaca 214
             ||||||||||||||||||||||
Sbjct: 20454 cctgttgctattgcaaagaaca 20475
to top
>emb|BX855606.3| Mouse DNA sequence from clone RP24-136M10 on chromosome 4, complete
            sequence
          Length = 79882

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 393  aaacagaagagaatcagaaaagtga 417
            ||||||||||||| |||||||||||
Sbjct: 2204 aaacagaagagaaacagaaaagtga 2180
to top
>gb|AC104781.4| Homo sapiens BAC clone RP11-30C22 from 2, complete sequence
          Length = 109843

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    tgttacacatctgaccctcaa 83
             |||||||||||||||||||||
Sbjct: 55977 tgttacacatctgaccctcaa 55997
to top
>emb|AJ316276.1|CTA316276 Caulerpa taxifolia 18S rRNA gene (partial), 5.8S rRNA gene, 28S
           rRNA gene (partial), internal transcribed spacer 1
           (ITS1) and internal transcribed spacer 2 (ITS2), clone 1
          Length = 625

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 195 tgttgctattgcaaagaacat 215
           |||||||||||||||||||||
Sbjct: 96  tgttgctattgcaaagaacat 116
to top
>gb|AC165250.2| Mus musculus BAC clone RP24-209D3 from chromosome 13, complete sequence
          Length = 173581

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 139    cctaaataacattacaaagca 159
              |||||||||||||||||||||
Sbjct: 110311 cctaaataacattacaaagca 110291
to top
>gb|AC113474.18| Mus musculus chromosome 5, clone RP23-297J17, complete sequence
          Length = 219936

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 387    gaaaacaaacagaagagaat 406
              ||||||||||||||||||||
Sbjct: 103579 gaaaacaaacagaagagaat 103598
to top
>gb|AC145477.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1402B06,
              complete sequence
          Length = 134001

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 388    aaaacaaacagaagagaatc 407
              ||||||||||||||||||||
Sbjct: 130220 aaaacaaacagaagagaatc 130201
to top
>gb|AC135239.3| Mus musculus BAC clone RP23-324D2 from chromosome 3, complete sequence
          Length = 190178

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 191   aacctgttgctattgcaaagaaca 214
             ||||||||||| ||||||||||||
Sbjct: 96624 aacctgttgctcttgcaaagaaca 96601
to top
>gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0042F15, complete sequence
          Length = 162959

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   aaaacaaacagaagagaatc 407
             ||||||||||||||||||||
Sbjct: 37409 aaaacaaacagaagagaatc 37390
to top
>emb|CT030514.1| Xenopus tropicalis finished cDNA, clone TTpA022d06
          Length = 2879

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 242 aagggtcaaattaatgagat 261
           ||||||||||||||||||||
Sbjct: 221 aagggtcaaattaatgagat 240
to top
>gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2 of
              11 of the complete sequence
          Length = 613322

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 399    aagagaatcagaaaagtgaa 418
              ||||||||||||||||||||
Sbjct: 150399 aagagaatcagaaaagtgaa 150418
to top
>gb|AC100953.12| Mus musculus chromosome 5, clone RP23-73P16, complete sequence
          Length = 216490

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 382   caacagaaaacaaacagaag 401
             ||||||||||||||||||||
Sbjct: 87302 caacagaaaacaaacagaag 87283
to top
>gb|AC154352.2| Mus musculus BAC clone RP24-545J11 from chromosome 13, complete sequence
          Length = 199388

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 523    cttccaactccatatcttcc 542
              ||||||||||||||||||||
Sbjct: 156756 cttccaactccatatcttcc 156737
to top
>emb|AL590132.7| Human DNA sequence from clone RP11-255G4 on chromosome 1 Contains part
             of the KCNH1 gene for a potassium voltage-gated channel,
             subfamily H (eag-related), member, complete sequence
          Length = 150090

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   agaagagaatcagaaaagtg 416
             ||||||||||||||||||||
Sbjct: 21709 agaagagaatcagaaaagtg 21728
to top
>emb|AL359262.9| Human DNA sequence from clone RP11-334O13 on chromosome 13 Contains a
              high-mobility group pseudogene, complete sequence
          Length = 162763

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 148    cattacaaagcaaatccttc 167
              ||||||||||||||||||||
Sbjct: 119924 cattacaaagcaaatccttc 119905
to top
>emb|AL162717.10| Human DNA sequence from clone RP11-123H22 on chromosome 13q14.2-21.2
             Contains a novel gene, complete sequence
          Length = 153859

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 399   aagagaatcagaaaagtgaa 418
             ||||||||||||||||||||
Sbjct: 29978 aagagaatcagaaaagtgaa 29997
to top
>emb|AL136455.6| Human DNA sequence from clone RP11-97C18 on chromosome 1p13.3-21.2
             Contains an adaptor-related protein complex 2, beta 1
             subunit (AP2B1) pseudogene, complete sequence
          Length = 159570

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 404   aatcagaaaagtgaaaatat 423
             ||||||||||||||||||||
Sbjct: 64505 aatcagaaaagtgaaaatat 64486
to top
>gb|AC163212.3| Mus musculus chromosome 3, clone RP24-102O2, complete sequence
          Length = 199319

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 191   aacctgttgctattgcaaagaaca 214
             ||||||||||| ||||||||||||
Sbjct: 67066 aacctgttgctcttgcaaagaaca 67043
to top
>gb|AC108078.3| Homo sapiens BAC clone RP11-790I12 from 4, complete sequence
          Length = 103343

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 380   ttcaacagaaaacaaacaga 399
             ||||||||||||||||||||
Sbjct: 65498 ttcaacagaaaacaaacaga 65479
to top
>gb|AC104041.5| Homo sapiens chromosome 15, clone CTD-2034I4, complete sequence
          Length = 188519

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 405    atcagaaaagtgaaaatata 424
              ||||||||||||||||||||
Sbjct: 125220 atcagaaaagtgaaaatata 125239
to top
>gb|AC091214.20| Homo sapiens 12q BAC RP11-13F9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 143331

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 382   caacagaaaacaaacagaagagaa 405
             |||||||||| |||||||||||||
Sbjct: 76316 caacagaaaagaaacagaagagaa 76293
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 388     aaaacaaacagaagagaatc 407
               ||||||||||||||||||||
Sbjct: 7852634 aaaacaaacagaagagaatc 7852615
to top
>gb|AC097536.3| Homo sapiens BAC clone RP11-803N5 from 2, complete sequence
          Length = 194553

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   aaaagtgaaaatatatcagg 429
             ||||||||||||||||||||
Sbjct: 23311 aaaagtgaaaatatatcagg 23292
to top
>ref|NM_001011408.1| Xenopus tropicalis hypothetical LOC496885 (LOC496885), mRNA
          Length = 1567

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 242 aagggtcaaattaatgagat 261
           ||||||||||||||||||||
Sbjct: 207 aagggtcaaattaatgagat 226
to top
>gb|AF135419.1|AF135419 sHomo sapiens 4q13 genomic sequence
          Length = 63705

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 380   ttcaacagaaaacaaacaga 399
             ||||||||||||||||||||
Sbjct: 23524 ttcaacagaaaacaaacaga 23543
to top
>emb|BX679673.6| Mouse DNA sequence from clone RP23-252K15 on chromosome X, complete
             sequence
          Length = 81270

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 205   gcaaagaacatttttctacatcac 228
             ||||||||||||||||| ||||||
Sbjct: 37927 gcaaagaacatttttctccatcac 37950
to top
>emb|BX004989.8| Zebrafish DNA sequence from clone CH211-167M4 in linkage group 6,
              complete sequence
          Length = 172968

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 473    gtcatcagattccttcttgc 492
              ||||||||||||||||||||
Sbjct: 126693 gtcatcagattccttcttgc 126712
to top
>dbj|AK069902.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034K17, full
           insert sequence
          Length = 1306

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 388 aaaacaaacagaagagaatc 407
           ||||||||||||||||||||
Sbjct: 698 aaaacaaacagaagagaatc 679
to top
>emb|AL359950.4|CNS05TF2 Human chromosome 14 DNA sequence BAC R-566K8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 194407

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 386   agaaaacaaacagaagagaa 405
             ||||||||||||||||||||
Sbjct: 69528 agaaaacaaacagaagagaa 69509
to top
>emb|BX663521.10| Zebrafish DNA sequence from clone DKEYP-50F5 in linkage group 14,
              complete sequence
          Length = 179663

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 473    gtcatcagattccttcttgc 492
              ||||||||||||||||||||
Sbjct: 108217 gtcatcagattccttcttgc 108198
to top
>emb|BX005458.19| Zebrafish DNA sequence from clone CH211-173L10 in linkage group 18,
             complete sequence
          Length = 140289

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 371   ctctgcagattcaacagaaaacaa 394
             |||||||||||||||| |||||||
Sbjct: 28581 ctctgcagattcaacacaaaacaa 28604
to top
>dbj|AP001835.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-668M17, complete
             sequences
          Length = 204939

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   caaatccttcctatccagct 177
             ||||||||||||||||||||
Sbjct: 97277 caaatccttcctatccagct 97296
to top
>dbj|AP000755.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-716H6, complete
              sequences
          Length = 152306

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    caaatccttcctatccagct 177
              ||||||||||||||||||||
Sbjct: 151356 caaatccttcctatccagct 151375
to top
>gb|BC088778.1| Xenopus tropicalis hypothetical LOC496885, mRNA (cDNA clone
           MGC:108162 IMAGE:7006695), complete cds
          Length = 1567

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 242 aagggtcaaattaatgagat 261
           ||||||||||||||||||||
Sbjct: 207 aagggtcaaattaatgagat 226
to top
>emb|AL773540.18| Mouse DNA sequence from clone RP23-177L19 on chromosome 2, complete
             sequence
          Length = 217148

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   cctgttgctattgcaaagaa 212
             ||||||||||||||||||||
Sbjct: 74063 cctgttgctattgcaaagaa 74082
to top
>emb|AL837507.5| Mouse DNA sequence from clone RP23-267B2 on chromosome 4, complete
             sequence
          Length = 99832

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 509   atcagggtttttctcttccaactc 532
             ||||||| ||||||||||||||||
Sbjct: 59917 atcagggcttttctcttccaactc 59940


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,500,801
Number of Sequences: 3902068
Number of extensions: 5500801
Number of successful extensions: 109348
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109195
Number of HSP's gapped (non-prelim): 147
length of query: 542
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 519
effective length of database: 17,143,297,704
effective search space: 8897371508376
effective search space used: 8897371508376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top