ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LNT_PSEAE (Q9ZI86) Apolipoprotein N-acyltransferase (EC 2.3.1.-)... 30 3.7
2Y344_CHLMU (Q9PKW7) Hypothetical zinc metalloprotease TC0344 (EC... 30 4.9
3URE2_BACSU (P71035) Urease beta subunit (EC 3.5.1.5) (Urea amido... 30 4.9
4RG84C_DROME (P40809) GTPase-activating protein RacGAP84C (Protei... 30 6.4
5IBB_HORVU (P12940) Bowman-Birk type trypsin inhibitor 30 6.4
6URE23_STRCO (O86507) Urease gamma/beta subunit (EC 3.5.1.5) (Ure... 29 8.3
7K1H7_HUMAN (O76014) Keratin, type I cuticular Ha7 (Hair keratin,... 29 8.3

>LNT_PSEAE (Q9ZI86) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP|
           N-acyltransferase) (Copper homeostasis protein cutE
           homolog)
          Length = 511

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = -1

Query: 572 GMRGTQHRAVMWRAWKEG------GTGFLYWGTNCYEKAMIPSAEI 453
           G+RG   ++ +WR W  G      GT ++Y   + Y  A +P A +
Sbjct: 45  GLRGLPGKSALWRGWWYGFGAFGAGTSWIYVSIHDYGAASVPLASL 90



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>Y344_CHLMU (Q9PKW7) Hypothetical zinc metalloprotease TC0344 (EC 3.4.24.-)|
          Length = 619

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -1

Query: 467 PSAEICFRRGLPPGDGVLFYPGEVFSSSKEPVASLRLERILS 342
           PS E   ++GL PGD +    G+V+S +K   +S  L+R LS
Sbjct: 146 PSLE---QKGLRPGDRIFLCNGQVYSGNKMAFSSSLLDRKLS 184



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>URE2_BACSU (P71035) Urease beta subunit (EC 3.5.1.5) (Urea amidohydrolase beta|
           subunit)
          Length = 124

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = -1

Query: 455 ICFRRGLPPGDGVLFYPGEVFSSSKEPVASLRLERILSGMQDIEYLNLYSSKYGREEALA 276
           I  R  +P G  V F PGE  + S   +   +  R L+GM D      +  + G+E+ LA
Sbjct: 57  IGMRLDVPSGTSVRFEPGEQKTVSLVEIRGRKTIRGLNGMAD-----TFIDERGKEKTLA 111

Query: 275 LLEKTG 258
            L++ G
Sbjct: 112 NLKQAG 117



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>RG84C_DROME (P40809) GTPase-activating protein RacGAP84C (Protein rotund|
           RacGAP)
          Length = 384

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 175 LRAAMGTCHCRSFLPLQHICCCTWLVIHCISQ 80
           +R AM +  CR+     HI CC  L ++CI Q
Sbjct: 108 IRFAMASLRCRACPLRCHIGCCRQLTVNCIPQ 139



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>IBB_HORVU (P12940) Bowman-Birk type trypsin inhibitor|
          Length = 124

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +2

Query: 143 TTMTGTHGCPKNCR-CGIPHRASRRLAHDHVHSDPG 247
           T M     CPK C+ CG     SRR+  D    DPG
Sbjct: 24  TCMDEVFECPKTCKSCGPMGDPSRRICQDQYVGDPG 59



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>URE23_STRCO (O86507) Urease gamma/beta subunit (EC 3.5.1.5) (Urea|
           amidohydrolase gamma/beta subunit)
          Length = 227

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 23/70 (32%), Positives = 29/70 (41%)
 Frame = -1

Query: 446 RRGLPPGDGVLFYPGEVFSSSKEPVASLRLERILSGMQDIEYLNLYSSKYGREEALALLE 267
           R  +P G  V F PGE       P+   R+    +G+ D        +   REEAL    
Sbjct: 163 RLAVPAGSSVRFGPGERVEVGLVPIGGARVAIGFAGLVD----GPLDAPGAREEALRRAA 218

Query: 266 KTGAYLGPDR 237
             G YLG DR
Sbjct: 219 ACG-YLGADR 227



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>K1H7_HUMAN (O76014) Keratin, type I cuticular Ha7 (Hair keratin, type I Ha7)|
          Length = 449

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 420 PVAWRKAASETDLCTWNHSLLVAVG-TPVEKSCATLLPCSPHHCPMLGSAH 569
           PVA   AAS   L    H+  V VG TP+ +    L P S   CP+ G+ H
Sbjct: 34  PVAEANAASMCLLANVAHANRVRVGSTPLGRPSLCLPPTSHTACPLPGTCH 84


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,022,393
Number of Sequences: 219361
Number of extensions: 1963685
Number of successful extensions: 5272
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5270
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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