No.
Definition
Score (bits)
E Value
1 ref|XM_507073.1| PREDICTED Oryza sativa (japonica cultivar-group...
410
e-111
2 ref|XM_469942.1| Oryza sativa (japonica cultivar-group), mRNA
410
e-111
3 dbj|AK064781.1| Oryza sativa (japonica cultivar-group) cDNA clon...
283
4e-73
4 gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 geno...
198
2e-47
5 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
198
2e-47
6 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
198
2e-47
7 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
198
2e-47
8 dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic D...
198
2e-47
9 ref|NM_188651.1| Oryza sativa (japonica cultivar-group), Ozsa825...
182
1e-42
10 gb|BT012943.1| Lycopersicon esculentum clone 114111R, mRNA sequence
149
1e-32
11 gb|AY555143.1| Zea may BAC clone c573L14, complete sequence
149
1e-32
12 gb|DQ235196.1| Solanum tuberosum clone 168D05 unknown mRNA
147
6e-32
13 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
137
6e-29
14 dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic D...
137
6e-29
15 dbj|AK103163.1| Oryza sativa (japonica cultivar-group) cDNA clon...
135
2e-28
16 gb|AY104256.1| Zea mays PCO116634 mRNA sequence
105
2e-19
17 gb|AC182692.2| Populus trichocarpa clone Pop1-44B2, complete seq...
78
4e-11
18 ref|NM_101060.2| Arabidopsis thaliana SEC22; transporter AT1G118...
72
3e-09
19 gb|AY079413.1| Arabidopsis thaliana putative vesicle transport p...
72
3e-09
20 gb|AY045795.1| Arabidopsis thaliana putative vesicle transport p...
72
3e-09
21 emb|BX814703.1|CNS0ABY6 Arabidopsis thaliana Full-length cDNA Co...
72
3e-09
22 emb|BX818041.1|CNS0AB1T Arabidopsis thaliana Full-length cDNA Co...
72
3e-09
23 emb|BX841894.1|CNS09Y4T Arabidopsis thaliana Full-length cDNA Co...
72
3e-09
24 gb|AY086749.1| Arabidopsis thaliana clone 273 mRNA, complete seq...
72
3e-09
25 ref|XM_481473.1| Oryza sativa (japonica cultivar-group), mRNA
70
1e-08
26 gb|AY360390.1| Oryza sativa (japonica cultivar-group) chromosome...
70
1e-08
27 gb|AY360389.1| Oryza sativa (japonica cultivar-group) chromosome...
70
1e-08
28 dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...
70
1e-08
29 dbj|AP005693.2| Oryza sativa (japonica cultivar-group) genomic D...
70
1e-08
30 emb|BX818320.1|CNS0AB2F Arabidopsis thaliana Full-length cDNA Co...
68
4e-08
31 gb|AC002131.1|F12F1 Arabidopsis thaliana chromosome 1 BAC F12F1 ...
66
2e-07
32 gb|AC152057.11| Medicago truncatula clone mth2-25a12, complete s...
50
0.010
33 gb|AF457114.1| Lepidothamnus laxifolius maturase K (matK) gene, ...
46
0.16
34 gb|AE014841.1| Plasmodium falciparum 3D7 chromosome 11 section 6...
44
0.62
35 emb|AL607026.11| Human DNA sequence from clone RP11-498G22 on ch...
44
0.62
36 gb|AC103727.2| Homo sapiens chromosome 18, clone RP11-189C5, com...
44
0.62
37 gb|AC024072.5| Homo sapiens chromosome 10 clone RP11-267O2, comp...
44
0.62
38 ref|NM_115788.1| Arabidopsis thaliana calmodulin binding AT3G592...
42
2.4
39 emb|AL592308.3| Human DNA sequence from clone RP13-610P22 on chr...
42
2.4
40 emb|AL356014.1|ATF25L23 Arabidopsis thaliana DNA chromosome 3, B...
42
2.4
41 emb|BX323595.8| Zebrafish DNA sequence from clone CH211-155O21 i...
42
2.4
42 gb|AC073345.11| Homo sapiens BAC clone RP11-630O5 from 7, comple...
40
9.6
43 gb|AC145906.2| Pan troglodytes BAC clone RP43-9J5 from 7, comple...
40
9.6
44 gb|AC124445.4| Mus musculus BAC clone RP24-191B18 from chromosom...
40
9.6
45 gb|AC125074.3| Mus musculus BAC clone RP23-464N18 from chromosom...
40
9.6
46 gb|AC129313.4| Mus musculus BAC clone RP23-342K4 from chromosome...
40
9.6
47 gb|AC144539.7| Medicago truncatula clone mth2-11o10, complete se...
40
9.6
48 gb|AC145330.19| Medicago truncatula clone mth2-17l1, complete se...
40
9.6
49 emb|AL139098.15| Human DNA sequence from clone RP1-276J11 on chr...
40
9.6
50 emb|AL138879.10| Human DNA sequence from clone RP11-397G17 on ch...
40
9.6
51 gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
40
9.6
52 gb|AC097652.2| Homo sapiens BAC clone RP11-138B4 from 4, complet...
40
9.6
53 dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic D...
40
9.6
54 dbj|BS000064.1| Pan troglodytes chromosome 22 clone:RP43-044K09,...
40
9.6
55 emb|CT573071.1| Kuenenia stuttgartiensis genome fragment KUST_E ...
40
9.6
56 dbj|AP001680.1| Homo sapiens genomic DNA, chromosome 21q, sectio...
40
9.6
57 emb|CT030255.8| Mouse DNA sequence from clone RP23-267P22 on chr...
40
9.6
58 emb|AL591127.12| Mouse DNA sequence from clone RP23-370H21 on ch...
40
9.6
59 gb|AC145963.5| Gallus gallus BAC clone CH261-20A24 from chromoso...
40
9.6
60 gb|AC151413.2| Mus musculus BAC clone RP23-103N6 from 19, comple...
40
9.6
61 dbj|AP000957.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21...
40
9.6
>ref|XM_507073.1 | PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0060J21.31
mRNA
Length = 1456
Score = 410 bits (207), Expect = e-111
Identities = 310/343 (90%), Gaps = 1/343 (0%)
Strand = Plus / Minus
Query: 361 ccgatcacgatggcaacgggggcatacttccgaatgaaggcctggcgattgagatccttt 420
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1023 ccgatcacaatggcaacgggggcatacttccgaatcaaggcctggcgattgagatcctta 964
Query: 421 gccttatcagcatagattctcgtgtcagatgtcaacctacttgacatttcactaacctga 480
|||||||| ||||| ||||| |||||||| ||||||||| ||||||||||| | |||||
Sbjct: 963 gccttatctgcatacattcttgtgtcagaagtcaacctagttgacatttcagtgacctgg 904
Query: 481 tcaagcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacc 540
|| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 903 tctagcttttcaccgacaccaagaacttcttgaacattgcgagtcataatctgatgcacc 844
Query: 541 tcatagagctcatcgttcaatttcgcaatgttcctctgggttctggtatccaaatacagt 600
|||||||||||||| ||||||||||||| |||||||||||||| || |||||||| |||
Sbjct: 843 tcatagagctcatcattcaatttcgcaagattcctctgggttctagtgtccaaataaagt 784
Query: 601 ttcttagtcttctgtatgtatgtatcaaatttaataaaaagcgtaaggccttgcagcagt 660
|||||||||||||| ||| |||| ||||| ||||| ||| || || ||||||||||| ||
Sbjct: 783 ttcttagtcttctgaatgaatgtgtcaaacttaat-aaaggcatatggccttgcagctgt 725
Query: 661 ttcaatttgactcccattgactctctcaaattcatttttcaga 703
||| |||||||| ||||||||||| |||||||| |||||||||
Sbjct: 724 ttcgatttgactgccattgactctttcaaattcgtttttcaga 682
Score = 61.9 bits (31), Expect = 3e-06
Identities = 87/104 (83%), Gaps = 5/104 (4%)
Strand = Plus / Minus
Query: 58 atcccgatatcgaaaactcagactctacagagctcttgtatgtatgtacggttcccagga 117
||||| ||| |||||||||| |||||||||||||||| |||||| | ||||| ||||
Sbjct: 1341 atcccaataccgaaaactca-actctacagagctcttatatgta----cagttccaagga 1287
Query: 118 ttcacaaaatcatgtccgccatatggtctacactacaacgaatt 161
|| ||||||||| ||||| |||| || ||| ||||||||||||
Sbjct: 1286 tttacaaaatcaagtccgtcataaggcctatgctacaacgaatt 1243
Score = 61.9 bits (31), Expect = 3e-06
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 207 aagtactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgatccag 266
||||||||||||||| ||||||||||||||||| |||| | ||||| || |||||||||
Sbjct: 1197 aagtactcgcttgaatgggcagatacgggatacacgtcaccaaagca-ctattgatccag 1139
Query: 267 aat 269
|||
Sbjct: 1138 aat 1136
>ref|XM_469942.1 | Oryza sativa (japonica cultivar-group), mRNA
Length = 1228
Score = 410 bits (207), Expect = e-111
Identities = 310/343 (90%), Gaps = 1/343 (0%)
Strand = Plus / Minus
Query: 361 ccgatcacgatggcaacgggggcatacttccgaatgaaggcctggcgattgagatccttt 420
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 795 ccgatcacaatggcaacgggggcatacttccgaatcaaggcctggcgattgagatcctta 736
Query: 421 gccttatcagcatagattctcgtgtcagatgtcaacctacttgacatttcactaacctga 480
|||||||| ||||| ||||| |||||||| ||||||||| ||||||||||| | |||||
Sbjct: 735 gccttatctgcatacattcttgtgtcagaagtcaacctagttgacatttcagtgacctgg 676
Query: 481 tcaagcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacc 540
|| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 675 tctagcttttcaccgacaccaagaacttcttgaacattgcgagtcataatctgatgcacc 616
Query: 541 tcatagagctcatcgttcaatttcgcaatgttcctctgggttctggtatccaaatacagt 600
|||||||||||||| ||||||||||||| |||||||||||||| || |||||||| |||
Sbjct: 615 tcatagagctcatcattcaatttcgcaagattcctctgggttctagtgtccaaataaagt 556
Query: 601 ttcttagtcttctgtatgtatgtatcaaatttaataaaaagcgtaaggccttgcagcagt 660
|||||||||||||| ||| |||| ||||| ||||| ||| || || ||||||||||| ||
Sbjct: 555 ttcttagtcttctgaatgaatgtgtcaaacttaat-aaaggcatatggccttgcagctgt 497
Query: 661 ttcaatttgactcccattgactctctcaaattcatttttcaga 703
||| |||||||| ||||||||||| |||||||| |||||||||
Sbjct: 496 ttcgatttgactgccattgactctttcaaattcgtttttcaga 454
Score = 61.9 bits (31), Expect = 3e-06
Identities = 87/104 (83%), Gaps = 5/104 (4%)
Strand = Plus / Minus
Query: 58 atcccgatatcgaaaactcagactctacagagctcttgtatgtatgtacggttcccagga 117
||||| ||| |||||||||| |||||||||||||||| |||||| | ||||| ||||
Sbjct: 1113 atcccaataccgaaaactca-actctacagagctcttatatgta----cagttccaagga 1059
Query: 118 ttcacaaaatcatgtccgccatatggtctacactacaacgaatt 161
|| ||||||||| ||||| |||| || ||| ||||||||||||
Sbjct: 1058 tttacaaaatcaagtccgtcataaggcctatgctacaacgaatt 1015
Score = 61.9 bits (31), Expect = 3e-06
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 207 aagtactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgatccag 266
||||||||||||||| ||||||||||||||||| |||| | ||||| || |||||||||
Sbjct: 969 aagtactcgcttgaatgggcagatacgggatacacgtcaccaaagca-ctattgatccag 911
Query: 267 aat 269
|||
Sbjct: 910 aat 908
>dbj|AK064781.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J013000B09, full
insert sequence
Length = 1842
Score = 283 bits (143), Expect = 4e-73
Identities = 203/223 (91%)
Strand = Plus / Minus
Query: 361 ccgatcacgatggcaacgggggcatacttccgaatgaaggcctggcgattgagatccttt 420
|||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1423 ccgatcacaatggcaacaggggcatacttccgaatcaaggcctggcgattgagatcctta 1364
Query: 421 gccttatcagcatagattctcgtgtcagatgtcaacctacttgacatttcactaacctga 480
|||||||| ||||||||||| |||||||| |||| |||| |||||||||| | |||||
Sbjct: 1363 gccttatctgcatagattcttgtgtcagaagtcagcctagctgacatttcagtgacctgg 1304
Query: 481 tcaagcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacc 540
|| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1303 tctagcttttcaccgacaccaagaacttcttgaacattacgagtcataatttgatgcacc 1244
Query: 541 tcatagagctcatcgttcaatttcgcaatgttcctctgggttc 583
|||||||||||||| || |||||||||| |||||||||||||
Sbjct: 1243 tcatagagctcatcatttaatttcgcaagattcctctgggttc 1201
Score = 71.9 bits (36), Expect = 3e-09
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 207 aagtactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgat 262
||||| ||||||||| |||||||||||||||||||||| | ||||||||||||||
Sbjct: 1608 aagtagtcgcttgaatgggcagatacgggatacaagtcaccaaagcatctcttgat 1553
Score = 58.0 bits (29), Expect = 4e-05
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 647 ggccttgcagcagtttcaatttgactcccattgactctctcaaattcatttttcaga 703
||||||||||| ||||| |||||||| || |||||||| || ||||||||| |||||
Sbjct: 1181 ggccttgcagctgtttcgatttgactgccgttgactctttcgaattcatttctcaga 1125
Score = 48.1 bits (24), Expect = 0.039
Identities = 49/57 (85%), Gaps = 4/57 (7%)
Strand = Plus / Minus
Query: 79 actctacagagctcttgtatgtatgtacggttcccaggattcacaaaatcatgtccg 135
|||||||||||||||||||| || ||||||| ||| |||||||||||| |||||
Sbjct: 1739 actctacagagctcttgtatata----cggttccaagggttcacaaaatcaagtccg 1687
>gb|AC090871.11 | Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete
sequence
Length = 162497
Score = 198 bits (100), Expect = 2e-47
Identities = 130/140 (92%)
Strand = Plus / Minus
Query: 484 agcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacctca 543
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 135081 agcttttcaccgacaccaagaacttcttgaacattgcgagtcataatctgatgcacctca 135022
Query: 544 tagagctcatcgttcaatttcgcaatgttcctctgggttctggtatccaaatacagtttc 603
||||||||||| ||||||||||||| |||||||||||||| || |||||||| ||||||
Sbjct: 135021 tagagctcatcattcaatttcgcaagattcctctgggttctagtgtccaaataaagtttc 134962
Query: 604 ttagtcttctgtatgtatgt 623
||||||||||| ||| ||||
Sbjct: 134961 ttagtcttctgaatgaatgt 134942
Score = 93.7 bits (47), Expect = 7e-16
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 401 cctggcgattgagatcctttgccttatcagcatagattctcgtgtcagatgtcaacctac 460
||||||||||||||||||| |||||||| ||||| ||||| |||||||| |||||||||
Sbjct: 135515 cctggcgattgagatccttagccttatctgcatacattcttgtgtcagaagtcaacctag 135456
Query: 461 ttgacatttca 471
|||||||||||
Sbjct: 135455 ttgacatttca 135445
Score = 73.8 bits (37), Expect = 7e-10
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 647 ggccttgcagcagtttcaatttgactcccattgactctctcaaattcatttttcaga 703
||||||||||| ||||| |||||||| ||||||||||| |||||||| |||||||||
Sbjct: 134836 ggccttgcagctgtttcgatttgactgccattgactctttcaaattcgtttttcaga 134780
Score = 71.9 bits (36), Expect = 3e-09
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 361 ccgatcacgatggcaacgggggcatacttccgaatgaaggcctg 404
|||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 136195 ccgatcacaatggcaacgggggcatacttccgaatcaaggcctg 136152
Score = 61.9 bits (31), Expect = 3e-06
Identities = 87/104 (83%), Gaps = 5/104 (4%)
Strand = Plus / Minus
Query: 58 atcccgatatcgaaaactcagactctacagagctcttgtatgtatgtacggttcccagga 117
||||| ||| |||||||||| |||||||||||||||| |||||| | ||||| ||||
Sbjct: 136513 atcccaataccgaaaactca-actctacagagctcttatatgta----cagttccaagga 136459
Query: 118 ttcacaaaatcatgtccgccatatggtctacactacaacgaatt 161
|| ||||||||| ||||| |||| || ||| ||||||||||||
Sbjct: 136458 tttacaaaatcaagtccgtcataaggcctatgctacaacgaatt 136415
Score = 61.9 bits (31), Expect = 3e-06
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 207 aagtactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgatccag 266
||||||||||||||| ||||||||||||||||| |||| | ||||| || |||||||||
Sbjct: 136369 aagtactcgcttgaatgggcagatacgggatacacgtcaccaaagca-ctattgatccag 136311
Query: 267 aat 269
|||
Sbjct: 136310 aat 136308
>gb|DP000009.1 | Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 198 bits (100), Expect = 2e-47
Identities = 130/140 (92%)
Strand = Plus / Plus
Query: 484 agcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacctca 543
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 32608826 agcttttcaccgacaccaagaacttcttgaacattgcgagtcataatctgatgcacctca 32608885
Query: 544 tagagctcatcgttcaatttcgcaatgttcctctgggttctggtatccaaatacagtttc 603
||||||||||| ||||||||||||| |||||||||||||| || |||||||| ||||||
Sbjct: 32608886 tagagctcatcattcaatttcgcaagattcctctgggttctagtgtccaaataaagtttc 32608945
Query: 604 ttagtcttctgtatgtatgt 623
||||||||||| ||| ||||
Sbjct: 32608946 ttagtcttctgaatgaatgt 32608965
Score = 93.7 bits (47), Expect = 7e-16
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 401 cctggcgattgagatcctttgccttatcagcatagattctcgtgtcagatgtcaacctac 460
||||||||||||||||||| |||||||| ||||| ||||| |||||||| |||||||||
Sbjct: 32608392 cctggcgattgagatccttagccttatctgcatacattcttgtgtcagaagtcaacctag 32608451
Query: 461 ttgacatttca 471
|||||||||||
Sbjct: 32608452 ttgacatttca 32608462
Score = 73.8 bits (37), Expect = 7e-10
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 647 ggccttgcagcagtttcaatttgactcccattgactctctcaaattcatttttcaga 703
||||||||||| ||||| |||||||| ||||||||||| |||||||| |||||||||
Sbjct: 32609071 ggccttgcagctgtttcgatttgactgccattgactctttcaaattcgtttttcaga 32609127
Score = 71.9 bits (36), Expect = 3e-09
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 361 ccgatcacgatggcaacgggggcatacttccgaatgaaggcctg 404
|||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 32607712 ccgatcacaatggcaacgggggcatacttccgaatcaaggcctg 32607755
Score = 61.9 bits (31), Expect = 3e-06
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 207 aagtactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgatccag 266
||||||||||||||| ||||||||||||||||| |||| | ||||| || |||||||||
Sbjct: 32607538 aagtactcgcttgaatgggcagatacgggatacacgtcaccaaagca-ctattgatccag 32607596
Query: 267 aat 269
|||
Sbjct: 32607597 aat 32607599
Score = 61.9 bits (31), Expect = 3e-06
Identities = 87/104 (83%), Gaps = 5/104 (4%)
Strand = Plus / Plus
Query: 58 atcccgatatcgaaaactcagactctacagagctcttgtatgtatgtacggttcccagga 117
||||| ||| |||||||||| |||||||||||||||| |||||| | ||||| ||||
Sbjct: 32607394 atcccaataccgaaaactca-actctacagagctcttatatgta----cagttccaagga 32607448
Query: 118 ttcacaaaatcatgtccgccatatggtctacactacaacgaatt 161
|| ||||||||| ||||| |||| || ||| ||||||||||||
Sbjct: 32607449 tttacaaaatcaagtccgtcataaggcctatgctacaacgaatt 32607492
>dbj|AP008212.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 198 bits (100), Expect = 2e-47
Identities = 130/140 (92%)
Strand = Plus / Plus
Query: 484 agcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacctca 543
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 5024675 agcttttcaccgacaccaagaacttcttgaacattacgagtcataatttgatgcacctca 5024734
Query: 544 tagagctcatcgttcaatttcgcaatgttcctctgggttctggtatccaaatacagtttc 603
||||||||||| || |||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 5024735 tagagctcatcatttaatttcgcaagattcctctgggttctagtatccaaatagagtttc 5024794
Query: 604 ttagtcttctgtatgtatgt 623
||||||||||| ||| ||||
Sbjct: 5024795 ttagtcttctgaatgaatgt 5024814
Score = 93.7 bits (47), Expect = 7e-16
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 401 cctggcgattgagatcctttgccttatcagcatagattctcgtgtcagatgtcaacctac 460
||||||||||||||||||| |||||||| ||||||||||| |||||||| |||| ||||
Sbjct: 5024304 cctggcgattgagatccttagccttatctgcatagattcttgtgtcagaagtcagcctag 5024363
Query: 461 ttgacatttca 471
|||||||||||
Sbjct: 5024364 ttgacatttca 5024374
Score = 71.9 bits (36), Expect = 3e-09
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 207 aagtactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgat 262
||||| ||||||||| |||||||||||||||||||||| | ||||||||||||||
Sbjct: 5023469 aagtagtcgcttgaatgggcagatacgggatacaagtcaccaaagcatctcttgat 5023524
Score = 63.9 bits (32), Expect = 7e-07
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 361 ccgatcacgatggcaacgggggcatacttccgaatgaaggcctg 404
|||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 5023654 ccgatcacaatggcaacaggggcatacttccgaatcaaggcctg 5023697
Score = 58.0 bits (29), Expect = 4e-05
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 647 ggccttgcagcagtttcaatttgactcccattgactctctcaaattcatttttcaga 703
||||||||||| ||||| |||||||| || |||||||| || ||||||||| |||||
Sbjct: 5024925 ggccttgcagctgtttcgatttgactgccgttgactctttcgaattcatttctcaga 5024981
Score = 48.1 bits (24), Expect = 0.039
Identities = 49/57 (85%), Gaps = 4/57 (7%)
Strand = Plus / Plus
Query: 79 actctacagagctcttgtatgtatgtacggttcccaggattcacaaaatcatgtccg 135
|||||||||||||||||||| || ||||||| ||| |||||||||||| |||||
Sbjct: 5023338 actctacagagctcttgtatata----cggttccaagggttcacaaaatcaagtccg 5023390
Score = 40.1 bits (20), Expect = 9.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 456 cctacttgacatttcactaa 475
||||||||||||||||||||
Sbjct: 16671722 cctacttgacatttcactaa 16671741
>dbj|AP008209.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 198 bits (100), Expect = 2e-47
Identities = 130/140 (92%)
Strand = Plus / Plus
Query: 484 agcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacctca 543
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 32699336 agcttttcaccgacaccaagaacttcttgaacattgcgagtcataatctgatgcacctca 32699395
Query: 544 tagagctcatcgttcaatttcgcaatgttcctctgggttctggtatccaaatacagtttc 603
||||||||||| ||||||||||||| |||||||||||||| || |||||||| ||||||
Sbjct: 32699396 tagagctcatcattcaatttcgcaagattcctctgggttctagtgtccaaataaagtttc 32699455
Query: 604 ttagtcttctgtatgtatgt 623
||||||||||| ||| ||||
Sbjct: 32699456 ttagtcttctgaatgaatgt 32699475
Score = 93.7 bits (47), Expect = 7e-16
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 401 cctggcgattgagatcctttgccttatcagcatagattctcgtgtcagatgtcaacctac 460
||||||||||||||||||| |||||||| ||||| ||||| |||||||| |||||||||
Sbjct: 32698902 cctggcgattgagatccttagccttatctgcatacattcttgtgtcagaagtcaacctag 32698961
Query: 461 ttgacatttca 471
|||||||||||
Sbjct: 32698962 ttgacatttca 32698972
Score = 73.8 bits (37), Expect = 7e-10
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 647 ggccttgcagcagtttcaatttgactcccattgactctctcaaattcatttttcaga 703
||||||||||| ||||| |||||||| ||||||||||| |||||||| |||||||||
Sbjct: 32699581 ggccttgcagctgtttcgatttgactgccattgactctttcaaattcgtttttcaga 32699637
Score = 71.9 bits (36), Expect = 3e-09
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 361 ccgatcacgatggcaacgggggcatacttccgaatgaaggcctg 404
|||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 32698222 ccgatcacaatggcaacgggggcatacttccgaatcaaggcctg 32698265
Score = 61.9 bits (31), Expect = 3e-06
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 207 aagtactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgatccag 266
||||||||||||||| ||||||||||||||||| |||| | ||||| || |||||||||
Sbjct: 32698048 aagtactcgcttgaatgggcagatacgggatacacgtcaccaaagca-ctattgatccag 32698106
Query: 267 aat 269
|||
Sbjct: 32698107 aat 32698109
Score = 61.9 bits (31), Expect = 3e-06
Identities = 87/104 (83%), Gaps = 5/104 (4%)
Strand = Plus / Plus
Query: 58 atcccgatatcgaaaactcagactctacagagctcttgtatgtatgtacggttcccagga 117
||||| ||| |||||||||| |||||||||||||||| |||||| | ||||| ||||
Sbjct: 32697904 atcccaataccgaaaactca-actctacagagctcttatatgta----cagttccaagga 32697958
Query: 118 ttcacaaaatcatgtccgccatatggtctacactacaacgaatt 161
|| ||||||||| ||||| |||| || ||| ||||||||||||
Sbjct: 32697959 tttacaaaatcaagtccgtcataaggcctatgctacaacgaatt 32698002
>dbj|AP006056.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:B1172G12
Length = 171974
Score = 198 bits (100), Expect = 2e-47
Identities = 130/140 (92%)
Strand = Plus / Plus
Query: 484 agcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgcacctca 543
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 66789 agcttttcaccgacaccaagaacttcttgaacattacgagtcataatttgatgcacctca 66848
Query: 544 tagagctcatcgttcaatttcgcaatgttcctctgggttctggtatccaaatacagtttc 603
||||||||||| || |||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 66849 tagagctcatcatttaatttcgcaagattcctctgggttctagtatccaaatagagtttc 66908
Query: 604 ttagtcttctgtatgtatgt 623
||||||||||| ||| ||||
Sbjct: 66909 ttagtcttctgaatgaatgt 66928
Score = 93.7 bits (47), Expect = 7e-16
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 401 cctggcgattgagatcctttgccttatcagcatagattctcgtgtcagatgtcaacctac 460
||||||||||||||||||| |||||||| ||||||||||| |||||||| |||| ||||
Sbjct: 66418 cctggcgattgagatccttagccttatctgcatagattcttgtgtcagaagtcagcctag 66477
Query: 461 ttgacatttca 471
|||||||||||
Sbjct: 66478 ttgacatttca 66488
Score = 71.9 bits (36), Expect = 3e-09
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 207 aagtactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgat 262
||||| ||||||||| |||||||||||||||||||||| | ||||||||||||||
Sbjct: 65583 aagtagtcgcttgaatgggcagatacgggatacaagtcaccaaagcatctcttgat 65638
Score = 63.9 bits (32), Expect = 7e-07
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 361 ccgatcacgatggcaacgggggcatacttccgaatgaaggcctg 404
|||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 65768 ccgatcacaatggcaacaggggcatacttccgaatcaaggcctg 65811
Score = 58.0 bits (29), Expect = 4e-05
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 647 ggccttgcagcagtttcaatttgactcccattgactctctcaaattcatttttcaga 703
||||||||||| ||||| |||||||| || |||||||| || ||||||||| |||||
Sbjct: 67039 ggccttgcagctgtttcgatttgactgccgttgactctttcgaattcatttctcaga 67095
Score = 48.1 bits (24), Expect = 0.039
Identities = 49/57 (85%), Gaps = 4/57 (7%)
Strand = Plus / Plus
Query: 79 actctacagagctcttgtatgtatgtacggttcccaggattcacaaaatcatgtccg 135
|||||||||||||||||||| || ||||||| ||| |||||||||||| |||||
Sbjct: 65452 actctacagagctcttgtatata----cggttccaagggttcacaaaatcaagtccg 65504
>dbj|AP008207.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 137 bits (69), Expect = 6e-29
Identities = 123/141 (87%)
Strand = Plus / Plus
Query: 478 tgatcaagcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgc 537
||||| || |||||||| ||||| ||||||||||||| |||||||||||| || || |||
Sbjct: 7439879 tgatctagtttttcaccaacaccgagaacttcttgaaaattgcgagtcataatctggtgc 7439938
Query: 538 acctcatagagctcatcgttcaatttcgcaatgttcctctgggttctggtatccaaatac 597
|||||||| |||||||| ||||| || || | |||||| |||||||||||||||||||||
Sbjct: 7439939 acctcataaagctcatcattcaacttggccaggttcctttgggttctggtatccaaatac 7439998
Query: 598 agtttcttagtcttctgtatg 618
| ||||| ||||||||||||
Sbjct: 7439999 aacttcttcgtcttctgtatg 7440019
Score = 69.9 bits (35), Expect = 1e-08
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 637 aaaagcgtaaggccttgcagcagtttcaatttgactcccattgactctctcaaattcatt 696
|||||| || || |||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct: 7440119 aaaagcatatggtcttgcagcagtttcaatttggttgccattgaccctctcaaattcatt 7440178
Query: 697 ttt 699
|||
Sbjct: 7440179 ttt 7440181
Score = 60.0 bits (30), Expect = 1e-05
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 401 cctggcgattgagatcctttgccttatcagcatagattctcgtgtcagatgtcaacctac 460
|||| |||||||||||||| ||||| || ||||| ||||| || ||||| ||||||||
Sbjct: 7439299 cctgacgattgagatccttcgccttctccgcataaattctagtatcagagatcaacctat 7439358
Query: 461 ttgacatttcactaacct 478
| ||||||||||| ||||
Sbjct: 7439359 tggacatttcactcacct 7439376
Score = 46.1 bits (23), Expect = 0.16
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 318 tcaccatatcttgttcttggcccagaacagtattattacaaccccgatcacgatggcaac 377
||||||||||||||||||| |||| || || || | ||| | || ||||| ||||||||
Sbjct: 7438573 tcaccatatcttgttcttgacccaaaagagcatcagtactattccaatcacaatggcaac 7438632
Query: 378 gggggcatacttccgaatgaaggcctg 404
|||||||||| ||||| | ||||||
Sbjct: 7438633 aagggcatacttgcgaataagggcctg 7438659
Score = 42.1 bits (21), Expect = 2.4
Identities = 51/60 (85%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 210 tactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgatccagaat 269
|||||||||||| ||||||| |||||| ||| |||| |||||||| |||| |||||||
Sbjct: 7438449 tactcgcttgaatgggcagatgcgggat--aagccatcaaagcatctgttgagccagaat 7438506
>dbj|AP002481.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0702F03
Length = 141111
Score = 137 bits (69), Expect = 6e-29
Identities = 123/141 (87%)
Strand = Plus / Plus
Query: 478 tgatcaagcttttcaccgacaccaagaacttcttgaacattgcgagtcatgatttgatgc 537
||||| || |||||||| ||||| ||||||||||||| |||||||||||| || || |||
Sbjct: 100907 tgatctagtttttcaccaacaccgagaacttcttgaaaattgcgagtcataatctggtgc 100966
Query: 538 acctcatagagctcatcgttcaatttcgcaatgttcctctgggttctggtatccaaatac 597
|||||||| |||||||| ||||| || || | |||||| |||||||||||||||||||||
Sbjct: 100967 acctcataaagctcatcattcaacttggccaggttcctttgggttctggtatccaaatac 101026
Query: 598 agtttcttagtcttctgtatg 618
| ||||| ||||||||||||
Sbjct: 101027 aacttcttcgtcttctgtatg 101047
Score = 69.9 bits (35), Expect = 1e-08
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 637 aaaagcgtaaggccttgcagcagtttcaatttgactcccattgactctctcaaattcatt 696
|||||| || || |||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct: 101147 aaaagcatatggtcttgcagcagtttcaatttggttgccattgaccctctcaaattcatt 101206
Query: 697 ttt 699
|||
Sbjct: 101207 ttt 101209
Score = 60.0 bits (30), Expect = 1e-05
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 401 cctggcgattgagatcctttgccttatcagcatagattctcgtgtcagatgtcaacctac 460
|||| |||||||||||||| ||||| || ||||| ||||| || ||||| ||||||||
Sbjct: 100327 cctgacgattgagatccttcgccttctccgcataaattctagtatcagagatcaacctat 100386
Query: 461 ttgacatttcactaacct 478
| ||||||||||| ||||
Sbjct: 100387 tggacatttcactcacct 100404
Score = 46.1 bits (23), Expect = 0.16
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 318 tcaccatatcttgttcttggcccagaacagtattattacaaccccgatcacgatggcaac 377
||||||||||||||||||| |||| || || || | ||| | || ||||| ||||||||
Sbjct: 99601 tcaccatatcttgttcttgacccaaaagagcatcagtactattccaatcacaatggcaac 99660
Query: 378 gggggcatacttccgaatgaaggcctg 404
|||||||||| ||||| | ||||||
Sbjct: 99661 aagggcatacttgcgaataagggcctg 99687
Score = 42.1 bits (21), Expect = 2.4
Identities = 51/60 (85%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 210 tactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgatccagaat 269
|||||||||||| ||||||| |||||| ||| |||| |||||||| |||| |||||||
Sbjct: 99477 tactcgcttgaatgggcagatgcgggat--aagccatcaaagcatctgttgagccagaat 99534
>dbj|AK103163.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J033121D12, full
insert sequence
Length = 1301
Score = 135 bits (68), Expect = 2e-28
Identities = 138/160 (86%), Gaps = 1/160 (0%)
Strand = Plus / Minus
Query: 540 ctcatagagctcatcgttcaatttcgcaatgttcctctgggttctggtatccaaatacag 599
|||||| |||||||| ||||| || || | |||||| ||||||||||||||||||||||
Sbjct: 660 ctcataaagctcatcattcaacttggccaggttcctttgggttctggtatccaaatacaa 601
Query: 600 tttcttagtcttctgtatgtatgtatcaaatttaataaaaagcgtaaggccttgcagcag 659
||||| |||||||||||| | || ||||| ||||| |||||| || || ||||||||||
Sbjct: 600 cttcttcgtcttctgtatgaaagtgtcaaacttaat-aaaagcatatggtcttgcagcag 542
Query: 660 tttcaatttgactcccattgactctctcaaattcattttt 699
|||||||||| | |||||||| |||||||||||||||||
Sbjct: 541 tttcaatttggttgccattgaccctctcaaattcattttt 502
Score = 97.6 bits (49), Expect = 5e-17
Identities = 133/161 (82%)
Strand = Plus / Minus
Query: 318 tcaccatatcttgttcttggcccagaacagtattattacaaccccgatcacgatggcaac 377
||||||||||||||||||| |||| || || || | ||| | || ||||| ||||||||
Sbjct: 821 tcaccatatcttgttcttgacccaaaagagcatcagtactattccaatcacaatggcaac 762
Query: 378 gggggcatacttccgaatgaaggcctggcgattgagatcctttgccttatcagcatagat 437
|||||||||| ||||| | |||||| |||||||||||||| ||||| || ||||| ||
Sbjct: 761 aagggcatacttgcgaataagggcctgacgattgagatccttcgccttctccgcataaat 702
Query: 438 tctcgtgtcagatgtcaacctacttgacatttcactaacct 478
||| || ||||| |||||||| | ||||||||||| ||||
Sbjct: 701 tctagtatcagagatcaacctattggacatttcactcacct 661
Score = 42.1 bits (21), Expect = 2.4
Identities = 51/60 (85%), Gaps = 2/60 (3%)
Strand = Plus / Minus
Query: 210 tactcgcttgaacaggcagatacgggatacaagtcatccaagcatctcttgatccagaat 269
|||||||||||| ||||||| |||||| ||| |||| |||||||| |||| |||||||
Sbjct: 945 tactcgcttgaatgggcagatgcgggat--aagccatcaaagcatctgttgagccagaat 888
>emb|AL139098.15 | Human DNA sequence from clone RP1-276J11 on chromosome 6 Contains the
5' end of the gene for a novel protein, a ribosomal
protein S15 (RPS15) pseudogene, a putative novel gene and
the GJA1 gene for gap junction protein, alpha 1, 43 kD
(connexin 43) (CX43). Contains a CpG island, complete
sequence
Length = 131501
Score = 40.1 bits (20), Expect = 9.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 606 agtcttctgtatgtatgtat 625
||||||||||||||||||||
Sbjct: 72708 agtcttctgtatgtatgtat 72689
>dbj|AP000957.2 | Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B781M3, LL56-APP
region, complete sequence
Length = 190937
Score = 40.1 bits (20), Expect = 9.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 267 aatttctttctccagtcttc 286
||||||||||||||||||||
Sbjct: 129262 aatttctttctccagtcttc 129281
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,284,062
Number of Sequences: 3902068
Number of extensions: 7284062
Number of successful extensions: 170585
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 170072
Number of HSP's gapped (non-prelim): 493
length of query: 703
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 680
effective length of database: 17,143,297,704
effective search space: 11657442438720
effective search space used: 11657442438720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)