Clone Information

BLAST Search Result

Clone Name	rbasd19b04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CHMP5_BRARE (Q7T339) Charged multivesicular body protein 5 (Chro...	147	4e-35
2	CHMP5_RAT (Q4QQV8) Charged multivesicular body protein 5 (Chroma...	146	5e-35
3	CHMP5_MOUSE (Q9D7S9) Charged multivesicular body protein 5 (Chro...	146	5e-35
4	CHMP5_XENTR (Q5FW29) Charged multivesicular body protein 5 (Chro...	145	1e-34
5	CHMP5_PONPY (Q5RBR3) Charged multivesicular body protein 5 (Chro...	144	2e-34
6	CHMP5_HUMAN (Q9NZZ3) Charged multivesicular body protein 5 (Chro...	144	2e-34
7	CHMP5_XENLA (Q6DD52) Charged multivesicular body protein 5 (Chro...	142	9e-34
8	VPS60_YEAST (Q03390) Vacuolar protein sorting-associated protein...	86	1e-16
9	SNF7_KLULA (Q6CJL0) Vacuolar sorting protein SNF7 (Vacuolar prot...	78	2e-14
10	SNF7_CANGA (Q6FW96) Vacuolar sorting protein SNF7 (Vacuolar prot...	70	6e-12
11	SNF7_CRYNE (Q5KL29) Vacuolar sorting protein SNF7 (Vacuolar prot...	67	5e-11
12	SNF7_CANAL (Q5ABD0) Vacuolar sorting protein SNF7 (Vacuolar prot...	65	3e-10
13	CHM4A_HUMAN (Q9BY43) Charged multivesicular body protein 4a (Chr...	62	2e-09
14	SNF7_ASHGO (Q753W3) Vacuolar sorting protein SNF7 (Vacuolar prot...	60	6e-09
15	SNF7_DEBHA (Q6BSH2) Vacuolar sorting protein SNF7 (Vacuolar prot...	59	1e-08
16	SNF7_SCHPO (Q9P7F7) Vacuolar sorting protein snf7 (Vacuolar prot...	58	2e-08
17	CHM4C_HUMAN (Q96CF2) Charged multivesicular body protein 4c (Chr...	58	2e-08
18	SNF7_YARLI (Q6CBS3) Vacuolar sorting protein SNF7 (Vacuolar prot...	58	3e-08
19	CHM4B_XENLA (Q5XGW6) Charged multivesicular body protein 4b (Chr...	58	3e-08
20	CHM4B_XENTR (Q6GL11) Charged multivesicular body protein 4b (Chr...	57	4e-08
21	VPS20_YEAST (Q04272) Vacuolar protein sorting protein 20 (Amino ...	56	9e-08
22	CHM4C_BRARE (Q6IQ73) Charged multivesicular body protein 4c (Chr...	56	1e-07
23	CHMP7_MOUSE (Q8R1T1) Protein CHMP7	54	4e-07
24	CHMP7_HUMAN (Q8WUX9) Protein CHMP7	54	4e-07
25	CHM4B_MOUSE (Q9D8B3) Charged multivesicular body protein 4b (Chr...	53	8e-07
26	CHM4B_HUMAN (Q9H444) Charged multivesicular body protein 4b (Chr...	53	8e-07
27	CHM4B_CHICK (Q5ZHP5) Charged multivesicular body protein 4b (Chr...	53	8e-07
28	SNF7_YEAST (P39929) Vacuolar sorting protein SNF7 (DOA4-independ...	53	8e-07
29	CHMP7_PONPY (Q5R812) Protein CHMP7	53	1e-06
30	CHMP7_CHICK (Q5ZJB7) Protein CHMP7	52	2e-06
31	CG301_HUMAN (P59074) Protein CGI-301	49	1e-05
32	DNAK_WOLTR (Q5GSE1) Chaperone protein dnaK (Heat shock protein 7...	37	0.073
33	NU159_YEAST (P40477) Nucleoporin NUP159 (Nuclear pore protein NU...	37	0.073
34	SYS_VIBPA (Q87QP1) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--...	34	0.47
35	SMC_METJA (Q59037) Chromosome partition protein smc homolog	34	0.47
36	DNAK_WOLPM (Q73GL7) Chaperone protein dnaK (Heat shock protein 7...	33	0.62
37	YJE9_YEAST (P47048) Hypothetical 52.8 kDa protein in MTR4-GYP6 i...	33	0.62
38	MLP2_YEAST (P40457) Protein MLP2 (Myosin-like protein 2)	33	0.81
39	MDN1_YEAST (Q12019) Midasin (MIDAS-containing protein)	33	0.81
40	RPOE_BACSU (P12464) DNA-directed RNA polymerase delta subunit (R...	32	1.4
41	CUL6_CAEEL (Q21346) Cullin-6	32	1.8
42	SQT1_YEAST (P35184) Ribosome assembly protein SQT1	32	2.4
43	ECX1_METMA (Q8PTT8) Probable exosome complex exonuclease 1 (EC 3...	32	2.4
44	APEA_DICDI (P51173) DNA-(apurinic or apyrimidinic site) lyase (E...	31	3.1
45	RPOB_THETN (Q8R7U6) DNA-directed RNA polymerase beta chain (EC 2...	31	3.1
46	OMPA_THEMA (Q01969) Outer membrane protein alpha precursor	31	4.0
47	DNAK_EHRRW (Q5HAY1) Chaperone protein dnaK (Heat shock protein 7...	31	4.0
48	DNAK_EHRRG (Q5FFM4) Chaperone protein dnaK (Heat shock protein 7...	31	4.0
49	LRC45_MOUSE (Q8CIM1) Leucine-rich repeat-containing protein 45	31	4.0
50	TIG_BACSU (P80698) Trigger factor (TF) (Vegetative protein 2) (V...	30	5.2
51	HDA3_YEAST (Q06623) HDA1 complex subunit 3 (Histone deacetylase ...	30	5.2
52	TRI37_HUMAN (O94972) Tripartite motif protein 37 (Mulibrey nanis...	30	5.2
53	TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-d...	30	5.2
54	ZN198_MOUSE (Q9CU65) Zinc finger protein 198 (Fragment)	30	5.2
55	DPO5_YEAST (P39985) DNA polymerase V (EC 2.7.7.7) (POL V)	30	6.9
56	KIF5C_HUMAN (O60282) Kinesin heavy chain isoform 5C (Kinesin hea...	30	6.9
57	CTGE5_MOUSE (Q8R311) Cutaneous T-cell lymphoma-associated antige...	30	6.9
58	DBP9_SCHPO (O60080) ATP-dependent RNA helicase dbp9 (EC 3.6.1.-)	30	9.0
59	GVPD2_HALSA (Q9HHT2) Protein gvpD 2	30	9.0
60	DYNA_CHICK (P35458) Dynactin-1 (150 kDa dynein-associated polype...	30	9.0
61	DNAJM_MYCPN (P75354) DnaJ-like protein MG200 homolog	30	9.0
62	UTRO_HUMAN (P46939) Utrophin (Dystrophin-related protein 1) (DRP...	30	9.0
63	SYT_LEIXX (Q6AFC3) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threon...	30	9.0
64	TIG_STRMU (Q8CWZ6) Trigger factor (TF)	30	9.0
65	EZRA_BACSU (O34894) Septation ring formation regulator ezrA	30	9.0
66	SYS_LACJO (Q74HZ5) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--...	30	9.0
67	RPOB_DEHSC (Q3ZX01) DNA-directed RNA polymerase beta chain (EC 2...	30	9.0

>CHMP5_BRARE (Q7T339) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 220

 Score =  147 bits (370), Expect = 4e-35
 Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 6/191 (3%)
 Frame = -3

Query: 683 LARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKD 504
           L +YK+Q+KK R GP++  VK +AMR+LKQ++MYEGQRD L  Q++N++Q  +  + +KD
Sbjct: 42  LMKYKDQMKKMRDGPSKNMVKQKAMRVLKQKRMYEGQRDQLMQQSFNMEQANYTIQTLKD 101

Query: 503 AQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDE 324
            + T+ AMK   KE+K   K V+I+ I+ +QD++ D+M+ +NE+QE L RSY  P +IDE
Sbjct: 102 TKTTVEAMKIGAKEMKKAYKNVKIDQIEDLQDQLEDMMEDANEVQEALSRSYGTP-EIDE 160

Query: 323 EELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQE---- 156
           ++L  ELDAL  ++          L  D  + LD   + PA P G    P +R       
Sbjct: 161 DDLEAELDALGDEL----------LLDDDNSYLDEASSAPAIPEG---APGDRTTNRDGV 207

Query: 155 --DEMGLPTVP 129
             DE GLP +P
Sbjct: 208 LVDEFGLPQIP 218

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>CHMP5_RAT (Q4QQV8) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score =  146 bits (369), Expect = 5e-35
 Identities = 79/190 (41%), Positives = 119/190 (62%), Gaps = 5/190 (2%)
 Frame = -3

Query: 683 LARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKD 504
           L +YK+QIKK R GPA+  VK +A+R+LKQ++MYE QRD L  Q++N++Q  +  + +KD
Sbjct: 42  LVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKD 101

Query: 503 AQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDE 324
            + T+ AMK   KE+K   K V+I+ I+ +QD++ D+M+ +NEIQE LGRSY  P ++DE
Sbjct: 102 TKTTVDAMKLGVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTP-ELDE 160

Query: 323 EELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQE---- 156
           ++L  ELDAL  ++          L  +  + LD   + PA P G   VP + + +    
Sbjct: 161 DDLEAELDALGDEL----------LADEDSSYLDEAASAPAIPEG---VPTDTKNKDGVL 207

Query: 155 -DEMGLPTVP 129
            DE GLP +P
Sbjct: 208 VDEFGLPQIP 217

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>CHMP5_MOUSE (Q9D7S9) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5) (SNF7 domain-containing protein 2)
          Length = 219

 Score =  146 bits (369), Expect = 5e-35
 Identities = 79/190 (41%), Positives = 119/190 (62%), Gaps = 5/190 (2%)
 Frame = -3

Query: 683 LARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKD 504
           L +YK+QIKK R GPA+  VK +A+R+LKQ++MYE QRD L  Q++N++Q  +  + +KD
Sbjct: 42  LVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKD 101

Query: 503 AQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDE 324
            + T+ AMK   KE+K   K V+I+ I+ +QD++ D+M+ +NEIQE LGRSY  P ++DE
Sbjct: 102 TKTTVDAMKLGVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTP-ELDE 160

Query: 323 EELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQE---- 156
           ++L  ELDAL  ++          L  +  + LD   + PA P G   VP + + +    
Sbjct: 161 DDLEAELDALGDEL----------LADEDSSYLDEAASAPAIPEG---VPTDTKNKDGVL 207

Query: 155 -DEMGLPTVP 129
            DE GLP +P
Sbjct: 208 VDEFGLPQIP 217

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>CHMP5_XENTR (Q5FW29) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score =  145 bits (365), Expect = 1e-34
 Identities = 79/190 (41%), Positives = 119/190 (62%), Gaps = 5/190 (2%)
 Frame = -3

Query: 683 LARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKD 504
           L +YK+Q+KK R GP++  VK +A+R+LKQ++MYE QRD L  Q++N++Q  +A + +KD
Sbjct: 42  LVKYKDQMKKMREGPSKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQTNYAIQSLKD 101

Query: 503 AQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDE 324
            + T+ AMK   KE+K   K V+I+ I+ +QD++ D+M+ +NEIQE L RSY  P +IDE
Sbjct: 102 TKTTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYGTP-EIDE 160

Query: 323 EELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQE---- 156
           ++L  ELDAL  ++          L  D  + LD   + PA P G   VP + + +    
Sbjct: 161 DDLEAELDALGDEL----------LLDDDTSYLDEAASAPAIPEG---VPNDSKNKDGVL 207

Query: 155 -DEMGLPTVP 129
            DE GLP +P
Sbjct: 208 VDEFGLPQIP 217

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>CHMP5_PONPY (Q5RBR3) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score =  144 bits (363), Expect = 2e-34
 Identities = 78/190 (41%), Positives = 118/190 (62%), Gaps = 5/190 (2%)
 Frame = -3

Query: 683 LARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKD 504
           L +YK+QIKK R GPA+  VK +A+R+LKQ++MYE QRD L  Q++N++Q  +  + +KD
Sbjct: 42  LVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKD 101

Query: 503 AQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDE 324
            + T+ AMK   KE+K   K V+I+ I+ +QD++ D+M+ +NEIQE L RSY  P ++DE
Sbjct: 102 TKTTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTP-ELDE 160

Query: 323 EELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQE---- 156
           ++L  ELDAL  ++          L  +  + LD   + PA P G   VP + + +    
Sbjct: 161 DDLEAELDALGDEL----------LADEDSSYLDEAASAPAIPEG---VPTDTKNKDGVL 207

Query: 155 -DEMGLPTVP 129
            DE GLP +P
Sbjct: 208 VDEFGLPQIP 217

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>CHMP5_HUMAN (Q9NZZ3) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5) (Vacuolar protein sorting 60) (Vps60)
           (hVps60) (SNF7 domain-containing protein 2)
          Length = 219

 Score =  144 bits (363), Expect = 2e-34
 Identities = 78/190 (41%), Positives = 118/190 (62%), Gaps = 5/190 (2%)
 Frame = -3

Query: 683 LARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKD 504
           L +YK+QIKK R GPA+  VK +A+R+LKQ++MYE QRD L  Q++N++Q  +  + +KD
Sbjct: 42  LVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKD 101

Query: 503 AQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDE 324
            + T+ AMK   KE+K   K V+I+ I+ +QD++ D+M+ +NEIQE L RSY  P ++DE
Sbjct: 102 TKTTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTP-ELDE 160

Query: 323 EELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQE---- 156
           ++L  ELDAL  ++          L  +  + LD   + PA P G   VP + + +    
Sbjct: 161 DDLEAELDALGDEL----------LADEDSSYLDEAASAPAIPEG---VPTDTKNKDGVL 207

Query: 155 -DEMGLPTVP 129
            DE GLP +P
Sbjct: 208 VDEFGLPQIP 217

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>CHMP5_XENLA (Q6DD52) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score =  142 bits (358), Expect = 9e-34
 Identities = 78/190 (41%), Positives = 118/190 (62%), Gaps = 5/190 (2%)
 Frame = -3

Query: 683 LARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKD 504
           L +YK+Q+KK R GP++  VK +A+R+LKQ++MYE QRD L  Q++N++Q  +  + +KD
Sbjct: 42  LIKYKDQMKKMREGPSKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQANYTIQTLKD 101

Query: 503 AQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDE 324
            + T+ AMK   KE+K   K V+I+ I+ +QD++ D+M+ +NEIQE L RSY  P +IDE
Sbjct: 102 TKTTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYGTP-EIDE 160

Query: 323 EELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQE---- 156
           ++L  ELDAL  ++          L  D  + LD   + PA P G   VP + + +    
Sbjct: 161 DDLEAELDALGDEL----------LLDDDTSYLDEAASAPAIPEG---VPNDSKNKDGVL 207

Query: 155 -DEMGLPTVP 129
            DE GLP +P
Sbjct: 208 VDEFGLPQIP 217

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>VPS60_YEAST (Q03390) Vacuolar protein sorting-associated protein VPS60|
          Length = 262

 Score = 85.9 bits (211), Expect = 1e-16
 Identities = 53/163 (32%), Positives = 88/163 (53%), Gaps = 18/163 (11%)
 Frame = -3

Query: 650 RPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAA 471
           R    Q +++ +A++IL +RK  E  +D L +Q++++ Q    ++ +++   T+ A+K  
Sbjct: 91  RSNNKQPSLRKQALKILNKRKQLENMKDSLDSQSWSMTQAQLTNDNLQNTMITINALKQT 150

Query: 470 NKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVP--DDIDEEELMGELDA 297
           N  +K     + I+ +  MQDEM+DL++  +E+QE L  + N    DDI + EL  ELDA
Sbjct: 151 NNAMKAQYGKINIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDA 210

Query: 296 LEADMDFE--------SNSVPSYLQP--------DKETDLDSE 216
           L A  DF          N +PSYL          D+E +LD+E
Sbjct: 211 L-AQEDFTLPTSENSLGNDMPSYLLGANAPPAFIDEEPNLDTE 252

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>SNF7_KLULA (Q6CJL0) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 232

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 1/163 (0%)
 Frame = -3

Query: 635 QEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELK 456
           Q   K  A   LK++K+YE Q D L +Q  +LDQ  ++ E      +T+ AMK     +K
Sbjct: 53  QSGNKNNAKTYLKKKKLYESQLDKLQSQIDSLDQQLYSIENANLNLETLKAMKQGASAMK 112

Query: 455 GMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDF 276
            + K + ++ +D   DE+ + ++++ EI E + +   + D++DE+EL  EL+ LE++   
Sbjct: 113 NIHKGLDLDKVDDTMDEIREQVELNQEISEAISKPLILQDELDEDELDQELELLESENLQ 172

Query: 275 ESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVP-ANRQQEDE 150
           + +  P   Q  ++  +D    LP+ P    + P  N  Q DE
Sbjct: 173 KEHIAPVPQQQIQQPSID----LPSVPDVKLSTPELNSAQADE 211

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>SNF7_CANGA (Q6FW96) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 228

 Score = 70.1 bits (170), Expect = 6e-12
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 1/159 (0%)
 Frame = -3

Query: 623 KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 444
           K  A   LK++K+YEGQ   L +Q  +L+Q  F+ E      +TM AMK   K +K +  
Sbjct: 58  KTMAKNALKKKKVYEGQLVKLESQMDSLEQQLFSIESANLNLETMRAMKQGAKAMKSIHS 117

Query: 443 TVRIEDIDSMQDEMMDLMDVSNEIQETLGRS-YNVPDDIDEEELMGELDALEADMDFESN 267
            + I+ +D   DE+ + +++  EI + + R  Y   ++IDE+EL  ELD L  + + +  
Sbjct: 118 GLDIDRVDETMDEIREQVELGEEISDAISRPLYTGANEIDEDELDEELDMLAQETEPQVA 177

Query: 266 SVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDE 150
           +    L   K+    S  N+P      +      ++EDE
Sbjct: 178 TKEQALPESKQA--LSMPNIPNTKIDESKTKIEEEEEDE 214

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>SNF7_CRYNE (Q5KL29) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 220

 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 8/183 (4%)
 Frame = -3

Query: 677 RYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQ 498
           + +E++KK +        K  AM  L+Q+K +E + D +      L+    A E      
Sbjct: 42  KIEEEMKKAKANATGN--KRLAMAALRQKKAHENELDRIAGTRLTLETQVNAIESANLNA 99

Query: 497 QTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEE 318
           +TM AMK     LKG+   +  E +D+  D++ + MD++N+I + +     +   +DE++
Sbjct: 100 ETMVAMKKGADALKGIHSNLTAEGVDATMDKIREQMDLTNDISDAISNPVGMGIVLDEDD 159

Query: 317 LMGELDALEA----DMDFESNSVPSYLQPDKETDLDSELNLPAAP----SGHAAVPANRQ 162
           L  EL+ALE     D    ++ VPS+              LPA+P    +G AAV  +  
Sbjct: 160 LKEELEALEQEQLDDRLAGADRVPSH--------------LPASPVGQTTGRAAVEEDED 205

Query: 161 QED 153
            E+
Sbjct: 206 DEE 208

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>SNF7_CANAL (Q5ABD0) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 226

 Score = 64.7 bits (156), Expect = 3e-10
 Identities = 45/158 (28%), Positives = 73/158 (46%)
 Frame = -3

Query: 614 AMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVR 435
           A   LK++K YE     + NQ   L+    + EG     +TM AMK   K +K +     
Sbjct: 61  AKSALKRKKGYESNLLKVENQIETLETQLISIEGANLNLETMKAMKQGAKAMKQIHGEYD 120

Query: 434 IEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPS 255
           ++ ++   DE+ + +++++EI E + R     + +DE+EL  EL  LEA+   +      
Sbjct: 121 VDKVEDTMDEIREQVELADEISEAISRPVG-NEFVDEDELDEELKELEAEAKEQEQEHRV 179

Query: 254 YLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDEMGL 141
             Q  K   +  E  LP  PS +   P   + EDE  L
Sbjct: 180 PAQKAKPQPVSREEELPQFPSVNKKAPVVEEDEDEEAL 217

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>CHM4A_HUMAN (Q9BY43) Charged multivesicular body protein 4a|
           (Chromatin-modifying protein 4a) (CHMP4a) (Vacuolar
           protein sorting 7-1) (SNF7-1) (hSnf-1) (SNF7 homolog
           associated with Alix-2)
          Length = 222

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 4/165 (2%)
 Frame = -3

Query: 623 KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQ---QTMTAMKAANKELKG 453
           K  A++ L+++K +E Q   L      L  + F  E I++A    + +  M+ A + +K 
Sbjct: 59  KRAALQALRRKKRFEQQ---LAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQSMKK 115

Query: 452 MMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFE 273
             + + I+ +D +  ++ +  +V+ +I + + R     DD+DE+EL+ EL+ LE +    
Sbjct: 116 AYQDMDIDKVDELMTDITEQQEVAQQISDAISRPMGFGDDVDEDELLEELEELEQE---- 171

Query: 272 SNSVPSYLQPDKETDLDSELNLPAAPSGH-AAVPANRQQEDEMGL 141
              +   L    + + +  + LP+ PS H  A PA +  EDE  L
Sbjct: 172 --ELAQELLNVGDKEEEPSVKLPSVPSTHLPAGPAPKVDEDEEAL 214

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>SNF7_ASHGO (Q753W3) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 237

 Score = 60.1 bits (144), Expect = 6e-09
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 9/167 (5%)
 Frame = -3

Query: 623 KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 444
           K  A   LK++K++E Q   +  Q  +L+Q  ++ E      +TM AMK     +K + +
Sbjct: 59  KNMAKAALKRKKVFESQLLKIDKQVDSLEQQLYSIENANLNLETMKAMKQGASAMKHIHE 118

Query: 443 TVRIEDIDSMQDEMMDLMDVSNEIQETLGRS-YNVPDDIDEEELMGELDALEADMDFESN 267
            + +E +D   DE+ + +++  EI E + R  Y   ++IDE+EL  ELD L  +      
Sbjct: 119 GLDVERVDETMDEIREQVELGEEISEAISRPLYTGVNEIDEDELDEELDMLAQEEVARKV 178

Query: 266 SVPSYLQPDKETDLDSELNLPAAPS--------GHAAVPANRQQEDE 150
             P    P       ++++LP+ PS        G        Q+EDE
Sbjct: 179 MEPGAAVPAAAP--ATKVSLPSVPSSDMPQQDRGQPVTLGMDQEEDE 223

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>SNF7_DEBHA (Q6BSH2) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 226

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 40/158 (25%), Positives = 76/158 (48%)
 Frame = -3

Query: 623 KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 444
           KA A   LK++K YE     + NQ  +L+    + EG     +TM AMK   + +K +  
Sbjct: 57  KALAKNALKRKKGYEANLMKIENQIDSLETQLTSIEGANLNLETMKAMKQGAQAMKQIHG 116

Query: 443 TVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNS 264
              ++ +++  D++ + +++++EI E + R     + +DE+EL  EL  L+ +       
Sbjct: 117 EYDVDKVENTMDDIREQVELADEISEAISRPVGT-EFVDEDELDEELAMLQEEEKEHKQQ 175

Query: 263 VPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDE 150
            P+   P  +     E  +P  P+ +   PA   ++DE
Sbjct: 176 TPAQKAPVAKVSAPEE-EMPDFPTVNKNKPAASTEDDE 212

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>SNF7_SCHPO (Q9P7F7) Vacuolar sorting protein snf7 (Vacuolar protein|
           sorting-associated protein vps32)
          Length = 222

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 32/127 (25%), Positives = 65/127 (51%)
 Frame = -3

Query: 623 KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 444
           K  A+  LK++KM+E +   +     N++Q  F+ +      +T+ AM+   + +K + +
Sbjct: 57  KRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQR 116

Query: 443 TVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNS 264
            +  + +D + D++ D   +S EI   +     +  +IDE+EL  ELD L+  M+ +S  
Sbjct: 117 GMDADKVDQIMDKIRDQQTISEEISTMISTPVGLNAEIDEDELANELDELQ-QMELDSKM 175

Query: 263 VPSYLQP 243
           + +   P
Sbjct: 176 LGAEKPP 182

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>CHM4C_HUMAN (Q96CF2) Charged multivesicular body protein 4c|
           (Chromatin-modifying protein 4c) (CHMP4c) (Vacuolar
           protein sorting 7-3) (SNF7-3) (hSnf7-3) (SNF7 homolog
           associated with Alix 3)
          Length = 233

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 11/169 (6%)
 Frame = -3

Query: 623 KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 444
           K  A++ LK++K +E Q   +      ++    A E      + +  M  A K +K + +
Sbjct: 62  KRAALQALKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHE 121

Query: 443 TVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEAD------- 285
            + +  ID +  E+ +  D++ EI E   +     DD DE+ELM EL+ LE +       
Sbjct: 122 NMDLNKIDDLMQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKMT 181

Query: 284 ----MDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDE 150
                +  S+S+P+  QP+++  + S      A    AA     ++ED+
Sbjct: 182 NIRLPNVPSSSLPA--QPNRKPGMSS-----TARRSRAASSQRAEEEDD 223

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>SNF7_YARLI (Q6CBS3) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 215

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 1/159 (0%)
 Frame = -3

Query: 623 KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 444
           K  A   LK++K  E Q++ +     +L       E      +TM AM+   K +K +  
Sbjct: 53  KLMAKNALKKKKNLEKQQETVQGSIDSLQTSINTLETANLNLETMKAMQEGAKAMKQIHG 112

Query: 443 TVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEAD-MDFESN 267
            + I+ +D + DE  D + +S E+ E + R Y   +  D+EEL  EL+ALE + ++ E  
Sbjct: 113 NMNIDKVDKIMDETRDQVALSEEVSEAISRPY--ANAYDDEELEDELEALEQETLEGELT 170

Query: 266 SVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDE 150
           +     Q   +    +  +LPAAP+    VPA  + ++E
Sbjct: 171 NAGHVKQDGVQV---TPHDLPAAPN---QVPAEEEDDEE 203

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>CHM4B_XENLA (Q5XGW6) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 222

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
 Frame = -3

Query: 623 KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKA---ANKELKG 453
           K  A++ LK++K YE Q   +      L  + F  E +++A      +K    A K +K 
Sbjct: 60  KRAALQALKRKKRYEKQLAQIDG---TLSTIEFQREALENANTNTEVLKNMGFAAKAMKA 116

Query: 452 MMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFE 273
               + IE +D +  ++ D  +++ EI + + +     +D DE+ELM EL+ LE + + +
Sbjct: 117 AHDNMDIEKVDELMQDIADQQELAQEISDAISKPVGFGEDFDEDELMAELEELEQE-ELD 175

Query: 272 SNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDE 150
            N +   +Q  +   L    N+PAA     A P  ++QE++
Sbjct: 176 KNLLE--VQGPETVPLP---NVPAA--SLPAKPVKKKQEED 209

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>CHM4B_XENTR (Q6GL11) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 222

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
 Frame = -3

Query: 623 KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKA---ANKELKG 453
           K  A++ LK++K YE Q   +      L  + F  E +++A      +K    A K +K 
Sbjct: 60  KRAALQALKRKKRYEKQLAQIDG---TLSTIEFQREALENANTNTEVLKNMGFAAKAMKA 116

Query: 452 MMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFE 273
               + IE +D +  ++ D  +++ EI + + +     +D DE+ELM EL+ LE + + +
Sbjct: 117 AHDNMDIEKVDELMQDIADQQELAQEISDAISKPVGFGEDFDEDELMAELEELEQE-ELD 175

Query: 272 SNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDE 150
            N +   +Q  +   L    N+PAA     A P  ++QE++
Sbjct: 176 KNLLE--VQGPETVPLP---NVPAAVL--PAKPVKKKQEED 209

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>VPS20_YEAST (Q04272) Vacuolar protein sorting protein 20 (Amino acid|
           sensor-independent protein 10) (Charged multivesicular
           body protein 6)
          Length = 220

 Score = 56.2 bits (134), Expect = 9e-08
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 5/176 (2%)
 Frame = -3

Query: 671 KEQIKKT-RPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQ 495
           K Q+K   R  P       +   +LK+    E       +Q  NL+ +    E     +Q
Sbjct: 41  KSQLKDLIRKNPENYKSNMKVRFLLKRIHYQEHLLQQASDQLINLENMVSTLEFKMVEKQ 100

Query: 494 TMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSY----NVPDDID 327
            +  +K  N+ LK + K     ++D + D++ D +   NEI ETL RS     N  DD+D
Sbjct: 101 FINGLKNGNEILKKLNK--EFSNVDELMDDVQDQIAYQNEINETLSRSLVGTSNYEDDLD 158

Query: 326 EEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQ 159
           +     ELDALE++++      P  +   K  ++ S   LP+ P G       R++
Sbjct: 159 K-----ELDALESELN------PEKMNNAKVANMPSTEGLPSLPQGEQTEQKEREE 203

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>CHM4C_BRARE (Q6IQ73) Charged multivesicular body protein 4c|
           (Chromatin-modifying protein 4c) (CHMP4c)
          Length = 224

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 47/169 (27%), Positives = 71/169 (42%), Gaps = 11/169 (6%)
 Frame = -3

Query: 623 KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 444
           K  A++ LK++K YE Q   +      L  + F  E +++A      +K      K M  
Sbjct: 60  KRAALQALKRKKRYEKQLAQIDG---TLSTIEFQREALENANTNTEVLKNMGFAAKAMKT 116

Query: 443 TVRIEDIDSMQDEMMDL---MDVSNEIQETLGRSYNVPDDIDEEELMGELDAL---EADM 282
                DID + D M D+    +++ EI + + R     ++ DE+ELM EL+ L   E D 
Sbjct: 117 AHENMDIDKVDDLMQDITEQQELAQEISDAISRPVGFGEEFDEDELMAELEELEQEELDK 176

Query: 281 DFESNSVPSYLQPDKETDLDSELNLPAAPSG-----HAAVPANRQQEDE 150
           D    S P             ++ LP  PS       A     RQ+EDE
Sbjct: 177 DLLQISGP------------EDVPLPNVPSNPLPKKTAVAQKKRQEEDE 213

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>CHMP7_MOUSE (Q8R1T1) Protein CHMP7|
          Length = 451

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 42/153 (27%), Positives = 70/153 (45%)
 Frame = -3

Query: 683 LARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKD 504
           L++  E+ K+      +   K  A+R LK ++  E + + L+ +   +  +       + 
Sbjct: 258 LSQESERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQT 317

Query: 503 AQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDE 324
            Q    A +A    LK  MK V +E  +S+ D++ +L D  +E+ +TL        D D 
Sbjct: 318 DQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDS 377

Query: 323 EELMGELDALEADMDFESNSVPSYLQPDKETDL 225
           EEL  ELD L  D   E  S+   L+  +ET L
Sbjct: 378 EELEKELDILLQDTTTEPLSL---LETPQETTL 407

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>CHMP7_HUMAN (Q8WUX9) Protein CHMP7|
          Length = 453

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 13/192 (6%)
 Frame = -3

Query: 683 LARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKD 504
           L++  E+ K+      +   K  A+R LK ++  E + + L+ +   +  +       + 
Sbjct: 258 LSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQT 317

Query: 503 AQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDE 324
            Q    A +A    LK  MK V +E  +S+ D++ +L D  +E+ +TL        D D 
Sbjct: 318 DQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDS 377

Query: 323 EELMGELDALEADMDFE-------------SNSVPSYLQPDKETDLDSELNLPAAPSGHA 183
           EEL  ELD L  D   E             +NSVP+    D E  L++EL   +   G  
Sbjct: 378 EELEKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAE--LEAELEKLSLSEG-G 434

Query: 182 AVPANRQQEDEM 147
            VP+++  + ++
Sbjct: 435 LVPSSKSPKRQL 446

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>CHM4B_MOUSE (Q9D8B3) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 224

 Score = 53.1 bits (126), Expect = 8e-07
 Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
 Frame = -3

Query: 623 KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKA---ANKELKG 453
           K  A++ LK++K YE Q   +      L  + F  E +++A      +K    A K +K 
Sbjct: 62  KRAALQALKRKKRYEKQLAQIDG---TLSTIEFQREALENANTNTEVLKNMGYAAKAMKA 118

Query: 452 MMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFE 273
               + I+ +D +  ++ D  +++ EI   + +     ++ DE+ELM EL+ LE + + +
Sbjct: 119 AHDNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQE-ELD 177

Query: 272 SNSVPSYLQPDKETDLDSELNLPAAPS-GHAAVPANRQQEDE 150
            N +        E      + LP  PS    + PA +++E++
Sbjct: 178 KNLL--------EISGPETVPLPNVPSVALPSKPAKKKEEED 211

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>CHM4B_HUMAN (Q9H444) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b) (Vacuolar
           protein sorting 7-2) (SNF7-2) (hSnf7-2) (SNF7 homolog
           associated with Alix 1) (hVps32)
          Length = 224

 Score = 53.1 bits (126), Expect = 8e-07
 Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
 Frame = -3

Query: 623 KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKA---ANKELKG 453
           K  A++ LK++K YE Q   +      L  + F  E +++A      +K    A K +K 
Sbjct: 62  KRAALQALKRKKRYEKQLAQIDG---TLSTIEFQREALENANTNTEVLKNMGYAAKAMKA 118

Query: 452 MMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFE 273
               + I+ +D +  ++ D  +++ EI   + +     ++ DE+ELM EL+ LE + + +
Sbjct: 119 AHDNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQE-ELD 177

Query: 272 SNSVPSYLQPDKETDLDSELNLPAAPS-GHAAVPANRQQEDE 150
            N +        E      + LP  PS    + PA +++E++
Sbjct: 178 KNLL--------EISGPETVPLPNVPSIALPSKPAKKKEEED 211

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>CHM4B_CHICK (Q5ZHP5) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 227

 Score = 53.1 bits (126), Expect = 8e-07
 Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
 Frame = -3

Query: 623 KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKA---ANKELKG 453
           K  A++ LK++K YE Q   +      L  + F  E +++A      +K    A K +K 
Sbjct: 64  KRAALQALKRKKRYEKQLAQIDG---TLSTIEFQREALENANTNTEVLKNMGFAAKAMKA 120

Query: 452 MMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFE 273
               + I+ +D +  ++ +  ++++EI   + +     ++ DE+ELM EL+ LE + + +
Sbjct: 121 AHDNMDIDKVDELMQDIAEQQELADEISTAISKPVGFGEEFDEDELMAELEELEQE-ELD 179

Query: 272 SNSVPSYLQPDKETDLDSELNLPAAPS-GHAAVPANRQQEDE 150
            N +        E      + LP  PS    + PA +++E+E
Sbjct: 180 KNLL--------EISGPETVPLPNVPSISIPSKPAKKKEEEE 213

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>SNF7_YEAST (P39929) Vacuolar sorting protein SNF7 (DOA4-independent|
           degradation protein 1) (Vacuolar protein
           sorting-associated protein VPS32)
          Length = 240

 Score = 53.1 bits (126), Expect = 8e-07
 Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
 Frame = -3

Query: 623 KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 444
           K  A   LK++K  E     +     +++Q  F+ E      +TM AM+   K +K +  
Sbjct: 60  KVMAKNALKKKKTIEQLLSKVEGTMESMEQQLFSIESANLNLETMRAMQEGAKAMKTIHS 119

Query: 443 TVRIEDIDSMQDEMMDLMDVSNEIQETLGRS-YNVPDDIDEEELMGELDALEADMDFESN 267
            + I+ +D   DE+ + +++ +EI + + R      +++DE+EL  ELD L  +   +  
Sbjct: 120 GLDIDKVDETMDEIREQVELGDEISDAISRPLITGANEVDEDELDEELDMLAQENANQET 179

Query: 266 SVPSYLQPDKETDLDSELNLPAAPS-----GHAAVPANRQQEDE 150
           S       +     +++++LP+ PS        +V    ++EDE
Sbjct: 180 SKIVNNNVNAAPISENKVSLPSVPSNKIKQSENSVKDGEEEEDE 223

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>CHMP7_PONPY (Q5R812) Protein CHMP7|
          Length = 453

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 38/142 (26%), Positives = 64/142 (45%)
 Frame = -3

Query: 683 LARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKD 504
           L++  E+ K+      +   K  A+R LK ++  E + + L+ +   +  +       + 
Sbjct: 258 LSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQT 317

Query: 503 AQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDE 324
            Q    A +A    LK  MK V +E  +S+ D++ +L D  +E+ +TL        D D 
Sbjct: 318 DQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDS 377

Query: 323 EELMGELDALEADMDFESNSVP 258
           EEL  ELD L  D   E   +P
Sbjct: 378 EELEKELDILLQDTTKEPLDLP 399

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>CHMP7_CHICK (Q5ZJB7) Protein CHMP7|
          Length = 448

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 44/179 (24%), Positives = 80/179 (44%)
 Frame = -3

Query: 683 LARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKD 504
           L++  E+ K       +   K  A+R LK ++  E + + L+++   +  +       + 
Sbjct: 256 LSQEAEKCKDDARSACRAGKKQLALRCLKSKRRTERRIEELHSKLDAVQGILDRIYASQT 315

Query: 503 AQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDE 324
            Q    A +A    LK  MK V +E  +++ D++ +L D  +E+ +TL  +     ++D 
Sbjct: 316 DQMVFNAYQAGVGALKLSMKDVTVEKAENLVDQIQELCDTQDEVAQTLAGAGVNGLEMDS 375

Query: 323 EELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDEM 147
           EEL  ELD+L  D    S   P +L P           +P   SG A   ++ + E E+
Sbjct: 376 EELEKELDSLLQD----SAKEPVHLHP-----------VPQKDSGFAGAISDAELEAEL 419

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>CG301_HUMAN (P59074) Protein CGI-301|
          Length = 171

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 3/147 (2%)
 Frame = -3

Query: 623 KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 444
           K  A++ LK++K YE Q   +      ++    A E      + +  M +A K  K    
Sbjct: 22  KPAALQALKRKKRYEKQLAQIDGTLSTIEFQQQALENANTNTEVLKNMGSAAKAKKAAHD 81

Query: 443 TVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNS 264
            + I+ +D +  ++ D  ++  EI   + +     +  DE+ELM EL+ LE +       
Sbjct: 82  NMDIDKVDELMQDIADQQELGEEISTAISKPVGFGEKSDEDELMAELEELEQE------- 134

Query: 263 VPSYLQPDK---ETDLDSELNLPAAPS 192
                +PDK   E      + LP  PS
Sbjct: 135 -----EPDKNLLEVSGPETVPLPNVPS 156

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>DNAK_WOLTR (Q5GSE1) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 635

 Score = 36.6 bits (83), Expect = 0.073
 Identities = 25/110 (22%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
 Frame = -3

Query: 671 KEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASE------GI 510
           +++I+    G   E+   R +R  +++   + +R          D +  ++E      G 
Sbjct: 486 EQKIRIQSSGGLSESEINRMIREAEEKAQEDEKRKKFVEVKNQADSLVHSTEKSLKEYGD 545

Query: 509 KDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETL 360
           K + +  +A++ A  ELK   K+  I+D+DS+Q ++ +L  +S ++ ET+
Sbjct: 546 KVSPEDKSAIENAVNELKEASKSDNIDDVDSIQQKITNLSQLSMKLGETI 595

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>NU159_YEAST (P40477) Nucleoporin NUP159 (Nuclear pore protein NUP159)|
          Length = 1460

 Score = 36.6 bits (83), Expect = 0.073
 Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
 Frame = -3

Query: 407  EMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALE-------ADMDFESNSVPSYL 249
            E  D M ++++  E++  SY+  +DI+ +EL    +A +       AD D +++   +Y 
Sbjct: 1059 ESDDNMSLNSDRDESISESYDKLEDINTDELPHGGEAFKAREVSASADFDVQTSLEDNYA 1118

Query: 248  QPDKETDL-----DSELNLPAAPSGHAAVPANRQQEDEMGLPTVP 129
            +   +TDL     ++E+   A P  H +    +++  + GL T P
Sbjct: 1119 ESGIQTDLSESSKENEVQTDAIPVKHNSTQTVKKEAVDNGLQTEP 1163

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>SYS_VIBPA (Q87QP1) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 435

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
 Frame = -3

Query: 488 TAMKAANKELKGMMKTVRI--EDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEEL 315
           TA K A +  K  ++T+R   E   S+Q E+ +L    N I + +G+     D    EE+
Sbjct: 14  TAAKLARRGFKLDVETIRKLEEQRKSIQVEVENLQSTRNSISKQIGQKMAAGDKEGAEEI 73

Query: 314 MGELDALEADMDFESNSVPSYL-QPDKETDLDSELNLPAAPSGHAAVPANRQQEDEM 147
             ++  L +D+D +   +   + Q D+ T     L++P  P+    VP  + + D +
Sbjct: 74  KKQIGTLGSDLDAKKVELEQVMAQLDEFT-----LSVPNIPADE--VPDGKDENDNV 123

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>SMC_METJA (Q59037) Chromosome partition protein smc homolog|
          Length = 1169

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 30/155 (19%), Positives = 76/155 (49%), Gaps = 9/155 (5%)
 Frame = -3

Query: 671 KEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQT 492
           K++IK+T+    ++ ++ R   I K++++ E + + + N  Y  +++    E I +++  
Sbjct: 334 KKEIKETQ----KKIIENRDSIIEKEQQIKEIE-EKIKNLNYEKERL---KEAIAESESI 385

Query: 491 MTAMKAANKEL-----KGMMKTVRIE----DIDSMQDEMMDLMDVSNEIQETLGRSYNVP 339
           +  +K +  E+     K   +  R++    D+D++ +     ++ +NE+ + L       
Sbjct: 386 IKHLKESEMEIADEIAKNQNELYRLKKELNDLDNLINRKNFEIEKNNEMIKKLKEELETV 445

Query: 338 DDIDEEELMGELDALEADMDFESNSVPSYLQPDKE 234
           +D+D + L  EL+ L  +++F    +    +  KE
Sbjct: 446 EDVDTKPLYLELENLNVEIEFSKRGIKELEEKKKE 480

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>DNAK_WOLPM (Q73GL7) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 640

 Score = 33.5 bits (75), Expect = 0.62
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
 Frame = -3

Query: 599 KQRKMYE--GQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIED 426
           K++K  E   Q D L + T    + +    G K + +  +A++ A  ELK + K+  I+D
Sbjct: 522 KRKKFIEVKNQADSLVHST----EKSLTEYGDKVSPEDRSAIENAVNELKEVSKSDNIDD 577

Query: 425 IDSMQDEMMDLMDVSNEIQETL 360
            DS+Q ++ +L  +S ++ E +
Sbjct: 578 ADSIQQKVTNLSQLSMKLGEAM 599

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>YJE9_YEAST (P47048) Hypothetical 52.8 kDa protein in MTR4-GYP6 intergenic|
           region
          Length = 450

 Score = 33.5 bits (75), Expect = 0.62
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
 Frame = -3

Query: 497 QTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEE 318
           QT++      K + G + +   E ++ + DE+ +  D + E+ + L       D+  EEE
Sbjct: 321 QTLSESNEVIKSINGYIGST--EKVEDLLDEIKEGHDRTEEVNDLLAHYNKGQDEEAEEE 378

Query: 317 LMGELDALEAD---MDFESNSVPSYLQPDKET--DLDSELNLPAAPSGHAAVPANRQQED 153
           +  EL+ LE D    + E N      +P + +  DL   LN     +    V  N   ++
Sbjct: 379 IERELEQLELDEKNNNKEENKNQDLHEPKESSSEDLLKRLNNLKINTNEGPVQDNENHDN 438

Query: 152 EM 147
           E+
Sbjct: 439 EI 440

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>MLP2_YEAST (P40457) Protein MLP2 (Myosin-like protein 2)|
          Length = 1679

 Score = 33.1 bits (74), Expect = 0.81
 Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
 Frame = -3

Query: 524 ASEGIKDAQQTMTAMKAAN----KELKGMMKTVRIED---IDSMQDEMMDLMDVSNEIQE 366
           ++E  K    ++T+M+AA     +EL+  + + ++E+   I +++ E++       + + 
Sbjct: 595 STEENKANTNSVTSMEAAREKKIRELEAELSSTKVENSAIIQNLRKELLIYKKSQCKKKT 654

Query: 365 TLGRSYNVPDDIDEEELMGE--LDALEADMDFESNSVPSYLQPDKE 234
           TL    N      E+E M E  +D L+A+++ + + VPSY+  +KE
Sbjct: 655 TLEDFENFKGLAKEKERMLEEAIDHLKAELEKQKSWVPSYIHVEKE 700

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>MDN1_YEAST (Q12019) Midasin (MIDAS-containing protein)|
          Length = 4910

 Score = 33.1 bits (74), Expect = 0.81
 Identities = 26/103 (25%), Positives = 47/103 (45%)
 Frame = -3

Query: 518  EGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVP 339
            EG      T     A   +L+ + + + I+D D  + E+     V +   E +       
Sbjct: 4495 EGANTETDTQALGSATQDQLQTIDEDMAIDD-DREEQEVDQKELVEDADDEKM------- 4546

Query: 338  DDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELN 210
             DIDEEE++ ++DA +A+ D +S       +   E D ++EL+
Sbjct: 4547 -DIDEEEMLSDIDAHDANNDVDSKKSGFIGKRKSEEDFENELS 4588

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>RPOE_BACSU (P12464) DNA-directed RNA polymerase delta subunit (RNAP delta|
           factor)
          Length = 173

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = -3

Query: 500 QQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVS-NEIQETLGRSYNVPDDIDE 324
           ++T   +KA  K+ K  ++    ED+D  + E +D  D+  +E++E L       DD DE
Sbjct: 89  EETQPTVKAKKKKAKKAVE----EDLDLDEFEEIDEDDLDLDEVEEELDLE---ADDFDE 141

Query: 323 EELMGELDALEADMDFESNSVPSYLQPDKE 234
           E+L  + D LE + D        Y   ++E
Sbjct: 142 EDLDEDDDDLEIEEDIIDEDDEDYDDEEEE 171

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>CUL6_CAEEL (Q21346) Cullin-6|
          Length = 729

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
 Frame = -3

Query: 683 LARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDM--LYNQTYNLDQVAFASEGI 510
           LARY +Q+ K       E    +A+ +LK    Y  ++D+  LY Q +  +++   S   
Sbjct: 382 LARYCDQLLKKNSKVQDETALDKALTVLK----YISEKDVFQLYYQNWFSERIINNSSAS 437

Query: 509 KDAQQTMTAMKAANKELKGMMKTVR-IEDIDSMQDEMMDLMDVSNE 375
            DA++       A + L+     V+ +ED    +D   +  D+  E
Sbjct: 438 DDAEEKFITNLTATEGLEYTRNLVKMVEDAKISKDLTTEFKDIKTE 483

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>SQT1_YEAST (P35184) Ribosome assembly protein SQT1|
          Length = 431

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
 Frame = -3

Query: 413 QDEMMDLMDVSNEIQETLGRSYNVPDDI-----DEEELMG-ELDALEADMDFESNSVPSY 252
           Q+E +   +V  EI  T+    +VP DI     D++E+M  + +ALE DM   SN+  +Y
Sbjct: 4   QEEFITTEEVEQEIVPTVEVEQDVPVDIEGENDDDDEMMNDDEEALEVDM---SNNSLTY 60

Query: 251 LQPDKETD----LDSELNLPAAPSG 189
              DK TD    +    NLP   +G
Sbjct: 61  F--DKHTDSVFAIGHHPNLPLVCTG 83

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>ECX1_METMA (Q8PTT8) Probable exosome complex exonuclease 1 (EC 3.1.13.-)|
          Length = 493

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
 Frame = -3

Query: 512 IKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDD 333
           +++  +     K A KE+        I +    + E  ++ ++S E++  +  S  +PD 
Sbjct: 241 VEEVSEETAPEKGAEKEVLEPSPVAAIVEETPEEAEEPEV-EISEEVEAEILASEVIPDF 299

Query: 332 IDE--EELMGELDALEADMD-----FESNSVPSYLQPDKETDLDSELNL 207
            DE  EE+  EL+  E D++     FE  ++    +P+++ + D E +L
Sbjct: 300 EDELEEEIEEELEESEEDLETEEEEFEEEALEEEAEPEEDLEEDLEEDL 348

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>APEA_DICDI (P51173) DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)|
           (Class II apurinic/apyrimidinic(AP)-endonuclease)
          Length = 361

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 332 IDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQED 153
           +DEEE++ + D  E   + E   V    + DK+  L  +     AP+  AA     + ED
Sbjct: 10  MDEEEILKKEDGSETTSEEEKEEVEEEEEEDKKRKLVKKTPAKKAPAKKAAAKKKSKDED 69

Query: 152 E 150
           E
Sbjct: 70  E 70

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>RPOB_THETN (Q8R7U6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1234

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
 Frame = -3

Query: 485  AMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETL------GRSYNVPDDIDE 324
            + K   KEL+ +   V++   D  +  + +  D  +++ +        GR    P+++ E
Sbjct: 1139 SFKVLVKELQSLALDVKVITEDGQEIPIKEFEDDDDDVPDATLNINIEGREDAPPEEVYE 1198

Query: 323  EELMGELDALEADMDFESNSVPSYLQPDKETDLDSE 216
            EE   E + L  D+DFE         PD   D+DSE
Sbjct: 1199 EEYEEEPEELPEDIDFE---------PD-NFDIDSE 1224

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>OMPA_THEMA (Q01969) Outer membrane protein alpha precursor|
          Length = 400

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 27/126 (21%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
 Frame = -3

Query: 635 QEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELK 456
           +E +  +   I    +++E     LYN+   L++    ++ I D +  ++A   + ++  
Sbjct: 237 EEKLSRKDEEISAMVELHEKDIINLYNKVAALNEDL--NKKILDTKAELSAKIESQEKTL 294

Query: 455 GMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEE---LMGELDALEAD 285
            M+ T  ++    + DE+  L +   EIQ+T+        D+ E++   L G+  +LE D
Sbjct: 295 NMVYTKLLDTESKLNDEISALKEKDAEIQKTV--------DLHEQDIVNLYGKTSSLEED 346

Query: 284 MDFESN 267
           ++ + N
Sbjct: 347 LNMKYN 352

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>DNAK_EHRRW (Q5HAY1) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 645

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 21/85 (24%), Positives = 44/85 (51%)
 Frame = -3

Query: 599 KQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDID 420
           ++RK +   ++   N  ++ ++ +    G K +      ++ A ++LK  +    IED D
Sbjct: 525 EKRKKFVEVKNNAENLVHSTEK-SLKEHGDKISNADKLDIENAIRDLKDCISKDNIEDTD 583

Query: 419 SMQDEMMDLMDVSNEIQETLGRSYN 345
           +MQ+++  LM VS ++ E L  + N
Sbjct: 584 TMQNKLDHLMKVSMKLGEALYSNTN 608

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>DNAK_EHRRG (Q5FFM4) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 645

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 21/85 (24%), Positives = 44/85 (51%)
 Frame = -3

Query: 599 KQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDID 420
           ++RK +   ++   N  ++ ++ +    G K +      ++ A ++LK  +    IED D
Sbjct: 525 EKRKKFVEVKNNAENLVHSTEK-SLKEHGDKISNADKLDIENAIRDLKDCISKDNIEDTD 583

Query: 419 SMQDEMMDLMDVSNEIQETLGRSYN 345
           +MQ+++  LM VS ++ E L  + N
Sbjct: 584 TMQNKLDHLMKVSMKLGEALYSNTN 608

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>LRC45_MOUSE (Q8CIM1) Leucine-rich repeat-containing protein 45|
          Length = 670

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
 Frame = -3

Query: 683 LARYKEQIKKTRPGPAQEAVKARAM-RILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIK 507
           L+R K  +   R    +E +KAR   R+ +Q ++       L  +   L Q    ++G  
Sbjct: 469 LSRMKAAVLSERGQAEEELIKARNQARLEEQHRLAH-----LEEKIRLLAQARDEAQGTC 523

Query: 506 DAQQTMTAMKAA-----NKELKGM---MKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRS 351
             Q+ M A   A     N +++G    ++ ++ E I+  Q+++ ++  V  E+QE +GR 
Sbjct: 524 VQQKQMVAESQARVSQLNLQMEGQQRRLEELQQELINKDQEKVAEVARVRVELQEQMGRM 583

Query: 350 YNVPDDIDEEELMGELDALEADM 282
               D + +E L  ++ ALE  M
Sbjct: 584 Q--ADLVAQEALREKVAALERQM 604

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>TIG_BACSU (P80698) Trigger factor (TF) (Vegetative protein 2) (VEG2)|
          Length = 423

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 25/112 (22%), Positives = 50/112 (44%)
 Frame = -3

Query: 617 RAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTV 438
           R ++  +QR   +G    LY Q    D+ A   +  +DA++ +     +N  L+ + K  
Sbjct: 314 RMLKEFEQRLQMQGMNLELYTQFSGQDEAALKEQMKEDAEKRV----KSNLTLEAIAKAE 369

Query: 437 RIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADM 282
            +E  D   D  +  M            +YN+P + + ++ +G  DA++ D+
Sbjct: 370 NLEVSDEEVDAELTKM----------AEAYNMPVE-NIKQAIGSTDAMKEDL 410

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>HDA3_YEAST (Q06623) HDA1 complex subunit 3 (Histone deacetylase complex 1|
           subunit 3)
          Length = 655

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 27/129 (20%), Positives = 61/129 (47%), Gaps = 22/129 (17%)
 Frame = -3

Query: 527 FASEGIKDAQQTMTAMKAANK--------ELKGMMKTVRIE----DIDSMQDEMMDLMDV 384
           F++E  K  ++  T ++  N+        E++  +K  +IE    DI++++  +M   + 
Sbjct: 456 FSNEDEKIIKEYETVLRTNNENLNRSHELEVENNLKFSQIETLEKDIETLKGSLMAQGET 515

Query: 383 SNEIQETLGRSYNVPDDIDEEELMG----------ELDALEADMDFESNSVPSYLQPDKE 234
            +++++   ++ NV D+I++EE +           E +   A      N   ++   +K+
Sbjct: 516 LSKLKDAFVKTDNVQDEIEKEERVSVSRDTEKKYMEQEIKRAVDAIRENEEETHKLNEKQ 575

Query: 233 TDLDSELNL 207
             L+SEL L
Sbjct: 576 NGLESELKL 584

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>TRI37_HUMAN (O94972) Tripartite motif protein 37 (Mulibrey nanism protein)|
          Length = 964

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -3

Query: 428 DIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSV 261
           D+D + ++ ++ +D S+    +   S    +DIDEE + GE D    +M+ E   +
Sbjct: 519 DLDLVYEDEVNQLDGSSSSASSTATSNTEENDIDEETMSGENDVEYNNMELEEGEL 574

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>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau|
            kinase)
          Length = 1321

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 24/59 (40%), Positives = 28/59 (47%)
 Frame = +2

Query: 155  PPAAGSPGLLHDHLVQQVS*AQNQDQSPCLVGGTMGLNSIQSPYRLPKHQARP*VPPRR 331
            PPA  SP      L    S A+N   SP     +  L+  +SP   P HQARP VPP R
Sbjct: 1227 PPAPRSP-----RLPASTSAARNASASP----RSQSLSRRESPS--PSHQARPGVPPPR 1274

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>ZN198_MOUSE (Q9CU65) Zinc finger protein 198 (Fragment)|
          Length = 988

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -3

Query: 422 DSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQP 243
           D +  E++ + D+  E +E    + N+   I E +++G      +D D +SN       P
Sbjct: 555 DPLDSELLTMTDMMTE-EEGKAEASNINSVIIETDIIGSDLTKNSDPDIQSN------MP 607

Query: 242 D--KETDLDSELNLPAA 198
           D   E DLD E++ P A
Sbjct: 608 DVPYEPDLDIEIDFPRA 624

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>DPO5_YEAST (P39985) DNA polymerase V (EC 2.7.7.7) (POL V)|
          Length = 1022

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 26/133 (19%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
 Frame = -3

Query: 605  ILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIED 426
            ILK R+  +G    L+      +++   ++  +D  +T      +  E +    +   ++
Sbjct: 688  ILKARENKQGFAQ-LFEGEEEFEEIKEENDASEDESKT-----GSESESESESDSDDADE 741

Query: 425  IDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEA-DMDFESNSVPSYL 249
             D   +   D++++  E    L ++ N+PD+I  ++   +LD LE    D   +     +
Sbjct: 742  KDEEDEANEDILNIDKEATSALVKALNLPDNIVNDKGEVDLDQLEGLSDDGGDDEDEESM 801

Query: 248  QPDKETDLDSELN 210
              +K  +LD +L+
Sbjct: 802  DDEKMMELDDQLS 814

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>KIF5C_HUMAN (O60282) Kinesin heavy chain isoform 5C (Kinesin heavy chain|
           neuron-specific 2)
          Length = 957

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 26/120 (21%), Positives = 55/120 (45%)
 Frame = -3

Query: 671 KEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQT 492
           + Q+++++   ++E  K RA   + +    + +++       +L ++  A E  K  +Q 
Sbjct: 654 RRQLEESQDSLSEELAKLRAQEKMHEVSFQDKEKE-------HLTRLQDAEEMKKALEQQ 706

Query: 491 MTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELM 312
           M + + A+++    ++   IE+   + DE+ DL       QE L   YN     D+E  M
Sbjct: 707 MESHREAHQKQLSRLRD-EIEEKQKIIDEIRDLNQKLQLEQEKLSSDYNKLKIEDQEREM 765

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>CTGE5_MOUSE (Q8R311) Cutaneous T-cell lymphoma-associated antigen 5 homolog|
           (cTAGE-5 protein) (Meningioma-expressed antigen 6)
          Length = 779

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 22/108 (20%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
 Frame = -3

Query: 614 AMRILKQRKMYEGQRDMLYNQTYNLDQV-AFASEGIKDAQQTMTAMKAANKELKGMMKTV 438
           A ++    K  EG+R+ +Y Q   +DQV    +E IK  +    ++++   E +      
Sbjct: 297 AAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFE------ 350

Query: 437 RIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDD--IDEEELMGELD 300
              +   +Q ++  + ++  E +  L R   V ++  +++EE + ++D
Sbjct: 351 --SESQKLQQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKLSKVD 396

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>DBP9_SCHPO (O60080) ATP-dependent RNA helicase dbp9 (EC 3.6.1.-)|
          Length = 595

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 350 YNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSE 216
           Y +    DE  +MGE++ LE ++DF    V S  QP  +   D E
Sbjct: 311 YQIIIATDESGMMGEIEELENNVDFVEEEVISTDQPTLDKMKDQE 355

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>GVPD2_HALSA (Q9HHT2) Protein gvpD 2|
          Length = 492

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = +2

Query: 155 PPAAGSPGLLHDHLVQQVS*AQNQDQS---PCLVGGTMGLNSIQSPYRLPKHQARP 313
           PP  GSPGLLH+ L   +S A             G T   +    P RLP H   P
Sbjct: 318 PPKEGSPGLLHNDLSAVLSKAVFDTHCHVFETYAGPTRDHDDAVDPDRLPGHDTTP 373

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>DYNA_CHICK (P35458) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued)
          Length = 1224

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
 Frame = -3

Query: 680 ARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDA 501
           AR KE + + R   A E  K   +++ KQ +    + + L  Q   L       E +K A
Sbjct: 361 ARLKEALVRMRDLSASE--KQEHVKLQKQMEKKNTELESLRQQREKLQ------EEVKQA 412

Query: 500 QQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLG---RSYNVPDDI 330
           ++T+  +K       G       E ++++ +  +DL +   E++ET+G       + D++
Sbjct: 413 EKTVDELKEQVDAALGAE-----EMVETLTERNLDLEEKVRELRETVGDLEAMNEMNDEL 467

Query: 329 DEEELMGELDALE 291
            E     EL+  E
Sbjct: 468 QENARETELELRE 480

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>DNAJM_MYCPN (P75354) DnaJ-like protein MG200 homolog|
          Length = 910

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
 Frame = -3

Query: 509 KDAQQTMTAMKA----ANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNV 342
           K  ++T T  K      +K+ +    T    D+D+  ++     D  ++I +   R    
Sbjct: 110 KKKEKTKTKKKGWFWGKSKQEESTSDTTEYADVDAGLEDYPPQSDYPDDIPDVDARI--- 166

Query: 341 PDDIDEEELMGELDALEADMDFESN----SVPSYLQPDKETDLDSELNLPAA 198
            +++D+     ++  ++A MD+E N    +  S + PD +  L  E N  +A
Sbjct: 167 -EEVDQSAYADDIPDVDAGMDWEQNAEVANSASEIIPDVDAGLADEFNTSSA 217

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>UTRO_HUMAN (P46939) Utrophin (Dystrophin-related protein 1) (DRP1) (DRP)|
          Length = 3433

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
 Frame = -3

Query: 656  KTRPGPAQEAVK-ARAMRILKQRKMYEGQRDMLYNQTYNLD-QVAFASEGIKDAQQTMTA 483
            KT   P + A K A+AMR  KQ    + + + L   T N   QV  A E ++D Q  M  
Sbjct: 2645 KTELTPEERAQKIAKAMR--KQSSEVKEKWESLNAVTSNWQKQVDKALEKLRDLQGAMDD 2702

Query: 482  MKAANKELKGMM---KTVRIEDIDSMQDEMMDLMDVSNEI 372
            + A  KE + +    K V    IDS+QD +  +M    EI
Sbjct: 2703 LDADMKEAESVRNGWKPVGDLLIDSLQDHIEKIMAFREEI 2742

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>SYT_LEIXX (Q6AFC3) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 695

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 23/75 (30%), Positives = 36/75 (48%)
 Frame = -3

Query: 647 PGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAAN 468
           P P Q  ++ARA R  +    +  + D+L      +DQVA   E   D  +++ AM+  N
Sbjct: 5   PSPPQAGLRARAARAFRLELTHPFRHDLL-----GVDQVADGFEFFTD--RSVVAMR-VN 56

Query: 467 KELKGMMKTVRIEDI 423
            ELK +   V   D+
Sbjct: 57  GELKDLATIVTTTDV 71

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>TIG_STRMU (Q8CWZ6) Trigger factor (TF)|
          Length = 427

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 30/148 (20%), Positives = 64/148 (43%), Gaps = 1/148 (0%)
 Frame = -3

Query: 680 ARYKEQIKKTRPGPAQEAVKARAMRI-LKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKD 504
           A+Y+++++ T+     +AV+A A+ + +   ++ E   +M++      D+V  A +    
Sbjct: 270 AKYRKELEATKETAYNDAVEAAAIDLAVANAEIVELPEEMIH------DEVQRAMQEFMG 323

Query: 503 AQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDE 324
             Q          +L G  +    ED+    +   D    +N + E + ++     +  +
Sbjct: 324 NMQRQGISSEMYFQLTGTTE----EDLRKQYEADADKRVKTNLVIEAVAKAEGF--EATD 377

Query: 323 EELMGELDALEADMDFESNSVPSYLQPD 240
           EE+  E+  L  +   E+  V S L PD
Sbjct: 378 EEIEKEISDLATEYKMEAEQVRSLLSPD 405

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>EZRA_BACSU (O34894) Septation ring formation regulator ezrA|
          Length = 562

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 17/60 (28%), Positives = 34/60 (56%)
 Frame = -3

Query: 503 AQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDE 324
           A++T++ +K    E   ++KT  I  I S   EM++  +  + IQET+ +   +P +++E
Sbjct: 415 ARETLSNLKKTISETARLLKTSNIPGIPSHIQEMLE--NAHHHIQETVNQLNELPLNMEE 472

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>SYS_LACJO (Q74HZ5) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 436

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -3

Query: 539 DQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMM 399
           DQ+A A    +DA   + AM+   KE+K + K   +ED+   Q+ ++
Sbjct: 57  DQIAQAKRNKEDASDAIKAMREVGKEIKDLDK--EVEDLTQKQNYIL 101

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>RPOB_DEHSC (Q3ZX01) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1273

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
 Frame = -3

Query: 512  IKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMD-VSNEI-QETLGRSYNVP 339
            +K+ Q    A++  N+E+K        E + S+ +  +   D +S EI  ETL   Y   
Sbjct: 1186 VKELQSLGLAVEVINEEVK----IAPSEKVSSLNEGNLPASDEISAEILPETL---YANT 1238

Query: 338  DDIDEEELMGELDALEADMDFESN 267
            +DI E+ +M  +DA + D+   SN
Sbjct: 1239 EDISEDSMMSVIDADDQDLVVSSN 1262


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,022,349
Number of Sequences: 219361
Number of extensions: 1768377
Number of successful extensions: 5632
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 5387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5608
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result