Clone Name | rbasd19b06 |
---|---|
Clone Library Name | barley_pub |
>gb|AY104443.1| Zea mays PCO095642 mRNA sequence Length = 1246 Score = 224 bits (113), Expect = 3e-55 Identities = 239/281 (85%) Strand = Plus / Minus Query: 378 accattgcactggcatggttgacctgatcaaacgatccctcgagctcaatgtttttatgg 437 |||||||| || || || |||| ||| ||||| | |||||||||||| |||||||||||| Sbjct: 837 accattgcgctagcgtgcttgatctggtcaaatgttccctcgagctcgatgtttttatgg 778 Query: 438 ttggggtctgcctcattatcccggatggccagcttggccccagtcattcgggatatgtgc 497 ||||| || ||||| || ||||||||||| | |||||||||||||| ||||||||| ||| Sbjct: 777 ttgggatcagcctcgttgtcccggatggctaacttggccccagtcactcgggatatatgc 718 Query: 498 tttgtgttgactccacccttcccaataatggcgccagcaagggatgcatcaacactgatc 557 ||||||||| |||||||||||||| ||||| ||||||||||||||||| || |||||| Sbjct: 717 tttgtgttggtaccacccttcccaatgatggcaccagcaagggatgcatcgacgctgatc 658 Query: 558 ttggctgtggccgaagcgccaaaggttgagggaggaaccatgtcagggccaggcatcggt 617 ||||||||||| ||||| || || || ||||||||||||||||| ||| |||||| || Sbjct: 657 ttggctgtggcggaagcaccgaatgtggagggaggaaccatgtctgggaaaggcattggc 598 Query: 618 gggggctggaagtgaccattgggtcttggtcccattggagg 658 || ||| |||||| || ||||| | ||| ||||||||||| Sbjct: 597 ggtggcatgaagtgcccgttgggccctggccccattggagg 557 Score = 97.6 bits (49), Expect = 5e-17 Identities = 88/101 (87%) Strand = Plus / Minus Query: 198 ttgcgcagttcactctcaccatgggcaaagtggcatctgtctccaaatgtgcaagagcct 257 |||||||| |||| || |||||||| |||||||| ||||||||||| ||||| |||||| Sbjct: 1029 ttgcgcagctcaccttcgccatgggcgaagtggcacctgtctccaaaggtgcaggagcct 970 Query: 258 ttgttgaagttgtcacacagcttggtcttgaagttgcttcc 298 ||||||||||| || |||| ||||| |||||||||||||| Sbjct: 969 ttgttgaagttctcgcacaatttggttttgaagttgcttcc 929
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 212 bits (107), Expect = 1e-51 Identities = 215/251 (85%) Strand = Plus / Plus Query: 369 agctccttcaccattgcactggcatggttgacctgatcaaacgatccctcgagctcaatg 428 |||||| | ||||| ||||| ||||| |||| ||| ||||| | ||||| ||||| || Sbjct: 24425676 agctccgtgaccatagcactagcatgtttgatctggtcaaatgtaccctcaagctcgata 24425735 Query: 429 tttttatggttggggtctgcctcattatcccggatggccagcttggccccagtcattcgg 488 || || ||||||||| | ||| |||||||||||||| ||||||||||||||||| ||| Sbjct: 24425736 ttcttgaggttggggttggactcgttatcccggatggctagcttggccccagtcatccgg 24425795 Query: 489 gatatgtgctttgtgttgactccacccttcccaataatggcgccagcaagggatgcatca 548 ||||| |||||||||||| ||||||||||||||| || ||||||| |||||||||||| Sbjct: 24425796 gatatatgctttgtgttggttccacccttcccaatgataccgccagccagggatgcatca 24425855 Query: 549 acactgatcttggctgtggccgaagcgccaaaggttgagggaggaaccatgtcagggcca 608 ||||||||||| |||||||| || || |||||||||||||||||||| ||||| |||||| Sbjct: 24425856 acactgatctttgctgtggctgaggcaccaaaggttgagggaggaacgatgtccgggcca 24425915 Query: 609 ggcatcggtgg 619 ||||| ||||| Sbjct: 24425916 ggcattggtgg 24425926 Score = 131 bits (66), Expect = 3e-27 Identities = 93/102 (91%) Strand = Plus / Plus Query: 197 cttgcgcagttcactctcaccatgggcaaagtggcatctgtctccaaatgtgcaagagcc 256 ||||||||| ||||| ||||||||||| || || || ||||||||||| ||||| ||||| Sbjct: 24425504 cttgcgcagctcactttcaccatgggcgaaatgacacctgtctccaaacgtgcaggagcc 24425563 Query: 257 tttgttgaagttgtcacacagcttggtcttgaagttgcttcc 298 |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 24425564 tttgttgaagttctcacacagcttggtcttgaagttgcttcc 24425605 Score = 44.1 bits (22), Expect = 0.61 Identities = 37/42 (88%) Strand = Plus / Plus Query: 647 tcccattggaggtgccattgagttgttcaacagcatgggctt 688 |||||||||| ||| ||||||||||| || |||||| ||||| Sbjct: 24425945 tcccattggatgtggcattgagttgtccagcagcatcggctt 24425986
>dbj|AP003609.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0012B02 Length = 149807 Score = 212 bits (107), Expect = 1e-51 Identities = 215/251 (85%) Strand = Plus / Plus Query: 369 agctccttcaccattgcactggcatggttgacctgatcaaacgatccctcgagctcaatg 428 |||||| | ||||| ||||| ||||| |||| ||| ||||| | ||||| ||||| || Sbjct: 37149 agctccgtgaccatagcactagcatgtttgatctggtcaaatgtaccctcaagctcgata 37208 Query: 429 tttttatggttggggtctgcctcattatcccggatggccagcttggccccagtcattcgg 488 || || ||||||||| | ||| |||||||||||||| ||||||||||||||||| ||| Sbjct: 37209 ttcttgaggttggggttggactcgttatcccggatggctagcttggccccagtcatccgg 37268 Query: 489 gatatgtgctttgtgttgactccacccttcccaataatggcgccagcaagggatgcatca 548 ||||| |||||||||||| ||||||||||||||| || ||||||| |||||||||||| Sbjct: 37269 gatatatgctttgtgttggttccacccttcccaatgataccgccagccagggatgcatca 37328 Query: 549 acactgatcttggctgtggccgaagcgccaaaggttgagggaggaaccatgtcagggcca 608 ||||||||||| |||||||| || || |||||||||||||||||||| ||||| |||||| Sbjct: 37329 acactgatctttgctgtggctgaggcaccaaaggttgagggaggaacgatgtccgggcca 37388 Query: 609 ggcatcggtgg 619 ||||| ||||| Sbjct: 37389 ggcattggtgg 37399 Score = 131 bits (66), Expect = 3e-27 Identities = 93/102 (91%) Strand = Plus / Plus Query: 197 cttgcgcagttcactctcaccatgggcaaagtggcatctgtctccaaatgtgcaagagcc 256 ||||||||| ||||| ||||||||||| || || || ||||||||||| ||||| ||||| Sbjct: 36977 cttgcgcagctcactttcaccatgggcgaaatgacacctgtctccaaacgtgcaggagcc 37036 Query: 257 tttgttgaagttgtcacacagcttggtcttgaagttgcttcc 298 |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 37037 tttgttgaagttctcacacagcttggtcttgaagttgcttcc 37078 Score = 44.1 bits (22), Expect = 0.61 Identities = 37/42 (88%) Strand = Plus / Plus Query: 647 tcccattggaggtgccattgagttgttcaacagcatgggctt 688 |||||||||| ||| ||||||||||| || |||||| ||||| Sbjct: 37418 tcccattggatgtggcattgagttgtccagcagcatcggctt 37459
>dbj|AK103787.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145I17, full insert sequence Length = 3135 Score = 212 bits (107), Expect = 1e-51 Identities = 215/251 (85%) Strand = Plus / Minus Query: 369 agctccttcaccattgcactggcatggttgacctgatcaaacgatccctcgagctcaatg 428 |||||| | ||||| ||||| ||||| |||| ||| ||||| | ||||| ||||| || Sbjct: 2634 agctccgtgaccatagcactagcatgtttgatctggtcaaatgtaccctcaagctcgata 2575 Query: 429 tttttatggttggggtctgcctcattatcccggatggccagcttggccccagtcattcgg 488 || || ||||||||| | ||| |||||||||||||| ||||||||||||||||| ||| Sbjct: 2574 ttcttgaggttggggttggactcgttatcccggatggctagcttggccccagtcatccgg 2515 Query: 489 gatatgtgctttgtgttgactccacccttcccaataatggcgccagcaagggatgcatca 548 ||||| |||||||||||| ||||||||||||||| || ||||||| |||||||||||| Sbjct: 2514 gatatatgctttgtgttggttccacccttcccaatgataccgccagccagggatgcatca 2455 Query: 549 acactgatcttggctgtggccgaagcgccaaaggttgagggaggaaccatgtcagggcca 608 ||||||||||| |||||||| || || |||||||||||||||||||| ||||| |||||| Sbjct: 2454 acactgatctttgctgtggctgaggcaccaaaggttgagggaggaacgatgtccgggcca 2395 Query: 609 ggcatcggtgg 619 ||||| ||||| Sbjct: 2394 ggcattggtgg 2384 Score = 123 bits (62), Expect = 8e-25 Identities = 92/102 (90%) Strand = Plus / Minus Query: 197 cttgcgcagttcactctcaccatgggcaaagtggcatctgtctccaaatgtgcaagagcc 256 ||||||||| ||||| ||||||||||| || || || ||||||||||| ||||| ||||| Sbjct: 2806 cttgcgcagctcactttcaccatgggcgaaatgacacctgtctccaaacgtgcaggagcc 2747 Query: 257 tttgttgaagttgtcacacagcttggtcttgaagttgcttcc 298 | |||||||||| ||||||||||||||||||||||||||||| Sbjct: 2746 tctgttgaagttctcacacagcttggtcttgaagttgcttcc 2705 Score = 44.1 bits (22), Expect = 0.61 Identities = 37/42 (88%) Strand = Plus / Minus Query: 647 tcccattggaggtgccattgagttgttcaacagcatgggctt 688 |||||||||| ||| ||||||||||| || |||||| ||||| Sbjct: 2365 tcccattggatgtggcattgagttgtccagcagcatcggctt 2324
>ref|XM_464444.1| Oryza sativa (japonica cultivar-group), mRNA Length = 903 Score = 190 bits (96), Expect = 4e-45 Identities = 252/304 (82%) Strand = Plus / Minus Query: 365 aatcagctccttcaccattgcactggcatggttgacctgatcaaacgatccctcgagctc 424 |||||||||| ||||||||||||| || | |||| ||||||||| | ||||| ||||| Sbjct: 714 aatcagctccctcaccattgcactagcgttcttgatctgatcaaatgtgccctcaagctc 655 Query: 425 aatgtttttatggttggggtctgcctcattatcccggatggccagcttggccccagtcat 484 ||||||||| ||||| ||||| |||| ||| |||||||||||||||||||| || | Sbjct: 654 aatgtttttcaagttggtgtctgattcatgatcacggatggccagcttggcccctgtgac 595 Query: 485 tcgggatatgtgctttgtgttgactccacccttcccaataatggcgccagcaagggatgc 544 || |||||| ||||||||||| || |||||| |||| || ||| | || ||||| ||||| Sbjct: 594 tctggatatctgctttgtgttaaccccacccctcccgattatgccacctgcaagagatgc 535 Query: 545 atcaacactgatcttggctgtggccgaagcgccaaaggttgagggaggaaccatgtcagg 604 ||||||||||||||||||||||||||||||||||||| ||| |||| |||| |||| Sbjct: 534 atcaacactgatcttggctgtggccgaagcgccaaagcttgctggagtggacatggcagg 475 Query: 605 gccaggcatcggtgggggctggaagtgaccattgggtcttggtcccattggaggtgccat 664 || |||||| ||||| || ||||||||| |||| |||||||||||||| || | ||| Sbjct: 474 gctaggcattggtggaggtgcaaagtgaccagtgggccttggtcccattgggggaggcat 415 Query: 665 tgag 668 |||| Sbjct: 414 tgag 411 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Minus Query: 213 tcaccatgggcaaagtggcatctgtctccaaatgtgcaagagcctttgttgaagttgtca 272 |||||||||||||| ||||| ||||| ||||| ||||| || |||||| ||||||| || Sbjct: 872 tcaccatgggcaaaatggcacctgtcgccaaaagtgcacgaccctttggtgaagttctcg 813 Query: 273 cacagcttggtcttgaagttgcttcc 298 |||||||||||||||||||||||||| Sbjct: 812 cacagcttggtcttgaagttgcttcc 787
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 190 bits (96), Expect = 4e-45 Identities = 252/304 (82%) Strand = Plus / Minus Query: 365 aatcagctccttcaccattgcactggcatggttgacctgatcaaacgatccctcgagctc 424 |||||||||| ||||||||||||| || | |||| ||||||||| | ||||| ||||| Sbjct: 5253365 aatcagctccctcaccattgcactagcgttcttgatctgatcaaatgtgccctcaagctc 5253306 Query: 425 aatgtttttatggttggggtctgcctcattatcccggatggccagcttggccccagtcat 484 ||||||||| ||||| ||||| |||| ||| |||||||||||||||||||| || | Sbjct: 5253305 aatgtttttcaagttggtgtctgattcatgatcacggatggccagcttggcccctgtgac 5253246 Query: 485 tcgggatatgtgctttgtgttgactccacccttcccaataatggcgccagcaagggatgc 544 || |||||| ||||||||||| || |||||| |||| || ||| | || ||||| ||||| Sbjct: 5253245 tctggatatctgctttgtgttaaccccacccctcccgattatgccacctgcaagagatgc 5253186 Query: 545 atcaacactgatcttggctgtggccgaagcgccaaaggttgagggaggaaccatgtcagg 604 ||||||||||||||||||||||||||||||||||||| ||| |||| |||| |||| Sbjct: 5253185 atcaacactgatcttggctgtggccgaagcgccaaagcttgctggagtggacatggcagg 5253126 Query: 605 gccaggcatcggtgggggctggaagtgaccattgggtcttggtcccattggaggtgccat 664 || |||||| ||||| || ||||||||| |||| |||||||||||||| || | ||| Sbjct: 5253125 gctaggcattggtggaggtgcaaagtgaccagtgggccttggtcccattgggggaggcat 5253066 Query: 665 tgag 668 |||| Sbjct: 5253065 tgag 5253062 Score = 101 bits (51), Expect = 3e-18 Identities = 102/119 (85%) Strand = Plus / Minus Query: 180 tctcaagccgcagccgacttgcgcagttcactctcaccatgggcaaagtggcatctgtct 239 |||||||| ||||| || || || || ||| | |||||||||||||| ||||| ||||| Sbjct: 5253556 tctcaagcagcagctgatttccgaagctcattttcaccatgggcaaaatggcacctgtcg 5253497 Query: 240 ccaaatgtgcaagagcctttgttgaagttgtcacacagcttggtcttgaagttgcttcc 298 ||||| ||||| || |||||| ||||||| || |||||||||||||||||||||||||| Sbjct: 5253496 ccaaaagtgcacgaccctttggtgaagttctcgcacagcttggtcttgaagttgcttcc 5253438
>dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0437H03 Length = 170173 Score = 190 bits (96), Expect = 4e-45 Identities = 252/304 (82%) Strand = Plus / Minus Query: 365 aatcagctccttcaccattgcactggcatggttgacctgatcaaacgatccctcgagctc 424 |||||||||| ||||||||||||| || | |||| ||||||||| | ||||| ||||| Sbjct: 146818 aatcagctccctcaccattgcactagcgttcttgatctgatcaaatgtgccctcaagctc 146759 Query: 425 aatgtttttatggttggggtctgcctcattatcccggatggccagcttggccccagtcat 484 ||||||||| ||||| ||||| |||| ||| |||||||||||||||||||| || | Sbjct: 146758 aatgtttttcaagttggtgtctgattcatgatcacggatggccagcttggcccctgtgac 146699 Query: 485 tcgggatatgtgctttgtgttgactccacccttcccaataatggcgccagcaagggatgc 544 || |||||| ||||||||||| || |||||| |||| || ||| | || ||||| ||||| Sbjct: 146698 tctggatatctgctttgtgttaaccccacccctcccgattatgccacctgcaagagatgc 146639 Query: 545 atcaacactgatcttggctgtggccgaagcgccaaaggttgagggaggaaccatgtcagg 604 ||||||||||||||||||||||||||||||||||||| ||| |||| |||| |||| Sbjct: 146638 atcaacactgatcttggctgtggccgaagcgccaaagcttgctggagtggacatggcagg 146579 Query: 605 gccaggcatcggtgggggctggaagtgaccattgggtcttggtcccattggaggtgccat 664 || |||||| ||||| || ||||||||| |||| |||||||||||||| || | ||| Sbjct: 146578 gctaggcattggtggaggtgcaaagtgaccagtgggccttggtcccattgggggaggcat 146519 Query: 665 tgag 668 |||| Sbjct: 146518 tgag 146515 Score = 101 bits (51), Expect = 3e-18 Identities = 102/119 (85%) Strand = Plus / Minus Query: 180 tctcaagccgcagccgacttgcgcagttcactctcaccatgggcaaagtggcatctgtct 239 |||||||| ||||| || || || || ||| | |||||||||||||| ||||| ||||| Sbjct: 147009 tctcaagcagcagctgatttccgaagctcattttcaccatgggcaaaatggcacctgtcg 146950 Query: 240 ccaaatgtgcaagagcctttgttgaagttgtcacacagcttggtcttgaagttgcttcc 298 ||||| ||||| || |||||| ||||||| || |||||||||||||||||||||||||| Sbjct: 146949 ccaaaagtgcacgaccctttggtgaagttctcgcacagcttggtcttgaagttgcttcc 146891
>ref|XM_474251.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 930 Score = 93.7 bits (47), Expect = 7e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 468 agcttggccccagtcattcgggatatgtgctttgtgttgactccacccttcccaataatg 527 |||||| ||||||| | |||| |||| ||||| ||||||||||||||||||||||| ||| Sbjct: 626 agcttgaccccagttactcggcatatctgcttcgtgttgactccacccttcccaattatg 567 Query: 528 gcgccagcaagggatgcatcaacactgatcttggc 562 | |||||||| || |||||||| ||||||||||| Sbjct: 566 ccaccagcaagcgaggcatcaacgctgatcttggc 532 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 263 gaagttgtcacacagcttggtcttgaagttgct 295 |||||| || ||||||||||||||| ||||||| Sbjct: 852 gaagttctcgcacagcttggtcttgtagttgct 820
>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence Length = 146168 Score = 93.7 bits (47), Expect = 7e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 468 agcttggccccagtcattcgggatatgtgctttgtgttgactccacccttcccaataatg 527 |||||| ||||||| | |||| |||| ||||| ||||||||||||||||||||||| ||| Sbjct: 70320 agcttgaccccagttactcggcatatctgcttcgtgttgactccacccttcccaattatg 70261 Query: 528 gcgccagcaagggatgcatcaacactgatcttggc 562 | |||||||| || |||||||| ||||||||||| Sbjct: 70260 ccaccagcaagcgaggcatcaacgctgatcttggc 70226 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 263 gaagttgtcacacagcttggtcttgaagttgct 295 |||||| || ||||||||||||||| ||||||| Sbjct: 70546 gaagttctcgcacagcttggtcttgtagttgct 70514
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 93.7 bits (47), Expect = 7e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 468 agcttggccccagtcattcgggatatgtgctttgtgttgactccacccttcccaataatg 527 |||||| ||||||| | |||| |||| ||||| ||||||||||||||||||||||| ||| Sbjct: 34019424 agcttgaccccagttactcggcatatctgcttcgtgttgactccacccttcccaattatg 34019365 Query: 528 gcgccagcaagggatgcatcaacactgatcttggc 562 | |||||||| || |||||||| ||||||||||| Sbjct: 34019364 ccaccagcaagcgaggcatcaacgctgatcttggc 34019330 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 263 gaagttgtcacacagcttggtcttgaagttgct 295 |||||| || ||||||||||||||| ||||||| Sbjct: 34019650 gaagttctcgcacagcttggtcttgtagttgct 34019618
>dbj|AK121951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107K04, full insert sequence Length = 1349 Score = 93.7 bits (47), Expect = 7e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 468 agcttggccccagtcattcgggatatgtgctttgtgttgactccacccttcccaataatg 527 |||||| ||||||| | |||| |||| ||||| ||||||||||||||||||||||| ||| Sbjct: 748 agcttgaccccagttactcggcatatctgcttcgtgttgactccacccttcccaattatg 689 Query: 528 gcgccagcaagggatgcatcaacactgatcttggc 562 | |||||||| || |||||||| ||||||||||| Sbjct: 688 ccaccagcaagcgaggcatcaacgctgatcttggc 654 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 263 gaagttgtcacacagcttggtcttgaagttgct 295 |||||| || ||||||||||||||| ||||||| Sbjct: 974 gaagttctcgcacagcttggtcttgtagttgct 942
>gb|AC166091.3| Glycine max clone gmw1-11j16, complete sequence Length = 69947 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 216 ccatgggcaaagtggcatctgtctccaaatgtgcaagagcctttgttgaagttgtcacac 275 ||||| |||||||| ||||| |||||||| |||||||| ||||| | || || |||||| Sbjct: 1886 ccatgtgcaaagtgacatctatctccaaacgtgcaagacccttttgtaaaattctcacac 1827 Query: 276 agcttggtcttgaagttgcttcc 298 ||||| ||||| || |||||||| Sbjct: 1826 agcttcgtcttaaaattgcttcc 1804 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 510 ccacccttcccaataatggcgccagcaagggatgcatcaacactgatcttggctgtggc 568 |||||||||||||| || || ||||| ||||| || || || ||||||||||||||||| Sbjct: 1592 ccacccttcccaatgatagctccagccagggaagcttctacgctgatcttggctgtggc 1534
>gb|AY112248.1| Zea mays CL633_5 mRNA sequence Length = 1172 Score = 54.0 bits (27), Expect = 6e-04 Identities = 72/87 (82%) Strand = Plus / Minus Query: 495 tgctttgtgttgactccacccttcccaataatggcgccagcaagggatgcatcaacactg 554 ||||| |||||||| || ||||| ||||| ||| | || ||||| || ||||| |||||| Sbjct: 640 tgcttagtgttgaccccgcccttaccaattatgccaccggcaagagacgcatccacactg 581 Query: 555 atcttggctgtggccgaagcgccaaag 581 |||||||| || ||||| || |||||| Sbjct: 580 atcttggcagtcgccgaggcaccaaag 554
>dbj|AP006377.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT38A19, TM0221, complete sequence Length = 110900 Score = 44.1 bits (22), Expect = 0.61 Identities = 34/38 (89%) Strand = Plus / Minus Query: 213 tcaccatgggcaaagtggcatctgtctccaaatgtgca 250 |||||||||||||| |||||| |||| |||||| |||| Sbjct: 78001 tcaccatgggcaaaatggcatttgtcaccaaatttgca 77964 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 270 tcacacagcttggtcttgaagttg 293 ||||||||||| |||||||||||| Sbjct: 78439 tcacacagctttgtcttgaagttg 78416
>gb|AC125233.4| Mus musculus BAC clone RP23-9D24 from chromosome 5, complete sequence Length = 212792 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 aatgtttttatggttggggtc 445 ||||||||||||||||||||| Sbjct: 80532 aatgtttttatggttggggtc 80512
>emb|AL035563.19|HS1068E13 Human DNA sequence from clone RP5-1068E13 on chromosome 20p11.21-12.3 Contains a eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) pseudogene, a novel gene, the C20orf78 gene for chromosome 20 open reading frame 78 and the C20orf79 gene for chromosome 20 open reading frame 79, complete sequence Length = 148177 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 619 ggggctggaagtgaccattgg 639 ||||||||||||||||||||| Sbjct: 77922 ggggctggaagtgaccattgg 77942
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 519 ccaataatggcgccagcaagggatg 543 |||||||||||||||||| |||||| Sbjct: 1997382 ccaataatggcgccagcatgggatg 1997358
>gb|AC121147.8| Mus musculus chromosome 3, clone RP24-369O15, complete sequence Length = 178352 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 ctctcaccatgggcaaagtggcat 233 ||||||||||| |||||||||||| Sbjct: 118848 ctctcaccatgtgcaaagtggcat 118825
>gb|AC116776.12| Mus musculus chromosome 3, clone RP24-472H5, complete sequence Length = 170076 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 ctctcaccatgggcaaagtggcat 233 ||||||||||| |||||||||||| Sbjct: 140480 ctctcaccatgtgcaaagtggcat 140503
>gb|AC146396.5| Pan troglodytes BAC clone RP43-55A22 from 7, complete sequence Length = 145292 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 atcagctccttcaccattgc 385 |||||||||||||||||||| Sbjct: 127189 atcagctccttcaccattgc 127170
>gb|AC111010.5| Mus musculus BAC clone RP23-419L21 from chromosome 14, complete sequence Length = 205141 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 gcatggttgacctgatcaaa 409 |||||||||||||||||||| Sbjct: 41239 gcatggttgacctgatcaaa 41258
>gb|AC128571.4| Rattus norvegicus 6 BAC CH230-424O13 (Children's Hospital Oakland Research Institute) complete sequence Length = 194127 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 621 ggctggaagtgaccattggg 640 |||||||||||||||||||| Sbjct: 109390 ggctggaagtgaccattggg 109409
>gb|AC026898.8| Homo sapiens chromosome 18, clone RP11-767C4, complete sequence Length = 187295 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 245 tgtgcaagagcctttgttgaagtt 268 ||||||||||||||||||| |||| Sbjct: 73353 tgtgcaagagcctttgttgcagtt 73330
>gb|AC022138.5| Homo sapiens chromosome 5 clone CTD-2252A20, complete sequence Length = 174627 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ttgaagttgtcacacagctt 280 |||||||||||||||||||| Sbjct: 71169 ttgaagttgtcacacagctt 71150
>gb|AC004922.2| Homo sapiens PAC clone RP5-900K19 from 7, complete sequence Length = 82359 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 atcagctccttcaccattgc 385 |||||||||||||||||||| Sbjct: 8029 atcagctccttcaccattgc 8048
>gb|AC026796.5| Homo sapiens chromosome 5 clone CTD-2292M14, complete sequence Length = 151019 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ttgaagttgtcacacagctt 280 |||||||||||||||||||| Sbjct: 145306 ttgaagttgtcacacagctt 145287
>ref|NM_060388.1| Caenorhabditis elegans B0511.2 (B0511.2) mRNA, complete cds Length = 1377 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 agctccttcaccattgcact 388 |||||||||||||||||||| Sbjct: 1236 agctccttcaccattgcact 1217
>gb|AC146422.4| Pan troglodytes BAC clone RP43-27K9 from chromosome 7, complete sequence Length = 189507 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 atcagctccttcaccattgc 385 |||||||||||||||||||| Sbjct: 113510 atcagctccttcaccattgc 113491
>gb|AY171761.1| Oryctolagus cuniculus clone mp072VL antibody variable domain mRNA, partial cds Length = 324 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gcgcagttcactctcaccat 219 |||||||||||||||||||| Sbjct: 205 gcgcagttcactctcaccat 224
>emb|AJ331519.1|HSA331519 Homo sapiens genomic sequence surrounding NotI site, clone NR1-EJ17RS Length = 764 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 caatgtttttatggttgggg 443 |||||||||||||||||||| Sbjct: 539 caatgtttttatggttgggg 520 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,481,446 Number of Sequences: 3902068 Number of extensions: 5481446 Number of successful extensions: 106658 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106467 Number of HSP's gapped (non-prelim): 188 length of query: 691 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 668 effective length of database: 17,143,297,704 effective search space: 11451722866272 effective search space used: 11451722866272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)