ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19b06 |
|---|---|
| Clone Library Name | barley_pub |
>FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUSE-binding| protein 1) (FBP) (DNA helicase V) (HDH V) Length = 643 Score = 47.8 bits (112), Expect = 3e-05 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%) Frame = -1 Query: 550 VDASLAGAIIGKGGVNTKHISRMTGAKLAIRDN---EADPNHKNIELEGSFDQVNHASAM 380 V G IIGKGG K IS+ +GA++ ++ N ADPN K + G+ Q+++A + Sbjct: 382 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 441 Query: 379 VKELILRIGGNAPP 338 ++E +IGG P Sbjct: 442 IEE---KIGGPVNP 452 Score = 40.4 bits (93), Expect = 0.005 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Frame = -1 Query: 571 SATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLA-IRDNEADPN-HKNIELEGSFDQV 398 +A +I + AS AG +IGKGG K + G K+ I+D + K + + G +V Sbjct: 184 NAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKV 243 Query: 397 NHASAMVKELILRIGG 350 A MV ELI GG Sbjct: 244 QQAKEMVLELIRDQGG 259 Score = 32.3 bits (72), Expect = 1.4 Identities = 16/67 (23%), Positives = 32/67 (47%) Frame = -1 Query: 565 TAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQVNHAS 386 T + V + G IIG+GG I + +G K+ I + ++ L G+ + V A Sbjct: 101 TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAK 160 Query: 385 AMVKELI 365 ++ +++ Sbjct: 161 RLLDQIV 167
>FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUSE-binding| protein 1) (FBP) Length = 651 Score = 45.8 bits (107), Expect = 1e-04 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%) Frame = -1 Query: 550 VDASLAGAIIGKGGVNTKHISRMTGAKLAIRDN---EADPNHKNIELEGSFDQVNHASAM 380 V G IIGKGG K IS+ +GA++ ++ + ADPN K + G+ Q+++A + Sbjct: 379 VPTGKTGLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQL 438 Query: 379 VKELILRIGGNAPP 338 ++E +IGG P Sbjct: 439 IEE---KIGGPVNP 449 Score = 40.4 bits (93), Expect = 0.005 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Frame = -1 Query: 571 SATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLA-IRDNEADPN-HKNIELEGSFDQV 398 +A +I + AS AG +IGKGG K + G K+ I+D + K + + G +V Sbjct: 181 NAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKV 240 Query: 397 NHASAMVKELILRIGG 350 A MV ELI GG Sbjct: 241 QQAKEMVLELIRDQGG 256 Score = 32.3 bits (72), Expect = 1.4 Identities = 16/67 (23%), Positives = 32/67 (47%) Frame = -1 Query: 565 TAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQVNHAS 386 T + V + G IIG+GG I + +G K+ I + ++ L G+ + V A Sbjct: 98 TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAK 157 Query: 385 AMVKELI 365 ++ +++ Sbjct: 158 RLLDQIV 164
>FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-binding| protein 2) (KH type splicing regulatory protein) (KSRP) (MAP2 RNA trans-acting protein 1) (MARTA1) Length = 721 Score = 45.4 bits (106), Expect = 2e-04 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%) Frame = -1 Query: 553 SVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDN---EADPNHKNIELEGSFDQVNHASA 383 S+ G +IG+GG N K I++ TGA + I DPN K + GS Q++HA Sbjct: 431 SIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAKQ 490 Query: 382 MVKELI 365 +++E I Sbjct: 491 LIEEKI 496 Score = 40.4 bits (93), Expect = 0.005 Identities = 22/79 (27%), Positives = 38/79 (48%) Frame = -1 Query: 571 SATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQVNH 392 S T + V + G IIG+GG I + +G K+ I + +++ L G+ + V Sbjct: 145 SMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQK 204 Query: 391 ASAMVKELILRIGGNAPPQ 335 A M+ +++ R G P Q Sbjct: 205 AKMMLDDIVSRGRGGPPGQ 223 Score = 34.3 bits (77), Expect = 0.37 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Frame = -1 Query: 559 KISVDASLAGAIIGKGGVNTKHISRMTGAK-LAIRDNEADPN-HKNIELEGSFDQVNHAS 386 +I + A AG +IGKGG K + G K + I+D + N K + + G +V A Sbjct: 238 EIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQAC 297 Query: 385 AMVKELI 365 MV +++ Sbjct: 298 EMVMDIL 304
>HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC| stretch-binding protein) (CSBP) Length = 463 Score = 43.9 bits (102), Expect = 5e-04 Identities = 22/76 (28%), Positives = 40/76 (52%) Frame = -1 Query: 577 GASATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQV 398 G T ++++ LAG+IIGKGG K I +GA + I + + I + G+ DQ+ Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 444 Query: 397 NHASAMVKELILRIGG 350 +A +++ + + G Sbjct: 445 QNAQYLLQNSVKQYSG 460
>HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)| Length = 463 Score = 43.9 bits (102), Expect = 5e-04 Identities = 22/76 (28%), Positives = 40/76 (52%) Frame = -1 Query: 577 GASATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQV 398 G T ++++ LAG+IIGKGG K I +GA + I + + I + G+ DQ+ Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 444 Query: 397 NHASAMVKELILRIGG 350 +A +++ + + G Sbjct: 445 QNAQYLLQNSVKQYSG 460
>HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K| Length = 463 Score = 43.9 bits (102), Expect = 5e-04 Identities = 22/76 (28%), Positives = 40/76 (52%) Frame = -1 Query: 577 GASATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQV 398 G T ++++ LAG+IIGKGG K I +GA + I + + I + G+ DQ+ Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 444 Query: 397 NHASAMVKELILRIGG 350 +A +++ + + G Sbjct: 445 QNAQYLLQNSVKQYSG 460
>HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)| (Transformation up-regulated nuclear protein) (TUNP) Length = 463 Score = 43.9 bits (102), Expect = 5e-04 Identities = 22/76 (28%), Positives = 40/76 (52%) Frame = -1 Query: 577 GASATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQV 398 G T ++++ LAG+IIGKGG K I +GA + I + + I + G+ DQ+ Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 444 Query: 397 NHASAMVKELILRIGG 350 +A +++ + + G Sbjct: 445 QNAQYLLQNSVKQYSG 460
>CTH2_YEAST (P47977) Zinc finger protein CTH2 (YTIS11 protein)| Length = 285 Score = 42.7 bits (99), Expect = 0.001 Identities = 17/31 (54%), Positives = 24/31 (77%), Gaps = 1/31 (3%) Frame = -1 Query: 289 FKTKLCDNFN-KGSCTFGDRCHFAHGESELR 200 +KT+LC++F KGSC +G +C FAHG EL+ Sbjct: 170 YKTELCESFTLKGSCPYGSKCQFAHGLGELK 200 Score = 34.7 bits (78), Expect = 0.28 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = -1 Query: 292 NFKTKLCDNFNK-GSCTFGDRCHFAHGE 212 NF+TK C N+ K G C +G RC F HG+ Sbjct: 207 NFRTKPCVNWEKLGYCPYGRRCCFKHGD 234
>TISB_RAT (P17431) Butyrate response factor 1 (TIS11B protein) (EGF-inducible| protein CMG1) Length = 338 Score = 42.0 bits (97), Expect = 0.002 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = -1 Query: 295 SNFKTKLCDNFNK-GSCTFGDRCHFAHGESELR 200 S +KT+LC F + G+C +GD+C FAHG ELR Sbjct: 113 SRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145 Score = 36.2 bits (82), Expect = 0.097 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = -1 Query: 289 FKTKLCDNFNK-GSCTFGDRCHFAHGESELRKSA 191 +KT+LC F+ G C +G RCHF H E R A Sbjct: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRALA 186
>TISB_MOUSE (P23950) Butyrate response factor 1 (TIS11B protein)| Length = 338 Score = 42.0 bits (97), Expect = 0.002 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = -1 Query: 295 SNFKTKLCDNFNK-GSCTFGDRCHFAHGESELR 200 S +KT+LC F + G+C +GD+C FAHG ELR Sbjct: 113 SRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145 Score = 36.2 bits (82), Expect = 0.097 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = -1 Query: 289 FKTKLCDNFNK-GSCTFGDRCHFAHGESELRKSA 191 +KT+LC F+ G C +G RCHF H E R A Sbjct: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRALA 186
>TISB_HUMAN (Q07352) Butyrate response factor 1 (TIS11B protein) (EGF-response| factor 1) (ERF-1) Length = 338 Score = 42.0 bits (97), Expect = 0.002 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = -1 Query: 295 SNFKTKLCDNFNK-GSCTFGDRCHFAHGESELR 200 S +KT+LC F + G+C +GD+C FAHG ELR Sbjct: 113 SRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145 Score = 37.7 bits (86), Expect = 0.033 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = -1 Query: 289 FKTKLCDNFNK-GSCTFGDRCHFAHGESELRKSAAA 185 +KT+LC F+ G C +G RCHF H E R A A Sbjct: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRALAGA 188
>FUBP3_HUMAN (Q96I24) Far upstream element-binding protein 3 (FUSE-binding| protein 3) Length = 572 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Frame = -1 Query: 553 SVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDN---EADPNHKNIELEGSFDQVNHASA 383 +V A G +IGKGG N K I++ +GA + ++ N +DPN + + G Q+ A Sbjct: 360 TVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVARQ 419 Query: 382 MVKELILRIGG 350 ++ E ++GG Sbjct: 420 LIDE---KVGG 427 Score = 36.6 bits (83), Expect = 0.074 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = -1 Query: 571 SATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPN--HKNIELEGSFDQV 398 S +I + AS G +IG+GG K + TG K+ + + P K + + G +V Sbjct: 162 STIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDAFKV 221 Query: 397 NHASAMVKELI 365 A MV E+I Sbjct: 222 QQAREMVLEII 232 Score = 35.0 bits (79), Expect = 0.22 Identities = 17/66 (25%), Positives = 33/66 (50%) Frame = -1 Query: 559 KISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQVNHASAM 380 ++SV G +IG+ G K I G ++ + ++ + ++ G D+ HA+ + Sbjct: 257 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHI 316 Query: 379 VKELIL 362 + ELIL Sbjct: 317 ISELIL 322 Score = 31.2 bits (69), Expect = 3.1 Identities = 16/69 (23%), Positives = 31/69 (44%) Frame = -1 Query: 565 TAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQVNHAS 386 T + V + G IIG+GG I +G K+ I + + L G+ + + A Sbjct: 79 TEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAK 138 Query: 385 AMVKELILR 359 ++ +++ R Sbjct: 139 RLLGQIVDR 147
>CTH1_YEAST (P47976) Zinc finger protein CTH1| Length = 325 Score = 41.2 bits (95), Expect = 0.003 Identities = 16/31 (51%), Positives = 25/31 (80%), Gaps = 1/31 (3%) Frame = -1 Query: 289 FKTKLCDNFN-KGSCTFGDRCHFAHGESELR 200 +KT+LC++F KG C +G++C FAHG +EL+ Sbjct: 205 YKTELCESFTIKGYCKYGNKCQFAHGLNELK 235 Score = 35.0 bits (79), Expect = 0.22 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%) Frame = -1 Query: 295 SNFKTKLCDNFNK-GSCTFGDRCHFAHGESE 206 +N++TK C N++K G C +G RC F HG+ + Sbjct: 241 NNYRTKPCINWSKLGYCPYGKRCCFKHGDDK 271
>TIS1_DROME (P47980) Protein TIS11 (dTIS11)| Length = 436 Score = 41.2 bits (95), Expect = 0.003 Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%) Frame = -1 Query: 295 SNFKTKLCDNFNK-GSCTFGDRCHFAHGESELR 200 S +KT+LC F + G C +G++C FAHG ELR Sbjct: 134 SRYKTELCRPFEEAGECKYGEKCQFAHGSHELR 166 Score = 37.4 bits (85), Expect = 0.044 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = -1 Query: 289 FKTKLCDNFNK-GSCTFGDRCHFAHGESELRKSAAA 185 +KT+ C F+ G C +G RCHF H E R AA Sbjct: 174 YKTEYCRTFHSVGFCPYGPRCHFVHNADEARAQQAA 209
>PIE1_CAEEL (Q94131) Pharynx and intestine in excess protein 1 (Protein pie-1)| Length = 335 Score = 40.8 bits (94), Expect = 0.004 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%) Frame = -1 Query: 295 SNFKTKLCDNFNK-GSCTFGDRCHFAHGESELR 200 + +KT+LCD F + G C + D C +AHG+ ELR Sbjct: 97 TEYKTRLCDAFRREGYCPYNDNCTYAHGQDELR 129 Score = 35.4 bits (80), Expect = 0.17 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -1 Query: 295 SNFKTKLCDNFNKGSCTFGDRCHFAHGE 212 S+ + ++C NF +G+C +G RC F H E Sbjct: 183 SSNRRQICHNFERGNCRYGPRCRFIHVE 210
>TTP_BOVIN (P53781) Tristetraproline (TTP) (Zinc finger protein 36 homolog)| (Zfp-36) (TIS11A protein) (TIS11) Length = 324 Score = 40.8 bits (94), Expect = 0.004 Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 1/36 (2%) Frame = -1 Query: 295 SNFKTKLCDNFNK-GSCTFGDRCHFAHGESELRKSA 191 S +KT+LC F++ G C +G +C FAHG ELR+++ Sbjct: 100 SRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQAS 135 Score = 37.0 bits (84), Expect = 0.057 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Frame = -1 Query: 289 FKTKLCDNFN-KGSCTFGDRCHFAHGESE 206 +KT+LC F +G C +G RCHF H SE Sbjct: 140 YKTELCHKFYLQGRCPYGSRCHFIHNPSE 168
>ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2| Length = 769 Score = 40.8 bits (94), Expect = 0.004 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Frame = -1 Query: 553 SVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDN---EADPNHKNIELEGSFDQVNHASA 383 S+ G +IG+GG N K I++ GA + I DPN K + GS Q+ HA Sbjct: 492 SIPTHKCGLVIGRGGENVKAINQQRGAFVEISRQLPPNGDPNFKLFIIRGSPQQIEHAKQ 551 Query: 382 MVKELI 365 ++E I Sbjct: 552 PIEEKI 557 Score = 40.4 bits (93), Expect = 0.005 Identities = 22/79 (27%), Positives = 38/79 (48%) Frame = -1 Query: 571 SATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQVNH 392 + T + V + G IIG+GG I + +G K+ I + +++ L GS + V Sbjct: 208 TVTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGSPEAVQK 267 Query: 391 ASAMVKELILRIGGNAPPQ 335 A M+ +++ R G P Q Sbjct: 268 AKLMLDDIVSRGRGGPPGQ 286 Score = 34.3 bits (77), Expect = 0.37 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Frame = -1 Query: 559 KISVDASLAGAIIGKGGVNTKHISRMTGAKLA-IRDNEADPN-HKNIELEGSFDQVNHAS 386 +I + A AG +IGKGG K + G K+ I+D + N K + + G +V A Sbjct: 300 EIMIPAGKAGLVIGKGGETIKQLQERAGVKMIFIQDGSQNTNVDKPLRIIGDPYKVQQAC 359 Query: 385 AMVKELI 365 MV +++ Sbjct: 360 EMVMDIL 366
>FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUSE-binding| protein 2) (KH type splicing regulatory protein) (KSRP) (p75) Length = 707 Score = 40.4 bits (93), Expect = 0.005 Identities = 22/79 (27%), Positives = 38/79 (48%) Frame = -1 Query: 571 SATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQVNH 392 S T + V + G IIG+GG I + +G K+ I + +++ L G+ + V Sbjct: 144 SMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQK 203 Query: 391 ASAMVKELILRIGGNAPPQ 335 A M+ +++ R G P Q Sbjct: 204 AKMMLDDIVSRGRGGPPGQ 222 Score = 38.9 bits (89), Expect = 0.015 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 3/75 (4%) Frame = -1 Query: 580 FGASATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDN---EADPNHKNIELEGS 410 +G S+ G +IG+GG N K I++ TGA + I P K + GS Sbjct: 419 WGPGGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPTGTPTSKLFIIRGS 478 Query: 409 FDQVNHASAMVKELI 365 Q++H +++E I Sbjct: 479 PQQIDHCRQLIEEKI 493 Score = 34.7 bits (78), Expect = 0.28 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Frame = -1 Query: 559 KISVDASLAGAIIGKGGVNTKHISRMTGAK-LAIRDNEADPN-HKNIELEGSFDQVNHAS 386 +I + A AG +IGKGG K + G K + I+D + N K + + G +V A Sbjct: 237 EIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQAC 296 Query: 385 AMVKELILRI 356 MV +++ + Sbjct: 297 EMVMDILRNV 306
>TTP_HUMAN (P26651) Tristetraproline (TTP) (Zinc finger protein 36 homolog)| (Zfp-36) (TIS11A protein) (TIS11) (Growth factor-inducible nuclear protein NUP475) (G0/G1 switch regulatory protein 24) Length = 326 Score = 40.4 bits (93), Expect = 0.005 Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 1/35 (2%) Frame = -1 Query: 295 SNFKTKLCDNFNK-GSCTFGDRCHFAHGESELRKS 194 S +KT+LC F++ G C +G +C FAHG ELR++ Sbjct: 102 SRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQA 136 Score = 37.0 bits (84), Expect = 0.057 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Frame = -1 Query: 289 FKTKLCDNFN-KGSCTFGDRCHFAHGESE 206 +KT+LC F +G C +G RCHF H SE Sbjct: 142 YKTELCHKFYLQGRCPYGSRCHFIHNPSE 170
>TTP_SHEEP (Q6S9E0) Tristetraproline (TTP) (Zinc finger protein 36 homolog)| (Zfp-36) Length = 325 Score = 40.0 bits (92), Expect = 0.007 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Frame = -1 Query: 295 SNFKTKLCDNFNK-GSCTFGDRCHFAHGESELRK 197 S +KT+LC F++ G C +G +C FAHG ELR+ Sbjct: 100 SRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQ 133 Score = 37.0 bits (84), Expect = 0.057 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Frame = -1 Query: 289 FKTKLCDNFN-KGSCTFGDRCHFAHGESE 206 +KT+LC F +G C +G RCHF H SE Sbjct: 140 YKTELCHKFYLQGRCPYGSRCHFIHNPSE 168
>TTP_RAT (P47973) Tristetraproline (TTP) (Zinc finger protein 36) (Zfp-36)| (TIS11A protein) (TIS11) Length = 320 Score = 40.0 bits (92), Expect = 0.007 Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%) Frame = -1 Query: 295 SNFKTKLCDNFNK-GSCTFGDRCHFAHGESELRKS 194 S +KT+LC +++ G C +G +C FAHG ELR++ Sbjct: 95 SRYKTELCRTYSESGRCRYGAKCQFAHGPGELRQA 129 Score = 35.8 bits (81), Expect = 0.13 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Frame = -1 Query: 289 FKTKLCDNFN-KGSCTFGDRCHFAHGESE 206 +KT+LC F +G C +G RCHF H +E Sbjct: 135 YKTELCHKFYLQGRCPYGSRCHFIHNPTE 163
>TTP_MOUSE (P22893) Tristetraproline (TTP) (Zinc finger protein 36) (Zfp-36)| (TIS11A protein) (TIS11) (Growth factor-inducible nuclear protein NUP475) (TPA-induced sequence 11) Length = 319 Score = 39.3 bits (90), Expect = 0.011 Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%) Frame = -1 Query: 295 SNFKTKLCDNFNK-GSCTFGDRCHFAHGESELRKS 194 S +KT+LC +++ G C +G +C FAHG ELR++ Sbjct: 94 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA 128 Score = 35.8 bits (81), Expect = 0.13 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Frame = -1 Query: 289 FKTKLCDNFN-KGSCTFGDRCHFAHGESE 206 +KT+LC F +G C +G RCHF H +E Sbjct: 134 YKTELCHKFYLQGRCPYGSRCHFIHNPTE 162
>TISD_MOUSE (P23949) Butyrate response factor 2 (TIS11D protein)| Length = 367 Score = 39.3 bits (90), Expect = 0.011 Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = -1 Query: 295 SNFKTKLCDNFNK-GSCTFGDRCHFAHGESELR 200 + +KT+LC F + G+C +G++C FAHG ELR Sbjct: 125 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELR 157 Score = 35.8 bits (81), Expect = 0.13 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = -1 Query: 289 FKTKLCDNFNK-GSCTFGDRCHFAHGESELR 200 +KT+LC F+ G C +G RCHF H E R Sbjct: 165 YKTELCRTFHTIGFCPYGPRCHFIHNADERR 195
>TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) (EGF-response| factor 2) (ERF-2) Length = 492 Score = 39.3 bits (90), Expect = 0.011 Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = -1 Query: 295 SNFKTKLCDNFNK-GSCTFGDRCHFAHGESELR 200 + +KT+LC F + G+C +G++C FAHG ELR Sbjct: 152 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELR 184 Score = 35.8 bits (81), Expect = 0.13 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = -1 Query: 289 FKTKLCDNFNK-GSCTFGDRCHFAHGESELR 200 +KT+LC F+ G C +G RCHF H E R Sbjct: 192 YKTELCRTFHTIGFCPYGPRCHFIHNADERR 222
>MEX6_CAEEL (Q09436) Zinc finger protein mex-6| Length = 467 Score = 37.7 bits (86), Expect = 0.033 Identities = 19/35 (54%), Positives = 20/35 (57%), Gaps = 2/35 (5%) Frame = -1 Query: 292 NFKTKLCDNFNKG--SCTFGDRCHFAHGESELRKS 194 NFKT+LC G C G RC FAHG ELR S Sbjct: 273 NFKTRLCMTHAAGINPCALGARCKFAHGLKELRAS 307 Score = 33.9 bits (76), Expect = 0.48 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%) Frame = -1 Query: 295 SNFKTKLCDNFNKGS---CTFGDRCHFAH 218 + +KTKLC NF +G C +G RC F H Sbjct: 316 NKYKTKLCKNFARGGSGVCPYGLRCEFVH 344
>ZFS1_SCHPO (P47979) Zinc-finger protein zfs1| Length = 404 Score = 37.4 bits (85), Expect = 0.044 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = -1 Query: 289 FKTKLCDNFN-KGSCTFGDRCHFAHGESELRK 197 +KT+ C N+ G+C +G +C FAHG EL++ Sbjct: 327 YKTEPCKNWQISGTCRYGSKCQFAHGNQELKE 358 Score = 31.2 bits (69), Expect = 3.1 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = -1 Query: 289 FKTKLCDNFNK-GSCTFGDRCHFAHGESELRKSA 191 +K++ C +F G C +G RC F H ES +KSA Sbjct: 365 YKSERCRSFMMYGYCPYGLRCCFLHDESNAQKSA 398
>NOVA1_MOUSE (Q9JKN6) RNA-binding protein Nova-1 (Neuro-oncological ventral| antigen 1) (Ventral neuron-specific protein 1) (Fragment) Length = 493 Score = 36.6 bits (83), Expect = 0.074 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Frame = -1 Query: 586 STFGASATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAI-RDNEADPNHKN 428 ST G+ +I+V +L GAI+GKGG +TGA++ I + E P +N Sbjct: 402 STDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRN 455 Score = 31.2 bits (69), Expect = 3.1 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Frame = -1 Query: 559 KISVDASLAGAIIGKGGVNTKHISRMTGA--KLAIRDNEADPNHKNIELEGSFDQVNHAS 386 KI V S AG IIGKGG K I +GA +L+ + + + + + + G +Q A Sbjct: 161 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAV 220 Query: 385 AMVKELI 365 ++ + I Sbjct: 221 ELIIQKI 227 Score = 31.2 bits (69), Expect = 3.1 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Frame = -1 Query: 559 KISVDASLAGAIIGKGGVNTKHISRMTGAKLAI---RDNEADPNHKNIELEGSFDQVNHA 389 K+ + + AG+IIGKGG + + TGA + + +D + ++G+ + +N Sbjct: 39 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAV 98 Query: 388 SAMVKELILRIGGN 347 + E I + N Sbjct: 99 HGFIAEKIREMPQN 112
>NOVA1_HUMAN (P51513) RNA-binding protein Nova-1 (Neuro-oncological ventral| antigen 1) (Onconeural ventral antigen 1) (Paraneoplastic Ri antigen) (Ventral neuron-specific protein 1) Length = 510 Score = 36.6 bits (83), Expect = 0.074 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Frame = -1 Query: 586 STFGASATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAI-RDNEADPNHKN 428 ST G+ +I+V +L GAI+GKGG +TGA++ I + E P +N Sbjct: 419 STDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRN 472 Score = 30.8 bits (68), Expect = 4.1 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Frame = -1 Query: 559 KISVDASLAGAIIGKGGVNTKHISRMTGA--KLAIRDNEADPNHKNIELEGSFDQVNHAS 386 KI V S AG IIGKGG K + +GA +L+ + + + + + + G +Q A Sbjct: 178 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAV 237 Query: 385 AMVKELI 365 ++ + I Sbjct: 238 ELIIQKI 244 Score = 29.6 bits (65), Expect = 9.1 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Frame = -1 Query: 559 KISVDASLAGAIIGKGGVNTKHISRMTGAKLAI------RDNEADPNHKNIELEGSFDQV 398 K+ + + AG+IIGKGG + + TGA + + +D + ++G+ + + Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCLIQGTVEAL 112 Query: 397 NHASAMVKELILRIGGN 347 N + E I + N Sbjct: 113 NAVHGFIAEKIREMPQN 129
>NOVA1_RAT (Q80WA4) RNA-binding protein Nova-1 (Neuro-oncological ventral| antigen 1) (Fragment) Length = 474 Score = 36.6 bits (83), Expect = 0.074 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Frame = -1 Query: 586 STFGASATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAI-RDNEADPNHKN 428 ST G+ +I+V +L GAI+GKGG +TGA++ I + E P +N Sbjct: 391 STDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRN 444 Score = 31.2 bits (69), Expect = 3.1 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Frame = -1 Query: 559 KISVDASLAGAIIGKGGVNTKHISRMTGA--KLAIRDNEADPNHKNIELEGSFDQVNHAS 386 KI V S AG IIGKGG K I +GA +L+ + + + + + + G +Q A Sbjct: 150 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAV 209 Query: 385 AMVKELI 365 ++ + I Sbjct: 210 ELIIQKI 216 Score = 31.2 bits (69), Expect = 3.1 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Frame = -1 Query: 559 KISVDASLAGAIIGKGGVNTKHISRMTGAKLAI---RDNEADPNHKNIELEGSFDQVNHA 389 K+ + + AG+IIGKGG + + TGA + + +D + ++G+ + +N Sbjct: 52 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAV 111 Query: 388 SAMVKELILRIGGN 347 + E I + N Sbjct: 112 HGFIAEKIREMPQN 125
>MEX5_CAEEL (Q9XUB2) Zinc finger protein mex-5| Length = 468 Score = 35.4 bits (80), Expect = 0.17 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = -1 Query: 292 NFKTKLCDNFNKG--SCTFGDRCHFAHGESELRKSAA 188 N+KT+LC G C G RC FAHG ELR + A Sbjct: 270 NYKTRLCMMHASGIKPCDMGARCKFAHGLKELRATDA 306 Score = 33.9 bits (76), Expect = 0.48 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%) Frame = -1 Query: 295 SNFKTKLCDNFNKGS---CTFGDRCHFAH 218 + +KTKLC NF +G C +G RC F H Sbjct: 313 NKYKTKLCKNFARGGTGFCPYGLRCEFVH 341
>PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)| Length = 356 Score = 35.0 bits (79), Expect = 0.22 Identities = 16/63 (25%), Positives = 35/63 (55%) Frame = -1 Query: 565 TAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQVNHAS 386 T ++++ +L G IIG+ G N I +M+GA++ I + + + + + GS ++ A Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQ 340 Query: 385 AMV 377 ++ Sbjct: 341 YLI 343 Score = 32.3 bits (72), Expect = 1.4 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = -1 Query: 565 TAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAI 461 T ++ V A+ G++IGKGG K I TGA++ + Sbjct: 99 TLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133 Score = 30.4 bits (67), Expect = 5.3 Identities = 20/70 (28%), Positives = 35/70 (50%) Frame = -1 Query: 586 STFGASATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSF 407 S + T ++ + G+IIGK G + K I +GA++ I +E + + I L G Sbjct: 8 SGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLTGPT 65 Query: 406 DQVNHASAMV 377 + + A AM+ Sbjct: 66 NAIFKAFAMI 75
>PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)| Length = 356 Score = 35.0 bits (79), Expect = 0.22 Identities = 16/63 (25%), Positives = 35/63 (55%) Frame = -1 Query: 565 TAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQVNHAS 386 T ++++ +L G IIG+ G N I +M+GA++ I + + + + + GS ++ A Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQ 340 Query: 385 AMV 377 ++ Sbjct: 341 YLI 343 Score = 32.3 bits (72), Expect = 1.4 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = -1 Query: 565 TAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAI 461 T ++ V A+ G++IGKGG K I TGA++ + Sbjct: 99 TLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133 Score = 30.4 bits (67), Expect = 5.3 Identities = 20/70 (28%), Positives = 35/70 (50%) Frame = -1 Query: 586 STFGASATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSF 407 S + T ++ + G+IIGK G + K I +GA++ I +E + + I L G Sbjct: 8 SGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLTGPT 65 Query: 406 DQVNHASAMV 377 + + A AM+ Sbjct: 66 NAIFKAFAMI 75
>PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1) (Nucleic| acid-binding protein SUB2.3) Length = 356 Score = 35.0 bits (79), Expect = 0.22 Identities = 16/63 (25%), Positives = 35/63 (55%) Frame = -1 Query: 565 TAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQVNHAS 386 T ++++ +L G IIG+ G N I +M+GA++ I + + + + + GS ++ A Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQ 340 Query: 385 AMV 377 ++ Sbjct: 341 YLI 343 Score = 32.3 bits (72), Expect = 1.4 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = -1 Query: 565 TAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAI 461 T ++ V A+ G++IGKGG K I TGA++ + Sbjct: 99 TLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133 Score = 30.4 bits (67), Expect = 5.3 Identities = 20/70 (28%), Positives = 35/70 (50%) Frame = -1 Query: 586 STFGASATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSF 407 S + T ++ + G+IIGK G + K I +GA++ I +E + + I L G Sbjct: 8 SGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLTGPT 65 Query: 406 DQVNHASAMV 377 + + A AM+ Sbjct: 66 NAIFKAFAMI 75
>Z3H7A_HUMAN (Q8IWR0) Zinc finger CCCH-type domain-containing protein 7A| Length = 971 Score = 35.0 bits (79), Expect = 0.22 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -1 Query: 277 LCDNFNKGSCTFGDRCHFAHGESELRK 197 +CD + G+C G+ C FAHG +EL + Sbjct: 906 ICDRYMNGTCPEGNSCKFAHGNAELHE 932
>PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)| Length = 365 Score = 34.7 bits (78), Expect = 0.28 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Frame = -1 Query: 565 TAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIR-DNEADPNHKNIELEGSFDQVNHA 389 T ++ V AS G++IGKGG K I TGA++ + D + + I + G + Sbjct: 99 TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIEC 158 Query: 388 SAMVKELILRIGGNAPPQ 335 + ++L +PP+ Sbjct: 159 VKQICVVMLETLSQSPPK 176 Score = 31.2 bits (69), Expect = 3.1 Identities = 14/61 (22%), Positives = 31/61 (50%) Frame = -1 Query: 559 KISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQVNHASAM 380 ++++ L G IIG+ G I +M+GA++ I + + + + GS ++ A + Sbjct: 291 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYL 350 Query: 379 V 377 + Sbjct: 351 I 351
>NOVA2_HUMAN (Q9UNW9) RNA-binding protein Nova-2 (Neuro-oncological ventral| antigen 2) (Astrocytic NOVA1-like RNA-binding protein) Length = 492 Score = 34.7 bits (78), Expect = 0.28 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Frame = -1 Query: 562 AKISVDASLAGAIIGKGGVNTKHISRMTGA--KLAIRDNEADPNHKNIELEGSFDQVNHA 389 AK+ V S AG IIGKGG K + +GA +L+ + + + + + G +QV+ A Sbjct: 133 AKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKA 192 Query: 388 -SAMVKEL 368 SA+V+++ Sbjct: 193 VSAIVQKV 200 Score = 33.1 bits (74), Expect = 0.82 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Frame = -1 Query: 574 ASATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAI-RDNEADPNHKN--IELEGSFD 404 A +I+V +L GAI+GKGG +TGA++ I + E P +N + + GS Sbjct: 405 AKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPA 464 Query: 403 QVNHASAMVKELI 365 A ++ + + Sbjct: 465 ATQAAQYLISQRV 477 Score = 30.4 bits (67), Expect = 5.3 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Frame = -1 Query: 559 KISVDASLAGAIIGKGGVNTKHISRMTGAKLAI---RDNEADPNHKNIELEGSFDQVNHA 389 K+ + + AG+IIGKGG + + TGA + + +D + ++G+ + +N Sbjct: 36 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAV 95 Query: 388 SAMVKELILRI 356 + + E + I Sbjct: 96 HSFIAEKVREI 106
>MNAB_HUMAN (Q9HBD1) Membrane-associated nucleic acid-binding protein (RING| finger protein 164) Length = 1191 Score = 34.3 bits (77), Expect = 0.37 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Frame = -1 Query: 445 DPNHKNIELEGSFDQVNHASAMVKELILRIGGNAPPQAKNXXXXXXXXXGSNFKTKLC-D 269 DPN + +++Q+ +A VK ++ + ++ S +KT +C D Sbjct: 361 DPNPDAVS--PTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRD 418 Query: 268 NFNKGSCTFGDRCHFAHGESELRK 197 +G C G C FAH + EL K Sbjct: 419 LRQQGGCPRGTNCTFAHSQEELEK 442
>Z3H7B_HUMAN (Q9UGR2) Zinc finger CCCH-type domain-containing protein 7B| (Rotavirus 'X'-associated non-structural protein) (RoXaN) Length = 993 Score = 34.3 bits (77), Expect = 0.37 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Frame = -1 Query: 280 KLCDNFNKG-SCTFGDRCHFAHGESELRK 197 +LCD KG +C GD+C AHG+ EL + Sbjct: 906 RLCDRLQKGKACPDGDKCRCAHGQEELNE 934
>MNAB_MOUSE (P0C090) Membrane-associated nucleic acid binding protein| Length = 1187 Score = 34.3 bits (77), Expect = 0.37 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Frame = -1 Query: 445 DPNHKNIELEGSFDQVNHASAMVKELILRIGGNAPPQAKNXXXXXXXXXGSNFKTKLC-D 269 DPN + +++Q+ +A VK ++ + ++ S +KT +C D Sbjct: 361 DPNPDAVS--PTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRD 418 Query: 268 NFNKGSCTFGDRCHFAHGESELRK 197 +G C G C FAH + EL K Sbjct: 419 LRQQGGCPRGTNCTFAHSQEELEK 442
>PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)| Length = 339 Score = 33.9 bits (76), Expect = 0.48 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Frame = -1 Query: 565 TAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIR-DNEADPNHKNIELEGSFDQV 398 T ++ V AS G++IGKGG K I TGA++ + D + + + + G+ D + Sbjct: 99 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAI 155 Score = 32.7 bits (73), Expect = 1.1 Identities = 15/65 (23%), Positives = 35/65 (53%) Frame = -1 Query: 571 SATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQVNH 392 ++T ++++ L G IIG+ G I +M+GA++ I + + + I + G+ ++ Sbjct: 261 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 320 Query: 391 ASAMV 377 A ++ Sbjct: 321 AQYLI 325 Score = 30.8 bits (68), Expect = 4.1 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Frame = -1 Query: 565 TAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQVNHAS 386 T ++ + G+IIGK G K + +GA++ I +E + + + + G D + A Sbjct: 15 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINI--SEGNCPERIVTITGPTDAIFKAF 72 Query: 385 AMV----KELILRIGGNAPPQAK 329 AM+ +E I+ N+P +K Sbjct: 73 AMIAYKFEEDIINSMSNSPATSK 95
>PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)| Length = 339 Score = 33.9 bits (76), Expect = 0.48 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Frame = -1 Query: 565 TAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIR-DNEADPNHKNIELEGSFDQV 398 T ++ V AS G++IGKGG K I TGA++ + D + + + + G+ D + Sbjct: 99 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAI 155 Score = 32.7 bits (73), Expect = 1.1 Identities = 15/65 (23%), Positives = 35/65 (53%) Frame = -1 Query: 571 SATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQVNH 392 ++T ++++ L G IIG+ G I +M+GA++ I + + + I + G+ ++ Sbjct: 261 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 320 Query: 391 ASAMV 377 A ++ Sbjct: 321 AQYLI 325 Score = 30.8 bits (68), Expect = 4.1 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Frame = -1 Query: 565 TAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQVNHAS 386 T ++ + G+IIGK G K + +GA++ I +E + + + + G D + A Sbjct: 15 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINI--SEGNCPERIVTITGPTDAIFKAF 72 Query: 385 AMV----KELILRIGGNAPPQAK 329 AM+ +E I+ N+P +K Sbjct: 73 AMIAYKFEEDIINSMSNSPATSK 95
>SC160_YEAST (P06105) Protein SCP160 (Protein HX)| Length = 1222 Score = 33.9 bits (76), Expect = 0.48 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 8/81 (9%) Frame = -1 Query: 562 AKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIR--------DNEADPNHKNIELEGSF 407 A I V + +IIG GG + IS K+ + D + D N+ L G F Sbjct: 180 AVIEVPSKCKASIIGSGGRTIREISDAYEVKINVSKEVNENSYDEDMDDTTSNVSLFGDF 239 Query: 406 DQVNHASAMVKELILRIGGNA 344 + VN A A + ++ NA Sbjct: 240 ESVNLAKAKILAIVKEETKNA 260 Score = 31.2 bits (69), Expect = 3.1 Identities = 21/71 (29%), Positives = 34/71 (47%) Frame = -1 Query: 571 SATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQVNH 392 S T I + A GA+IG GG+ + + L + N+ DP+ K I + G+ + V Sbjct: 939 SVTKTIDIPAERKGALIGPGGIVRRQLESEFNINLFV-PNKDDPSGK-ITITGAPENVEK 996 Query: 391 ASAMVKELILR 359 A + I+R Sbjct: 997 AEKKILNEIIR 1007
>PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Putative| heterogeneous nuclear ribonucleoprotein X) (hnRNP X) (CTBP) (CBP) Length = 362 Score = 33.5 bits (75), Expect = 0.63 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = -1 Query: 565 TAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAI 461 T ++ V AS G++IGKGG K I TGA++ + Sbjct: 99 TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133 Score = 31.2 bits (69), Expect = 3.1 Identities = 14/61 (22%), Positives = 31/61 (50%) Frame = -1 Query: 559 KISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQVNHASAM 380 ++++ L G IIG+ G I +M+GA++ I + + + + GS ++ A + Sbjct: 288 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYL 347 Query: 379 V 377 + Sbjct: 348 I 348
>MKRN1_HUMAN (Q9UHC7) Makorin-1 (RING finger protein 61)| Length = 482 Score = 33.1 bits (74), Expect = 0.82 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = -1 Query: 277 LCDNFNKGSCTFGDRCHFAHGESELRKSAAA*EM 176 +C F +G C +GDRC + H + ++ A A E+ Sbjct: 89 VCKYFQRGYCIYGDRCRYEHSKPLKQEEATATEL 122
>DHAQ_ACEPO (P17201) Membrane-bound aldehyde dehydrogenase| [pyrroloquinoline-quinone] precursor (EC 1.2.99.3) (ALDH) Length = 773 Score = 32.7 bits (73), Expect = 1.1 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = +2 Query: 593 NHVRARHRWGLEVTIGSWSHWRCH*VVQQHGLA 691 N+V +WGL VT GSWS W V +Q G A Sbjct: 109 NYVDTDPKWGLMVTGGSWSVWMTWDVFRQAGAA 141
>RC3H1_XENLA (Q6NUC6) Roquin (RING finger and C3H zinc finger protein 1)| Length = 1114 Score = 32.3 bits (72), Expect = 1.4 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = -1 Query: 295 SNFKTKLC-DNFNKGSCTFGDRCHFAHGESELRK 197 S +KT +C D +G C G C FAH + EL K Sbjct: 414 SKYKTYMCRDMKQRGGCPRGASCTFAHSQEELEK 447
>RC3H1_HUMAN (Q5TC82) Roquin (RING finger and C3H zinc finger protein 1)| Length = 1133 Score = 32.3 bits (72), Expect = 1.4 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = -1 Query: 295 SNFKTKLC-DNFNKGSCTFGDRCHFAHGESELRK 197 S +KT +C D +G C G C FAH + EL K Sbjct: 412 SKYKTYMCRDMKQRGGCPRGASCTFAHSQEELEK 445
>RC3H1_MOUSE (Q4VGL6) Roquin (RING finger and C3H zinc finger protein 1)| (Sanroque protein) Length = 1130 Score = 32.3 bits (72), Expect = 1.4 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = -1 Query: 295 SNFKTKLC-DNFNKGSCTFGDRCHFAHGESELRK 197 S +KT +C D +G C G C FAH + EL K Sbjct: 412 SKYKTYMCRDMKQRGGCPRGASCTFAHSQEELEK 445
>PBP2_YEAST (P38151) PAB1-binding protein 2| Length = 413 Score = 32.3 bits (72), Expect = 1.4 Identities = 13/51 (25%), Positives = 25/51 (49%) Frame = -1 Query: 559 KISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSF 407 +I +D G +IGK G + + TG + I+D + + + + G+F Sbjct: 334 EIFIDEKFVGNVIGKDGKHINSVKESTGCSIIIQDPVEGSSERRLTIRGTF 384
>CWC24_ASHGO (Q752S4) Pre-mRNA-splicing factor CWC24| Length = 250 Score = 32.0 bits (71), Expect = 1.8 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 9/75 (12%) Frame = -1 Query: 397 NHASAMVKELILRIGGNAPPQAKNXXXXXXXXXGSNFKTKL--------CDNFNK-GSCT 245 +H SA +E + R +AP + + GSN +T++ C ++ + G C Sbjct: 59 DHVSAGTQEAVARATDDAPDR-RAESSGARTAVGSNVRTRVVMDYQPDVCKDYRQTGFCG 117 Query: 244 FGDRCHFAHGESELR 200 +GD C F H + R Sbjct: 118 YGDSCKFLHSRDDFR 132
>Y1533_METJA (Q58928) Hypothetical protein MJ1533| Length = 642 Score = 32.0 bits (71), Expect = 1.8 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = -1 Query: 532 GAIIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQVN 395 GAIIGKGG + M G K+++++ E + + ++ VN Sbjct: 523 GAIIGKGGKEISKLEDMLGLKISVKEKEKEEEKDMERIYRKYEYVN 568
>MKRN4_HUMAN (Q13434) Makorin-4 (Zinc finger protein 127-Xp) (ZNF127-Xp) (RING| finger protein 64) Length = 485 Score = 32.0 bits (71), Expect = 1.8 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -1 Query: 277 LCDNFNKGSCTFGDRCHFAHGESELRKSAAA*EM 176 +C F +G C +GDRC H + ++ A A E+ Sbjct: 124 VCKYFQRGCCVYGDRCRCEHSKPLKQEEATATEL 157
>RN113_CAEEL (O17917) Putative RING finger protein 113 homolog| Length = 384 Score = 31.6 bits (70), Expect = 2.4 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = -1 Query: 292 NFKTKLCDNFNK-GSCTFGDRCHFAHGESELR 200 +F +C ++ + G CTFGD C F H S+ + Sbjct: 175 DFAPDICKDYKETGFCTFGDSCKFVHDRSDYK 206
>TRM1_HUMAN (Q9NXH9) N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC| 2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA 2,2-dimethylguanosine-26 methyltransferase) (tRNA(m(2,2)G26)dimethyltransferase) Length = 659 Score = 31.6 bits (70), Expect = 2.4 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -1 Query: 295 SNFKTKLCDNFNKGSCTFGDRCHFAHGESELRKSAAA 185 + KT C F +G+C GD+C ++H R SA A Sbjct: 599 ARLKTFPCKRFKEGTCQRGDQCCYSHSPPTPRVSADA 635
>MKRN1_MACEU (Q9TT91) Makorin-1| Length = 478 Score = 31.6 bits (70), Expect = 2.4 Identities = 16/62 (25%), Positives = 29/62 (46%) Frame = -1 Query: 277 LCDNFNKGSCTFGDRCHFAHGESELRKSAAA*EMLFFHGFS*LIVISKSELRSRSPMVIL 98 +C + +G C +GDRC + H + R+ A + +KS+L + S + L Sbjct: 85 VCRYYQRGCCAYGDRCRYEHTKPLKREEVTAANL-----------AAKSDLPASSSLPAL 133 Query: 97 IE 92 +E Sbjct: 134 VE 135
>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7| Length = 1303 Score = 31.2 bits (69), Expect = 3.1 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = -1 Query: 277 LCDNFNKGSCTFGDRCHFAH 218 +C F +G CT+GD C+F+H Sbjct: 395 ICKYFVEGRCTWGDHCNFSH 414
>MKRN2_BRARE (Q9DFG8) Makorin-2| Length = 414 Score = 31.2 bits (69), Expect = 3.1 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -1 Query: 277 LCDNFNKGSCTFGDRCHFAHGESELRKSAA 188 +C + +G+C +GDRC + H + R S A Sbjct: 36 ICKYYQRGACAYGDRCRYDHIKPPGRGSGA 65
>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 31.2 bits (69), Expect = 3.1 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = -1 Query: 277 LCDNFNKGSCTFGDRCHFAH 218 +C F +G CT+GD C+F+H Sbjct: 394 ICKYFVEGRCTWGDHCNFSH 413
>PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)| Length = 403 Score = 31.2 bits (69), Expect = 3.1 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -1 Query: 565 TAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAI 461 T ++ + AS G++IGK G K I TGA++ + Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV 137
>PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)| Length = 403 Score = 31.2 bits (69), Expect = 3.1 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -1 Query: 565 TAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAI 461 T ++ + AS G++IGK G K I TGA++ + Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV 137
>EBNA6_EBV (P03204) Epstein-Barr nuclear antigen 6 (EBV nuclear antigen 6)| (EBNA-6) (EBNA-3C) (EBNA-4B) Length = 992 Score = 30.8 bits (68), Expect = 4.1 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 14/40 (35%) Frame = -3 Query: 539 PCWRHYWEGWSQ-------------HKAHIPNDW-GQAGH 462 PC+RH W WSQ H+P W G AGH Sbjct: 803 PCYRHPWAPWSQDPVHGHTQGPWDPRAPHLPPQWDGSAGH 842
>MKRN1_MOUSE (Q9QXP6) Makorin-1| Length = 481 Score = 30.8 bits (68), Expect = 4.1 Identities = 9/22 (40%), Positives = 14/22 (63%) Frame = -1 Query: 277 LCDNFNKGSCTFGDRCHFAHGE 212 +C F +G C +GDRC + H + Sbjct: 89 VCKYFQRGYCVYGDRCRYEHSK 110
>BIRC6_HUMAN (Q9NR09) Baculoviral IAP repeat-containing protein 6| (Ubiquitin-conjugating BIR-domain enzyme apollon) Length = 4829 Score = 30.8 bits (68), Expect = 4.1 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = -3 Query: 545 CIPCWRHYWEGWSQHKAHIPN 483 C+ CW E WS+H+ H PN Sbjct: 306 CLVCWEPTDEPWSEHERHSPN 326
>CWC24_KLULA (Q6CSS6) Pre-mRNA-splicing factor CWC24| Length = 229 Score = 30.8 bits (68), Expect = 4.1 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = -1 Query: 361 RIGGNAPPQAKNXXXXXXXXXGSNFKTKLCDNFNK-GSCTFGDRCHFAHGESEL 203 ++ G P +KN ++++ +C +F K G C +GD C F H ++ Sbjct: 91 KVSGFVKPVSKNMKTVTI----TDYQPDICKDFQKTGYCGYGDSCKFLHSRDDV 140
>TRM1_MOUSE (Q3TX08) N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC| 2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA 2,2-dimethylguanosine-26 methyltransferase) (tRNA(m(2,2)G26)dimethyltransferase) Length = 663 Score = 30.0 bits (66), Expect = 7.0 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = -1 Query: 295 SNFKTKLCDNFNKGSCTFGDRCHFAH 218 + KT C F +G+C GD+C ++H Sbjct: 598 ARLKTFPCKRFKEGTCQLGDQCCYSH 623
>TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein| Length = 606 Score = 30.0 bits (66), Expect = 7.0 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Frame = -1 Query: 583 TFGASATAKISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPN---HKNIELEG 413 T + ++SV G IIG+GG + I + +GAK+ D E++ + I++ G Sbjct: 120 TENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITC-DKESEGTLLLSRLIKISG 178 Query: 412 SFDQVNHASAMVKELI 365 + +V A ++ E + Sbjct: 179 TQKEVAAAKHLILEKV 194
>PAX8_CANFA (P47240) Paired box protein Pax-8| Length = 459 Score = 29.6 bits (65), Expect = 9.1 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = -2 Query: 522 LGRVESTQSTYPE*LGPSWPSGIMRQTPTIKTLSSRDRLIRST 394 LGR ST TYP P P I ++TP + + SS + S+ Sbjct: 287 LGRNLSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSS 329
>VIGLN_CHICK (P81021) Vigilin| Length = 1270 Score = 29.6 bits (65), Expect = 9.1 Identities = 17/54 (31%), Positives = 30/54 (55%) Frame = -1 Query: 526 IIGKGGVNTKHISRMTGAKLAIRDNEADPNHKNIELEGSFDQVNHASAMVKELI 365 +IGKGG N + + TGA++ +E D + + I + G+ + V A ++ LI Sbjct: 742 LIGKGGGNIRKVRDNTGARIIFPTSE-DKDQELITIMGTEEAVKEAQKELEALI 794
>TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein| Length = 560 Score = 29.6 bits (65), Expect = 9.1 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%) Frame = -1 Query: 559 KISVDASLAGAIIGKGGVNTKHISRMTGAKLAIRDNEADPN---HKNIELEGSFDQVNHA 389 ++SV G IIG+GG + I + +GAK+ D E++ + I++ G+ +V A Sbjct: 128 QLSVPQRSVGRIIGRGGETIRSICKASGAKITC-DKESEGTLLLSRLIKISGTQKEVAAA 186 Query: 388 SAMVKELI 365 ++ E + Sbjct: 187 KHLILEKV 194
>PAX8_HUMAN (Q06710) Paired box protein Pax-8| Length = 450 Score = 29.6 bits (65), Expect = 9.1 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = -2 Query: 522 LGRVESTQSTYPE*LGPSWPSGIMRQTPTIKTLSSRDRLIRST 394 LGR ST TYP P P I ++TP + + SS + S+ Sbjct: 285 LGRNLSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSS 327 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 107,019,661 Number of Sequences: 219361 Number of extensions: 2313645 Number of successful extensions: 6965 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 6313 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6956 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6882837918 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
