ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18l24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464968.1| Oryza sativa (japonica cultivar-group), mRNA 78 4e-11
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
3dbj|AP005533.3| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
4dbj|AP004001.3| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
5dbj|AK064078.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 4e-11
6gb|DQ158856.1| Bigelowiella natans nucleomorph chromosome 1, par... 44 0.62
7dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.62
8emb|AL772179.17| Mouse DNA sequence from clone RP23-100B18 on ch... 44 0.62
9gb|AC026261.8| Homo sapiens chromosome 8, clone RP11-610E3, comp... 42 2.4
10emb|AL359641.10| Human DNA sequence from clone RP11-402K9 on chr... 42 2.4
11emb|AL136305.14| Human DNA sequence from clone RP1-259A10 on chr... 42 2.4
12gb|AC093302.2| Homo sapiens chromosome 5 clone RP11-60A8, comple... 42 2.4
13dbj|AP001978.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.4
14ref|NM_001003870.1| Danio rerio zgc:110448 (zgc:110448), mRNA 40 9.6
15gb|AY648792.1| Danio rerio myosin-binding subunit of myosin phos... 40 9.6
16ref|NM_148955.2| Homo sapiens sorting nexin 1 (SNX1), transcript... 40 9.6
17ref|NM_003099.3| Homo sapiens sorting nexin 1 (SNX1), transcript... 40 9.6
18ref|NM_152826.2| Homo sapiens sorting nexin 1 (SNX1), transcript... 40 9.6
19gb|AC121965.3| Mus musculus BAC clone RP24-262G23 from chromosom... 40 9.6
20gb|DQ249176.1| Homo sapiens isolate 218CLS51 haplotype HLA-B1402... 40 9.6
21gb|DQ249173.1| Homo sapiens isolate 135CLS51 haplotype HLA-B1402... 40 9.6
22emb|AL590668.5| Human DNA sequence from clone RP11-463L20 on chr... 40 9.6
23emb|AL356141.9| Human DNA sequence from clone RP11-269L3 on chro... 40 9.6
24gb|AC087343.4| Homo sapiens chromosome 8, clone RP11-734J24, com... 40 9.6
25gb|AY490256.1| Desulfuromonas acetoxidans citrate synthase (gltA... 40 9.6
26gb|AC091151.11| Homo sapiens chromosome 18, clone RP11-749H17, c... 40 9.6
27gb|AC110054.4| Homo sapiens chromosome 15, clone CTD-2116N17, co... 40 9.6
28gb|AC013652.8| Homo sapiens chromosome 15, clone RP11-462P6, com... 40 9.6
29gb|AC100840.2| Homo sapiens chromosome 15, clone RP11-537K8, com... 40 9.6
30gb|AC021517.9| Homo sapiens chromosome 18, clone RP11-309E23, co... 40 9.6
31gb|AE016826.1| Buchnera aphidicola str. Bp (Baizongia pistaciae)... 40 9.6
32dbj|AK045230.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 40 9.6
33gb|AC079988.6| Homo sapiens BAC clone RP11-795C1 from 2, complet... 40 9.6
34gb|AC154592.2| Mus musculus BAC clone RP23-249J17 from chromosom... 40 9.6
35gb|AC087579.17| Homo sapiens chromosome 8, clone RP11-429B7, com... 40 9.6
36gb|AC013399.6| Homo sapiens BAC clone RP11-69O6 from 2, complete... 40 9.6
37emb|BX248228.3| Zebrafish DNA sequence from clone RP71-40J23 in ... 40 9.6
38emb|AL928979.4| Zebrafish DNA sequence from clone DKEY-113G17, c... 40 9.6
39gb|AC156025.2| Mus musculus BAC clone RP23-71L21 from 14, comple... 40 9.6
40emb|BX663502.9| Zebrafish DNA sequence from clone CH211-202C21 i... 40 9.6
41emb|BX537286.4| Zebrafish DNA sequence from clone DKEY-28J4 in l... 40 9.6
42emb|CT033763.2| Medicago truncatula chromosome 5 clone mth2-139a... 40 9.6
43gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 40 9.6
44gb|AC163101.9| Mus musculus chromosome 18, clone RP24-177G6, com... 40 9.6
45gb|AC102618.19| Mus musculus chromosome 18, clone RP23-426G16, c... 40 9.6
46gb|AC004204.1|AC004204 Homo sapiens clone UWGC:y3c018 from 6p21,... 40 9.6
47gb|AC174651.2| Mus musculus BAC clone CH25-241D1 from chromosome... 40 9.6
48gb|AC126930.4| Mus musculus BAC clone RP24-547J4 from 8, complet... 40 9.6
49gb|AY495827.1| Oryctolagus cuniculus clone 179L1 kappa 1 light c... 40 9.6
50dbj|AP004480.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 9.6
51gb|AC153381.2| Mus musculus 6 BAC RP23-397L23 (Roswell Park Canc... 40 9.6
52emb|AL050148.1|HSM800448 Homo sapiens mRNA; cDNA DKFZp586G1520 (... 40 9.6 
>ref|XM_464968.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3154

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 68/78 (87%)
 Strand = Plus / Minus

                                                                        
Query: 622  atttttccttgnactgtttctccttctcttctctgaatttttcagtccatctgggtacta 681
            |||||||||||  ||||||   || ||| ||||||||||||| |||||||||||| | ||
Sbjct: 2573 atttttccttgttctgttttagctgctcctctctgaattttttagtccatctgggcatta 2514

                              
Query: 682  tgtactgctctggtattt 699
            ||||||||||||||||||
Sbjct: 2513 tgtactgctctggtattt 2496
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 68/78 (87%)
 Strand = Plus / Minus

                                                                            
Query: 622      atttttccttgnactgtttctccttctcttctctgaatttttcagtccatctgggtacta 681
                |||||||||||  ||||||   || ||| ||||||||||||| |||||||||||| | ||
Sbjct: 10695269 atttttccttgttctgttttagctgctcctctctgaattttttagtccatctgggcatta 10695210

                                  
Query: 682      tgtactgctctggtattt 699
                ||||||||||||||||||
Sbjct: 10695209 tgtactgctctggtattt 10695192



 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 281     gttcactcaaactcaaacctat 302
               ||||||||||||||||||||||
Sbjct: 1928445 gttcactcaaactcaaacctat 1928466
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>dbj|AP005533.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0018M09
          Length = 157377

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 68/78 (87%)
 Strand = Plus / Minus

                                                                          
Query: 622    atttttccttgnactgtttctccttctcttctctgaatttttcagtccatctgggtacta 681
              |||||||||||  ||||||   || ||| ||||||||||||| |||||||||||| | ||
Sbjct: 112959 atttttccttgttctgttttagctgctcctctctgaattttttagtccatctgggcatta 112900

                                
Query: 682    tgtactgctctggtattt 699
              ||||||||||||||||||
Sbjct: 112899 tgtactgctctggtattt 112882
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>dbj|AP004001.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1115_D03
          Length = 169378

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 68/78 (87%)
 Strand = Plus / Minus

                                                                         
Query: 622   atttttccttgnactgtttctccttctcttctctgaatttttcagtccatctgggtacta 681
             |||||||||||  ||||||   || ||| ||||||||||||| |||||||||||| | ||
Sbjct: 34750 atttttccttgttctgttttagctgctcctctctgaattttttagtccatctgggcatta 34691

                               
Query: 682   tgtactgctctggtattt 699
             ||||||||||||||||||
Sbjct: 34690 tgtactgctctggtattt 34673
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>dbj|AK064078.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-A08, full
            insert sequence
          Length = 3154

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 68/78 (87%)
 Strand = Plus / Minus

                                                                        
Query: 622  atttttccttgnactgtttctccttctcttctctgaatttttcagtccatctgggtacta 681
            |||||||||||  ||||||   || ||| ||||||||||||| |||||||||||| | ||
Sbjct: 2573 atttttccttgttctgttttagctgctcctctctgaattttttagtccatctgggcatta 2514

                              
Query: 682  tgtactgctctggtattt 699
            ||||||||||||||||||
Sbjct: 2513 tgtactgctctggtattt 2496
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>gb|DQ158856.1| Bigelowiella natans nucleomorph chromosome 1, partial sequence
          Length = 140590

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 449   atataattatgtgcagtattattttt 474
             ||||||||||||||| ||||||||||
Sbjct: 42169 atataattatgtgcaatattattttt 42194
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>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0081C13
          Length = 144624

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 281   gttcactcaaactcaaacctat 302
             ||||||||||||||||||||||
Sbjct: 68006 gttcactcaaactcaaacctat 68027
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>emb|AL772179.17| Mouse DNA sequence from clone RP23-100B18 on chromosome 2, complete
              sequence
          Length = 194065

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 638    tttctccttctcttctctgaattttt 663
              |||||||||||||||||| |||||||
Sbjct: 152190 tttctccttctcttctcttaattttt 152215
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>gb|AC026261.8| Homo sapiens chromosome 8, clone RP11-610E3, complete sequence
          Length = 193670

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 645   ttctcttctctgaatttttca 665
             |||||||||||||||||||||
Sbjct: 15778 ttctcttctctgaatttttca 15798
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>emb|AL359641.10| Human DNA sequence from clone RP11-402K9 on chromosome Xq21.32-22.2
           Contains a novel pseudogene and a laminin receptor 1
           (ribosomal protein SA,67kDa) (LAMR1) pseudogene,
           complete sequence
          Length = 175132

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 647 ctcttctctgaatttttcagt 667
           |||||||||||||||||||||
Sbjct: 900 ctcttctctgaatttttcagt 920
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>emb|AL136305.14| Human DNA sequence from clone RP1-259A10 on chromosome 6p22.1-23 Contains
              the gene for an ssDNA binding protein and a CpG island,
              complete sequence
          Length = 150520

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 635    ctgtttctccttctcttctct 655
              |||||||||||||||||||||
Sbjct: 106790 ctgtttctccttctcttctct 106810
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>gb|AC093302.2| Homo sapiens chromosome 5 clone RP11-60A8, complete sequence
          Length = 179385

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 69     taatctctggcattttactaa 89
              |||||||||||||||||||||
Sbjct: 115841 taatctctggcattttactaa 115861
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>dbj|AP001978.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-258O13, complete
             sequence
          Length = 161602

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 158   taaaataaacatcctaactat 178
             |||||||||||||||||||||
Sbjct: 61883 taaaataaacatcctaactat 61903
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>ref|NM_001003870.1| Danio rerio zgc:110448 (zgc:110448), mRNA
          Length = 3322

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 627  tccttgnactgtttctccttctcttct 653
            ||||||  |||||||||||||||||||
Sbjct: 2301 tccttgtcctgtttctccttctcttct 2275
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>gb|AY648792.1| Danio rerio myosin-binding subunit of myosin phosphatase mRNA,
            complete cds
          Length = 3322

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 627  tccttgnactgtttctccttctcttct 653
            ||||||  |||||||||||||||||||
Sbjct: 2301 tccttgtcctgtttctccttctcttct 2275
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>ref|NM_148955.2| Homo sapiens sorting nexin 1 (SNX1), transcript variant 2, mRNA
          Length = 8026

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 639  ttctccttctcttctctgaatttt 662
            ||||| ||||||||||||||||||
Sbjct: 6256 ttctctttctcttctctgaatttt 6233
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>ref|NM_003099.3| Homo sapiens sorting nexin 1 (SNX1), transcript variant 1, mRNA
          Length = 8221

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 639  ttctccttctcttctctgaatttt 662
            ||||| ||||||||||||||||||
Sbjct: 6451 ttctctttctcttctctgaatttt 6428
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>ref|NM_152826.2| Homo sapiens sorting nexin 1 (SNX1), transcript variant 3, mRNA
          Length = 8077

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 639  ttctccttctcttctctgaatttt 662
            ||||| ||||||||||||||||||
Sbjct: 6307 ttctctttctcttctctgaatttt 6284
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>gb|AC121965.3| Mus musculus BAC clone RP24-262G23 from chromosome 12, complete
             sequence
          Length = 170835

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 447   aaatataattatgtgcagtattat 470
             ||||||||||||||||||| ||||
Sbjct: 47514 aaatataattatgtgcagttttat 47537
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>gb|DQ249176.1| Homo sapiens isolate 218CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic
              sequence
          Length = 363675

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    ataattagctaaaataaaca 168
              ||||||||||||||||||||
Sbjct: 132885 ataattagctaaaataaaca 132904
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>gb|DQ249173.1| Homo sapiens isolate 135CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic
              sequence
          Length = 336776

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    ataattagctaaaataaaca 168
              ||||||||||||||||||||
Sbjct: 111989 ataattagctaaaataaaca 112008
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>emb|AL590668.5| Human DNA sequence from clone RP11-463L20 on chromosome 6 Contains the
             MUT gene for methylmalonyl Coenzyme A mutase snd the 5'
             end of a novel gene, complete sequence
          Length = 67410

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   tcctaactattctacttcat 188
             ||||||||||||||||||||
Sbjct: 57483 tcctaactattctacttcat 57464
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>emb|AL356141.9| Human DNA sequence from clone RP11-269L3 on chromosome 10, complete
             sequence
          Length = 87871

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 635   ctgtttctccttctcttctc 654
             ||||||||||||||||||||
Sbjct: 55471 ctgtttctccttctcttctc 55452
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>gb|AC087343.4| Homo sapiens chromosome 8, clone RP11-734J24, complete sequence
          Length = 54346

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 636   tgtttctccttctcttctct 655
             ||||||||||||||||||||
Sbjct: 18625 tgtttctccttctcttctct 18606
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>gb|AY490256.1| Desulfuromonas acetoxidans citrate synthase (gltA) gene, complete
           cds
          Length = 1314

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 367 agttcaacaaaatgacttgc 386
           ||||||||||||||||||||
Sbjct: 479 agttcaacaaaatgacttgc 498
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>gb|AC091151.11| Homo sapiens chromosome 18, clone RP11-749H17, complete sequence
          Length = 170085

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 431   cccttgtccacaacacaaat 450
             ||||||||||||||||||||
Sbjct: 61879 cccttgtccacaacacaaat 61860
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>gb|AC110054.4| Homo sapiens chromosome 15, clone CTD-2116N17, complete sequence
          Length = 164857

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 639    ttctccttctcttctctgaatttt 662
              ||||| ||||||||||||||||||
Sbjct: 157792 ttctctttctcttctctgaatttt 157815
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>gb|AC013652.8| Homo sapiens chromosome 15, clone RP11-462P6, complete sequence
          Length = 189761

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 529   attttgcaccatcgctacat 548
             ||||||||||||||||||||
Sbjct: 65211 attttgcaccatcgctacat 65192
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>gb|AC100840.2| Homo sapiens chromosome 15, clone RP11-537K8, complete sequence
          Length = 174287

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 639   ttctccttctcttctctgaatttt 662
             ||||| ||||||||||||||||||
Sbjct: 34629 ttctctttctcttctctgaatttt 34652
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>gb|AC021517.9| Homo sapiens chromosome 18, clone RP11-309E23, complete sequence
          Length = 160904

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   cccttgtccacaacacaaat 450
             ||||||||||||||||||||
Sbjct: 23386 cccttgtccacaacacaaat 23405
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>gb|AE016826.1| Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome
          Length = 615980

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    aaaataaacatcctaactat 178
              ||||||||||||||||||||
Sbjct: 102629 aaaataaacatcctaactat 102610
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>dbj|AK045230.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
            enriched library, clone:B130049L17
            product:unclassifiable, full insert sequence
          Length = 2733

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 451  ataattatgtgcagtattat 470
            ||||||||||||||||||||
Sbjct: 1929 ataattatgtgcagtattat 1948
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>gb|AC079988.6| Homo sapiens BAC clone RP11-795C1 from 2, complete sequence
          Length = 211305

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 571    ttttagtcataaaatttgtg 590
              ||||||||||||||||||||
Sbjct: 116279 ttttagtcataaaatttgtg 116298
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>gb|AC154592.2| Mus musculus BAC clone RP23-249J17 from chromosome 14, complete
             sequence
          Length = 211647

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 636   tgtttctccttctcttctct 655
             ||||||||||||||||||||
Sbjct: 66191 tgtttctccttctcttctct 66172
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>gb|AC087579.17| Homo sapiens chromosome 8, clone RP11-429B7, complete sequence
          Length = 122553

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   tcctgattcccacaccaaag 258
             ||||||||||||||||||||
Sbjct: 90527 tcctgattcccacaccaaag 90546
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>gb|AC013399.6| Homo sapiens BAC clone RP11-69O6 from 2, complete sequence
          Length = 171812

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 571   ttttagtcataaaatttgtg 590
             ||||||||||||||||||||
Sbjct: 15322 ttttagtcataaaatttgtg 15341
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>emb|BX248228.3| Zebrafish DNA sequence from clone RP71-40J23 in linkage group 23,
             complete sequence
          Length = 141134

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   ctgctgctggacatcctgat 245
             ||||||||||||||||||||
Sbjct: 61965 ctgctgctggacatcctgat 61984
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>emb|AL928979.4| Zebrafish DNA sequence from clone DKEY-113G17, complete sequence
          Length = 193205

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 457   atgtgcagtattatttttgt 476
             ||||||||||||||||||||
Sbjct: 57711 atgtgcagtattatttttgt 57692
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>gb|AC156025.2| Mus musculus BAC clone RP23-71L21 from 14, complete sequence
          Length = 215610

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 636  tgtttctccttctcttctct 655
            ||||||||||||||||||||
Sbjct: 4394 tgtttctccttctcttctct 4413
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>emb|BX663502.9| Zebrafish DNA sequence from clone CH211-202C21 in linkage group 18,
             complete sequence
          Length = 188674

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 457   atgtgcagtattatttttgt 476
             ||||||||||||||||||||
Sbjct: 34004 atgtgcagtattatttttgt 33985
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>emb|BX537286.4| Zebrafish DNA sequence from clone DKEY-28J4 in linkage group 4, complete
              sequence
          Length = 179930

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 627    tccttgnactgtttctccttctcttct 653
              ||||||  |||||||||||||||||||
Sbjct: 113106 tccttgtcctgtttctccttctcttct 113080
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>emb|CT033763.2| Medicago truncatula chromosome 5 clone mth2-139a2, COMPLETE SEQUENCE
          Length = 132108

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 441   caacacaaatataattatgt 460
             ||||||||||||||||||||
Sbjct: 17170 caacacaaatataattatgt 17151
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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 224     tcctgctgctggacatcctg 243
               ||||||||||||||||||||
Sbjct: 1216564 tcctgctgctggacatcctg 1216545
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>gb|AC163101.9| Mus musculus chromosome 18, clone RP24-177G6, complete sequence
          Length = 154555

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 451    ataattatgtgcagtattat 470
              ||||||||||||||||||||
Sbjct: 130470 ataattatgtgcagtattat 130489
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>gb|AC102618.19| Mus musculus chromosome 18, clone RP23-426G16, complete sequence
          Length = 242449

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 451   ataattatgtgcagtattat 470
             ||||||||||||||||||||
Sbjct: 72928 ataattatgtgcagtattat 72947
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>gb|AC004204.1|AC004204 Homo sapiens clone UWGC:y3c018 from 6p21, complete sequence
          Length = 46797

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   ataattagctaaaataaaca 168
             ||||||||||||||||||||
Sbjct: 42455 ataattagctaaaataaaca 42474
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>gb|AC174651.2| Mus musculus BAC clone CH25-241D1 from chromosome 6, complete sequence
          Length = 120448

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 447   aaatataattatgtgcagta 466
             ||||||||||||||||||||
Sbjct: 36335 aaatataattatgtgcagta 36354
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>gb|AC126930.4| Mus musculus BAC clone RP24-547J4 from 8, complete sequence
          Length = 191241

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   ctgattcccacaccaaagac 260
             ||||||||||||||||||||
Sbjct: 89700 ctgattcccacaccaaagac 89681
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>gb|AY495827.1| Oryctolagus cuniculus clone 179L1 kappa 1 light chain immunglobulin
             gene region
          Length = 205144

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   attagctaaaataaacatcc 171
             ||||||||||||||||||||
Sbjct: 16205 attagctaaaataaacatcc 16186
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>dbj|AP004480.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT03H13, TM0012c,
            complete sequence
          Length = 11644

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 255  aaagacactccggtgttcaa 274
            ||||||||||||||||||||
Sbjct: 1067 aaagacactccggtgttcaa 1048
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>gb|AC153381.2| Mus musculus 6 BAC RP23-397L23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 196902

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 447    aaatataattatgtgcagta 466
              ||||||||||||||||||||
Sbjct: 166917 aaatataattatgtgcagta 166898
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>emb|AL050148.1|HSM800448 Homo sapiens mRNA; cDNA DKFZp586G1520 (from clone DKFZp586G1520)
          Length = 3030

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 639  ttctccttctcttctctgaatttt 662
            ||||| ||||||||||||||||||
Sbjct: 1250 ttctctttctcttctctgaatttt 1227


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,543,858
Number of Sequences: 3902068
Number of extensions: 7543858
Number of successful extensions: 145279
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145059
Number of HSP's gapped (non-prelim): 220
length of query: 703
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 680
effective length of database: 17,143,297,704
effective search space: 11657442438720
effective search space used: 11657442438720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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