Clone Information

BLAST Search Result

Clone Name	rbasd19b08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_481915.1\| Oryza sativa (japonica cultivar-group), mRNA	262	1e-66
2	ref\|XM_481914.1\| Oryza sativa (japonica cultivar-group), mRNA	262	1e-66
3	ref\|XM_507201.1\| PREDICTED Oryza sativa (japonica cultivar-group...	262	1e-66
4	dbj\|AK112035.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	262	1e-66
5	dbj\|AK105899.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	262	1e-66
6	dbj\|AK070322.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	254	3e-64
7	gb\|AY106382.1\| Zea mays PCO146928 mRNA sequence	224	2e-55
8	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	98	4e-17
9	dbj\|AP005520.3\| Oryza sativa (japonica cultivar-group) genomic D...	98	4e-17
10	emb\|AL929165.9\| Mouse DNA sequence from clone RP23-446D4 on chro...	44	0.50
11	gb\|AC123650.7\| Mus musculus chromosome 1, clone RP23-124N16, com...	40	7.8
12	gb\|AC119893.9\| Mus musculus chromosome 1, clone RP24-225A6, comp...	40	7.8
13	gb\|DQ167205.1\| Zea mays putative wound responsive protein mRNA, ...	40	7.8
14	gb\|AC078859.13\| Homo sapiens 3 BAC RP11-588N12 (Roswell Park Can...	40	7.8
15	emb\|Z68131.1\|CEB0395 Caenorhabditis elegans Cosmid B0395, comple...	40	7.8
16	gb\|AC124541.4\| Mus musculus BAC clone RP23-257F7 from 7, complet...	40	7.8
17	gb\|AC146342.5\| Medicago truncatula clone mth2-10o20, complete se...	40	7.8
18	gb\|AC078958.30\| Homo sapiens X BAC RP11-609C15 (Roswell Park Can...	40	7.8
19	ref\|NM_164854.1\| Drosophila melanogaster Excitatory amino acid t...	40	7.8
20	ref\|NM_164853.1\| Drosophila melanogaster Excitatory amino acid t...	40	7.8
21	ref\|NM_058080.2\| Drosophila melanogaster Excitatory amino acid t...	40	7.8
22	emb\|BX664716.19\| Zebrafish DNA sequence from clone DKEY-3D4 in l...	40	7.8
23	dbj\|BA000045.2\| Gloeobacter violaceus PCC 7421 DNA, complete genome	40	7.8
24	dbj\|AP006285.2\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	7.8
25	gb\|BT021304.1\| Drosophila melanogaster RE20434 full insert cDNA	40	7.8
26	dbj\|AK065414.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.8
27	emb\|CT033770.2\| Medicago truncatula chromosome 5 clone mth2-176e...	40	7.8
28	gb\|AF001784.1\|AF001784 Drosophila melanogaster sodium-dependent ...	40	7.8
29	gb\|AC149605.7\| Mus musculus BAC clone RP23-473E20 from 7, comple...	40	7.8
30	dbj\|D86739.2\| Drosophila melanogaster mRNA for glutamate transpo...	40	7.8

>ref|XM_481915.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1119

 Score =  262 bits (132), Expect = 1e-66
 Identities = 249/288 (86%)
 Strand = Plus / Minus

                                                                       
Query: 272 ctttcaggcccagttcttccgcttggacctcagcttcattagtttgtccttccatgttgc 331
           ||||||||||||||| |||||||| |||||||||  ||| ||||||||| |||| |||||
Sbjct: 948 ctttcaggcccagtttttccgcttagacctcagcagcatcagtttgtccctccacgttgc 889

                                                                       
Query: 332 tgcatctttgtatctctcttcaacaactgcaatgaacatgtttcgcaccaaactaaactc 391
            |||||||||||||||||||||||| ||||||||| |||||| || | ||| | ||||||
Sbjct: 888 agcatctttgtatctctcttcaacagctgcaatgagcatgttccggatcaatccaaactc 829

                                                                       
Query: 392 ttgagcctcaacgcagggctgtccatcaggtctgtcaagttcagtaaacaacaaaccatc 451
           ||||||||| || || ||||| |||||||||||||||||||| ||||||||||| || ||
Sbjct: 828 ttgagcctcgacacatggctgcccatcaggtctgtcaagttctgtaaacaacaacccgtc 769

                                                                       
Query: 452 tgataggccagctgaggccacaaattttgctggctcgactgatcttatgccgtcgctgta 511
            || | ||| ||||    | | | | ||||||||||||||||||||||||| || |||||
Sbjct: 768 agacatgccggctgctatcgccattcttgctggctcgactgatcttatgccatcactgta 709

                                                           
Query: 512 tgcaagactcctatgtacttgtataggaaccttgcagcgaacagcaat 559
           |||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 708 tgcaaggcttctatggacttgtataggaaccttgcagcgaacagcaat 661

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>ref|XM_481914.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1460

 Score =  262 bits (132), Expect = 1e-66
 Identities = 249/288 (86%)
 Strand = Plus / Minus

                                                                        
Query: 272  ctttcaggcccagttcttccgcttggacctcagcttcattagtttgtccttccatgttgc 331
            ||||||||||||||| |||||||| |||||||||  ||| ||||||||| |||| |||||
Sbjct: 1243 ctttcaggcccagtttttccgcttagacctcagcagcatcagtttgtccctccacgttgc 1184

                                                                        
Query: 332  tgcatctttgtatctctcttcaacaactgcaatgaacatgtttcgcaccaaactaaactc 391
             |||||||||||||||||||||||| ||||||||| |||||| || | ||| | ||||||
Sbjct: 1183 agcatctttgtatctctcttcaacagctgcaatgagcatgttccggatcaatccaaactc 1124

                                                                        
Query: 392  ttgagcctcaacgcagggctgtccatcaggtctgtcaagttcagtaaacaacaaaccatc 451
            ||||||||| || || ||||| |||||||||||||||||||| ||||||||||| || ||
Sbjct: 1123 ttgagcctcgacacatggctgcccatcaggtctgtcaagttctgtaaacaacaacccgtc 1064

                                                                        
Query: 452  tgataggccagctgaggccacaaattttgctggctcgactgatcttatgccgtcgctgta 511
             || | ||| ||||    | | | | ||||||||||||||||||||||||| || |||||
Sbjct: 1063 agacatgccggctgctatcgccattcttgctggctcgactgatcttatgccatcactgta 1004

                                                            
Query: 512  tgcaagactcctatgtacttgtataggaaccttgcagcgaacagcaat 559
            |||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 1003 tgcaaggcttctatggacttgtataggaaccttgcagcgaacagcaat 956

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>ref|XM_507201.1| PREDICTED Oryza sativa (japonica cultivar-group), P0426E02.15-2 mRNA
          Length = 1525

 Score =  262 bits (132), Expect = 1e-66
 Identities = 249/288 (86%)
 Strand = Plus / Minus

                                                                        
Query: 272  ctttcaggcccagttcttccgcttggacctcagcttcattagtttgtccttccatgttgc 331
            ||||||||||||||| |||||||| |||||||||  ||| ||||||||| |||| |||||
Sbjct: 1223 ctttcaggcccagtttttccgcttagacctcagcagcatcagtttgtccctccacgttgc 1164

                                                                        
Query: 332  tgcatctttgtatctctcttcaacaactgcaatgaacatgtttcgcaccaaactaaactc 391
             |||||||||||||||||||||||| ||||||||| |||||| || | ||| | ||||||
Sbjct: 1163 agcatctttgtatctctcttcaacagctgcaatgagcatgttccggatcaatccaaactc 1104

                                                                        
Query: 392  ttgagcctcaacgcagggctgtccatcaggtctgtcaagttcagtaaacaacaaaccatc 451
            ||||||||| || || ||||| |||||||||||||||||||| ||||||||||| || ||
Sbjct: 1103 ttgagcctcgacacatggctgcccatcaggtctgtcaagttctgtaaacaacaacccgtc 1044

                                                                        
Query: 452  tgataggccagctgaggccacaaattttgctggctcgactgatcttatgccgtcgctgta 511
             || | ||| ||||    | | | | ||||||||||||||||||||||||| || |||||
Sbjct: 1043 agacatgccggctgctatcgccattcttgctggctcgactgatcttatgccatcactgta 984

                                                            
Query: 512  tgcaagactcctatgtacttgtataggaaccttgcagcgaacagcaat 559
            |||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 983  tgcaaggcttctatggacttgtataggaaccttgcagcgaacagcaat 936

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>dbj|AK112035.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G04, full
           insert sequence
          Length = 1119

 Score =  262 bits (132), Expect = 1e-66
 Identities = 249/288 (86%)
 Strand = Plus / Minus

                                                                       
Query: 272 ctttcaggcccagttcttccgcttggacctcagcttcattagtttgtccttccatgttgc 331
           ||||||||||||||| |||||||| |||||||||  ||| ||||||||| |||| |||||
Sbjct: 948 ctttcaggcccagtttttccgcttagacctcagcagcatcagtttgtccctccacgttgc 889

                                                                       
Query: 332 tgcatctttgtatctctcttcaacaactgcaatgaacatgtttcgcaccaaactaaactc 391
            |||||||||||||||||||||||| ||||||||| |||||| || | ||| | ||||||
Sbjct: 888 agcatctttgtatctctcttcaacagctgcaatgagcatgttccggatcaatccaaactc 829

                                                                       
Query: 392 ttgagcctcaacgcagggctgtccatcaggtctgtcaagttcagtaaacaacaaaccatc 451
           ||||||||| || || ||||| |||||||||||||||||||| ||||||||||| || ||
Sbjct: 828 ttgagcctcgacacatggctgcccatcaggtctgtcaagttctgtaaacaacaacccgtc 769

                                                                       
Query: 452 tgataggccagctgaggccacaaattttgctggctcgactgatcttatgccgtcgctgta 511
            || | ||| ||||    | | | | ||||||||||||||||||||||||| || |||||
Sbjct: 768 agacatgccggctgctatcgccattcttgctggctcgactgatcttatgccatcactgta 709

                                                           
Query: 512 tgcaagactcctatgtacttgtataggaaccttgcagcgaacagcaat 559
           |||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 708 tgcaaggcttctatggacttgtataggaaccttgcagcgaacagcaat 661

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>dbj|AK105899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F07, full
            insert sequence
          Length = 1460

 Score =  262 bits (132), Expect = 1e-66
 Identities = 249/288 (86%)
 Strand = Plus / Minus

                                                                        
Query: 272  ctttcaggcccagttcttccgcttggacctcagcttcattagtttgtccttccatgttgc 331
            ||||||||||||||| |||||||| |||||||||  ||| ||||||||| |||| |||||
Sbjct: 1243 ctttcaggcccagtttttccgcttagacctcagcagcatcagtttgtccctccacgttgc 1184

                                                                        
Query: 332  tgcatctttgtatctctcttcaacaactgcaatgaacatgtttcgcaccaaactaaactc 391
             |||||||||||||||||||||||| ||||||||| |||||| || | ||| | ||||||
Sbjct: 1183 agcatctttgtatctctcttcaacagctgcaatgagcatgttccggatcaatccaaactc 1124

                                                                        
Query: 392  ttgagcctcaacgcagggctgtccatcaggtctgtcaagttcagtaaacaacaaaccatc 451
            ||||||||| || || ||||| |||||||||||||||||||| ||||||||||| || ||
Sbjct: 1123 ttgagcctcgacacatggctgcccatcaggtctgtcaagttctgtaaacaacaacccgtc 1064

                                                                        
Query: 452  tgataggccagctgaggccacaaattttgctggctcgactgatcttatgccgtcgctgta 511
             || | ||| ||||    | | | | ||||||||||||||||||||||||| || |||||
Sbjct: 1063 agacatgccggctgctatcgccattcttgctggctcgactgatcttatgccatcactgta 1004

                                                            
Query: 512  tgcaagactcctatgtacttgtataggaaccttgcagcgaacagcaat 559
            |||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 1003 tgcaaggcttctatggacttgtataggaaccttgcagcgaacagcaat 956

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>dbj|AK070322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052C20, full
            insert sequence
          Length = 1525

 Score =  254 bits (128), Expect = 3e-64
 Identities = 248/288 (86%)
 Strand = Plus / Minus

                                                                        
Query: 272  ctttcaggcccagttcttccgcttggacctcagcttcattagtttgtccttccatgttgc 331
            ||||||||||||||| |||||||| |||||||||  ||| ||||||||| |||| |||||
Sbjct: 1223 ctttcaggcccagtttttccgcttagacctcagcagcatcagtttgtccctccacgttgc 1164

                                                                        
Query: 332  tgcatctttgtatctctcttcaacaactgcaatgaacatgtttcgcaccaaactaaactc 391
             |||||||||||||||||||||||| ||||||||| |||||| || | ||| | ||||||
Sbjct: 1163 agcatctttgtatctctcttcaacagctgcaatgagcatgttccggatcaatccaaactc 1104

                                                                        
Query: 392  ttgagcctcaacgcagggctgtccatcaggtctgtcaagttcagtaaacaacaaaccatc 451
            ||||||||| || || ||||| |||||||||||||||||||  ||||||||||| || ||
Sbjct: 1103 ttgagcctcgacacatggctgcccatcaggtctgtcaagttttgtaaacaacaacccgtc 1044

                                                                        
Query: 452  tgataggccagctgaggccacaaattttgctggctcgactgatcttatgccgtcgctgta 511
             || | ||| ||||    | | | | ||||||||||||||||||||||||| || |||||
Sbjct: 1043 agacatgccggctgctatcgccattcttgctggctcgactgatcttatgccatcactgta 984

                                                            
Query: 512  tgcaagactcctatgtacttgtataggaaccttgcagcgaacagcaat 559
            |||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 983  tgcaaggcttctatggacttgtataggaaccttgcagcgaacagcaat 936

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>gb|AY106382.1| Zea mays PCO146928 mRNA sequence
          Length = 1474

 Score =  224 bits (113), Expect = 2e-55
 Identities = 242/285 (84%)
 Strand = Plus / Minus

                                                                        
Query: 275  tcaggcccagttcttccgcttggacctcagcttcattagtttgtccttccatgttgctgc 334
            |||||||||||||| |||||| ||||| |||   || |||||||||||||||| ||| ||
Sbjct: 1207 tcaggcccagttctcccgcttagacctgagccgaatcagtttgtccttccatgatgcagc 1148

                                                                        
Query: 335  atctttgtatctctcttcaacaactgcaatgaacatgtttcgcaccaaactaaactcttg 394
            ||| |||||||||||||| ||  ||||||||| ||||||   |||||| | |||||||||
Sbjct: 1147 atccttgtatctctcttctacggctgcaatgagcatgttcttcaccaatccaaactcttg 1088

                                                                        
Query: 395  agcctcaacgcagggctgtccatcaggtctgtcaagttcagtaaacaacaaaccatctga 454
            |||||||||  | | ||||||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 1087 agcctcaacagatgcctgtccatcgggtctgtcaagctctgtaaataacaacccatctga 1028

                                                                        
Query: 455  taggccagctgaggccacaaattttgctggctcgactgatcttatgccgtcgctgtatgc 514
            |||||||||||   |  | | | ||||||||||||||| ||| |||||||| ||||||||
Sbjct: 1027 taggccagctgctactgccattcttgctggctcgactggtctgatgccgtcactgtatgc 968

                                                         
Query: 515  aagactcctatgtacttgtataggaaccttgcagcgaacagcaat 559
            |||||| ||||| ||||||| |||||||||||| |||||||||||
Sbjct: 967  aagacttctatggacttgtacaggaaccttgcaacgaacagcaat 923

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 82/93 (88%)
 Strand = Plus / Plus

                                                                            
Query: 333      gcatctttgtatctctcttcaacaactgcaatgaacatgtttcgcaccaaactaaactct 392
                |||||||||||||||||||||||| ||||||||| |||||| || | ||| | |||||||
Sbjct: 16333823 gcatctttgtatctctcttcaacagctgcaatgagcatgttccggatcaatccaaactct 16333882

                                                 
Query: 393      tgagcctcaacgcagggctgtccatcaggtctg 425
                |||||||| || || ||||| ||||||||||||
Sbjct: 16333883 tgagcctcgacacatggctgcccatcaggtctg 16333915



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 61/66 (92%)
 Strand = Plus / Plus

                                                                            
Query: 478      ttgctggctcgactgatcttatgccgtcgctgtatgcaagactcctatgtacttgtatag 537
                ||||||||||||||||||||||||| || ||||||||||| || ||||| ||||||||||
Sbjct: 16334608 ttgctggctcgactgatcttatgccatcactgtatgcaaggcttctatggacttgtatag 16334667

                      
Query: 538      gaacct 543
                ||||||
Sbjct: 16334668 gaacct 16334673



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                            
Query: 269      aacctttcaggcccagttcttccgcttggacctcagcttcattagtttgtccttccatgt 328
                |||||||||||||||||| |||||||| |||||||||  ||| ||||||||| |||| ||
Sbjct: 16333465 aacctttcaggcccagtttttccgcttagacctcagcagcatcagtttgtccctccacgt 16333524

                     
Query: 329      tgctg 333
                |||||
Sbjct: 16333525 tgctg 16333529



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 540      accttgcagcgaacagcaat 559
                ||||||||||||||||||||
Sbjct: 16335150 accttgcagcgaacagcaat 16335169

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>dbj|AP005520.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0426E02
          Length = 166985

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 82/93 (88%)
 Strand = Plus / Plus

                                                                         
Query: 333   gcatctttgtatctctcttcaacaactgcaatgaacatgtttcgcaccaaactaaactct 392
             |||||||||||||||||||||||| ||||||||| |||||| || | ||| | |||||||
Sbjct: 39675 gcatctttgtatctctcttcaacagctgcaatgagcatgttccggatcaatccaaactct 39734

                                              
Query: 393   tgagcctcaacgcagggctgtccatcaggtctg 425
             |||||||| || || ||||| ||||||||||||
Sbjct: 39735 tgagcctcgacacatggctgcccatcaggtctg 39767



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 61/66 (92%)
 Strand = Plus / Plus

                                                                         
Query: 478   ttgctggctcgactgatcttatgccgtcgctgtatgcaagactcctatgtacttgtatag 537
             ||||||||||||||||||||||||| || ||||||||||| || ||||| ||||||||||
Sbjct: 40460 ttgctggctcgactgatcttatgccatcactgtatgcaaggcttctatggacttgtatag 40519

                   
Query: 538   gaacct 543
             ||||||
Sbjct: 40520 gaacct 40525



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                         
Query: 269   aacctttcaggcccagttcttccgcttggacctcagcttcattagtttgtccttccatgt 328
             |||||||||||||||||| |||||||| |||||||||  ||| ||||||||| |||| ||
Sbjct: 39317 aacctttcaggcccagtttttccgcttagacctcagcagcatcagtttgtccctccacgt 39376

                  
Query: 329   tgctg 333
             |||||
Sbjct: 39377 tgctg 39381



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 540   accttgcagcgaacagcaat 559
             ||||||||||||||||||||
Sbjct: 41002 accttgcagcgaacagcaat 41021

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>emb|AL929165.9| Mouse DNA sequence from clone RP23-446D4 on chromosome 2, complete
              sequence
          Length = 181326

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 44     tgaatattagtctgaatttaca 65
              ||||||||||||||||||||||
Sbjct: 171889 tgaatattagtctgaatttaca 171910

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>gb|AC123650.7| Mus musculus chromosome 1, clone RP23-124N16, complete sequence
          Length = 220806

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 173    acagtccaaagaggctggtc 192
              ||||||||||||||||||||
Sbjct: 210522 acagtccaaagaggctggtc 210503

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>gb|AC119893.9| Mus musculus chromosome 1, clone RP24-225A6, complete sequence
          Length = 179453

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    acagtccaaagaggctggtc 192
              ||||||||||||||||||||
Sbjct: 131851 acagtccaaagaggctggtc 131870

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>gb|DQ167205.1| Zea mays putative wound responsive protein mRNA, complete cds
          Length = 717

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 536 aggaaccttgcagcgaacagcaat 559
           |||||||||||| |||||||||||
Sbjct: 702 aggaaccttgcaacgaacagcaat 679

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>gb|AC078859.13| Homo sapiens 3 BAC RP11-588N12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 176802

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    cttctgagggccttggaata 92
             ||||||||||||||||||||
Sbjct: 77387 cttctgagggccttggaata 77368

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>emb|Z68131.1|CEB0395 Caenorhabditis elegans Cosmid B0395, complete sequence
          Length = 25671

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   atttttgtatttacacagtc 178
             ||||||||||||||||||||
Sbjct: 11377 atttttgtatttacacagtc 11396

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>gb|AC124541.4| Mus musculus BAC clone RP23-257F7 from 7, complete sequence
          Length = 145556

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 328   ttgctgcatctttgtatctctcttcaac 355
             |||||||||||| || ||||||||||||
Sbjct: 47648 ttgctgcatcttggtgtctctcttcaac 47621

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>gb|AC146342.5| Medicago truncatula clone mth2-10o20, complete sequence
          Length = 112154

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   atgaacatgtttcgcaccaa 382
             ||||||||||||||||||||
Sbjct: 23204 atgaacatgtttcgcaccaa 23185

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>gb|AC078958.30| Homo sapiens X BAC RP11-609C15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 187547

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 354    acaactgcaatgaacatgtt 373
              ||||||||||||||||||||
Sbjct: 173117 acaactgcaatgaacatgtt 173098

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>ref|NM_164854.1| Drosophila melanogaster Excitatory amino acid transporter 1
           CG3747-RC, transcript variant C (Eaat1), mRNA
          Length = 2574

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 tgaacatgtttcgcaccaaa 383
           ||||||||||||||||||||
Sbjct: 731 tgaacatgtttcgcaccaaa 712

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>ref|NM_164853.1| Drosophila melanogaster Excitatory amino acid transporter 1
           CG3747-RB, transcript variant B (Eaat1), mRNA
          Length = 2515

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 tgaacatgtttcgcaccaaa 383
           ||||||||||||||||||||
Sbjct: 672 tgaacatgtttcgcaccaaa 653

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>ref|NM_058080.2| Drosophila melanogaster Excitatory amino acid transporter 1
           CG3747-RA, transcript variant A (Eaat1), mRNA
          Length = 2689

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 tgaacatgtttcgcaccaaa 383
           ||||||||||||||||||||
Sbjct: 846 tgaacatgtttcgcaccaaa 827

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>emb|BX664716.19| Zebrafish DNA sequence from clone DKEY-3D4 in linkage group 9, complete
             sequence
          Length = 198430

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 426   tcaagttcagtaaacaacaa 445
             ||||||||||||||||||||
Sbjct: 45157 tcaagttcagtaaacaacaa 45176

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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 475     attttgctggctcgactgat 494
               ||||||||||||||||||||
Sbjct: 2406458 attttgctggctcgactgat 2406439

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>dbj|AP006285.2| Homo sapiens genomic DNA, chromosome 11 clone:RP13-25N22, complete
              sequence
          Length = 190267

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 171    acacagtccaaagaggctggtctg 194
              |||||| |||||||||||||||||
Sbjct: 161056 acacagcccaaagaggctggtctg 161033

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>gb|BT021304.1| Drosophila melanogaster RE20434 full insert cDNA
          Length = 2886

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 tgaacatgtttcgcaccaaa 383
           ||||||||||||||||||||
Sbjct: 726 tgaacatgtttcgcaccaaa 707

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>dbj|AK065414.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022J10, full
           insert sequence
          Length = 1348

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 528 acttgtataggaaccttgcagcgaacagcaatattgatagcatc 571
           ||||||||||||||||| || || | |||||| ||||| |||||
Sbjct: 860 acttgtataggaaccttacaccggaaagcaatgttgatggcatc 817

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>emb|CT033770.2| Medicago truncatula chromosome 5 clone mth2-176e1, COMPLETE SEQUENCE
          Length = 138194

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   atgaacatgtttcgcaccaa 382
             ||||||||||||||||||||
Sbjct: 19296 atgaacatgtttcgcaccaa 19277

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>gb|AF001784.1|AF001784 Drosophila melanogaster sodium-dependent glutamate transporter
           mRNA, complete cds
          Length = 1440

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 tgaacatgtttcgcaccaaa 383
           ||||||||||||||||||||
Sbjct: 460 tgaacatgtttcgcaccaaa 441

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>gb|AC149605.7| Mus musculus BAC clone RP23-473E20 from 7, complete sequence
          Length = 195585

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 328    ttgctgcatctttgtatctctcttcaac 355
              |||||||||||| || ||||||||||||
Sbjct: 164654 ttgctgcatcttggtgtctctcttcaac 164681

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>dbj|D86739.2| Drosophila melanogaster mRNA for glutamate transporter, complete
           cds
          Length = 2689

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 tgaacatgtttcgcaccaaa 383
           ||||||||||||||||||||
Sbjct: 846 tgaacatgtttcgcaccaaa 827


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,743,260
Number of Sequences: 3902068
Number of extensions: 5743260
Number of successful extensions: 97720
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97633
Number of HSP's gapped (non-prelim): 87
length of query: 572
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 549
effective length of database: 17,143,297,704
effective search space: 9411670439496
effective search space used: 9411670439496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result