ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLMM_STRT2 (Q5M3V8) Phosphoglucosamine mutase (EC 5.4.2.10) 31 2.9
2GLMM_STRT1 (Q5LZA7) Phosphoglucosamine mutase (EC 5.4.2.10) 31 2.9
3FLHE_SALTY (P0A1N4) Flagellar protein flhE precursor 29 8.3
4FLHE_SALTI (P0A1N5) Flagellar protein flhE precursor 29 8.3

>GLMM_STRT2 (Q5M3V8) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 450

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = -2

Query: 511 YSDGIRSVEPAKFVASAGLSDGLLFTELDRPDGQPCVEAQEFSLVRNMFIAVVEER 344
           Y +G+R  E  KF+ + GL  G +   LD  +G   V A+   L  N  IAV+ ++
Sbjct: 153 YPEGLRKYE--KFLVTTGLDLGGMKVALDAANGAAAVSARNIFLDLNAEIAVIGDQ 206



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>GLMM_STRT1 (Q5LZA7) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 450

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = -2

Query: 511 YSDGIRSVEPAKFVASAGLSDGLLFTELDRPDGQPCVEAQEFSLVRNMFIAVVEER 344
           Y +G+R  E  KF+ + GL  G +   LD  +G   V A+   L  N  IAV+ ++
Sbjct: 153 YPEGLRKYE--KFLVTTGLDLGGMKVALDAANGAAAVSARNIFLDLNAEIAVIGDQ 206



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>FLHE_SALTY (P0A1N4) Flagellar protein flhE precursor|
          Length = 130

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 128 QSSPLHGFRTHFCIYTVQRGWSVDMGGGVITILRTEDNMIQIEYR 262
           QS   HGF     +  ++  W V  GG +I  L+   N + + YR
Sbjct: 86  QSGTTHGFAHVPAVEPLRFVWEVPGGGRLIPALKVRSNQVIVNYR 130



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>FLHE_SALTI (P0A1N5) Flagellar protein flhE precursor|
          Length = 130

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 128 QSSPLHGFRTHFCIYTVQRGWSVDMGGGVITILRTEDNMIQIEYR 262
           QS   HGF     +  ++  W V  GG +I  L+   N + + YR
Sbjct: 86  QSGTTHGFAHVPAVEPLRFVWEVPGGGRLIPALKVRSNQVIVNYR 130


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,964,009
Number of Sequences: 219361
Number of extensions: 1775081
Number of successful extensions: 3959
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3959
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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