ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19a19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U49482.1|HVU49482 Hordeum vulgare low temperature-responsive ... 410 e-111
2dbj|AB207971.1| Lolium perenne gene for glycine-rich RNA-binding... 46 0.063
3gb|AC146718.2| Oryza sativa chromosome 3 B1130H05 genomic seque... 42 0.98
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 0.98
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.98
6dbj|AK119242.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.98
7dbj|AK119238.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.98
8dbj|AK070016.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.98
9dbj|AK059164.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.98
10gb|AF010579.1|AF010579 Oryza sativa glycine-rich protein (OSGRP1... 42 0.98
11ref|XM_476889.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.9
12gb|AC122900.3| Mus musculus BAC clone RP23-39N24 from 15, comple... 40 3.9
13emb|Y15252.1|PSNARXL Pseudomonas aeruginosa narX, narL, narK1, n... 40 3.9
14dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
15gb|AE004805.1| Pseudomonas aeruginosa PAO1, section 366 of 529 o... 40 3.9
16dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
17dbj|AP003835.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
18gb|U72744.1|MFU72744 Mycobacterium fortuitum nitrite extrusion p... 40 3.9 
>gb|U49482.1|HVU49482 Hordeum vulgare low temperature-responsive RNA-binding protein
           (blt801) mRNA, complete cds
          Length = 806

 Score =  410 bits (207), Expect = e-111
 Identities = 222/226 (98%), Gaps = 2/226 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   gcgaacggaacaggggaacggtaacaagtagcacggaacggtagcgtcacatctaacggt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gcgaacggaacaggggaacggtaacaagtagcacggaacggtagcgtcacatctaacggt 691

                                                                       
Query: 63  agccagagcatctcagaacctaagcgatggagcgagatctagggttactcgggagcgagc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 agccagagcatctcagaacctaagcgatggagcgagatctagggttactcgggagcgagc 631

                                                                       
Query: 123 gataacacggt--acaggtaaacgaaaaggatggatcgataactaggataactggccgac 180
           |||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 630 gataacacggtagacaggtaaacgaaaaggatagatcgataactaggataactggccgac 571

                                                         
Query: 181 aaggggccccaccattcactccctccagttgccgccgccgaagccg 226
           |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 570 aaggggccccaccattcactccctccagttgccgccgccggagccg 525
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>dbj|AB207971.1| Lolium perenne gene for glycine-rich RNA-binding protein, complete
            cds
          Length = 2129

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 51/59 (86%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                       
Query: 158  gataactaggataactggccgacaaggggccccaccattcactccctccagttgccgcc 216
            |||| ||||||||||||||| ||  | |||||||||| ||| | |||||||||||||||
Sbjct: 1813 gatagctaggataactggcc-actcgtggccccaccaatcagttcctccagttgccgcc 1756



 Score = 42.1 bits (21), Expect = 0.98
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 81   cctaagcgatggagcgagatctagg 105
            ||||||||||||||||||| |||||
Sbjct: 1884 cctaagcgatggagcgagacctagg 1860
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>gb|AC146718.2| Oryza sativa chromosome 3  B1130H05 genomic sequence, complete sequence
          Length = 49565

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 46/53 (86%), Gaps = 1/53 (1%)
 Strand = Plus / Plus

                                                                  
Query: 165   aggataactggccgacaaggggccccaccattcactccctccagttgccgccg 217
             ||||||||||||| || | ||||||||||| ||| | ||||||||| ||||||
Sbjct: 16211 aggataactggcc-acgatgggccccaccaatcagttcctccagttcccgccg 16262
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 46/53 (86%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                     
Query: 165      aggataactggccgacaaggggccccaccattcactccctccagttgccgccg 217
                ||||||||||||| || | ||||||||||| ||| | ||||||||| ||||||
Sbjct: 26169615 aggataactggcc-acgatgggccccaccaatcagttcctccagttcccgccg 26169564
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 46/53 (86%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                     
Query: 165      aggataactggccgacaaggggccccaccattcactccctccagttgccgccg 217
                ||||||||||||| || | ||||||||||| ||| | ||||||||| ||||||
Sbjct: 26260924 aggataactggcc-acgatgggccccaccaatcagttcctccagttcccgccg 26260873
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>dbj|AK119242.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-B02, full
           insert sequence
          Length = 704

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 46/53 (86%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 165 aggataactggccgacaaggggccccaccattcactccctccagttgccgccg 217
           ||||||||||||| || | ||||||||||| ||| | ||||||||| ||||||
Sbjct: 482 aggataactggcc-acgatgggccccaccaatcagttcctccagttcccgccg 431
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>dbj|AK119238.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-H08, full
           insert sequence
          Length = 746

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 46/53 (86%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 165 aggataactggccgacaaggggccccaccattcactccctccagttgccgccg 217
           ||||||||||||| || | ||||||||||| ||| | ||||||||| ||||||
Sbjct: 539 aggataactggcc-acgatgggccccaccaatcagttcctccagttcccgccg 488
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>dbj|AK070016.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037K17, full
           insert sequence
          Length = 854

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 46/53 (86%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 165 aggataactggccgacaaggggccccaccattcactccctccagttgccgccg 217
           ||||||||||||| || | ||||||||||| ||| | ||||||||| ||||||
Sbjct: 618 aggataactggcc-acgatgggccccaccaatcagttcctccagttcccgccg 567
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>dbj|AK059164.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-D11, full
           insert sequence
          Length = 779

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 46/53 (86%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 165 aggataactggccgacaaggggccccaccattcactccctccagttgccgccg 217
           ||||||||||||| || | ||||||||||| ||| | ||||||||| ||||||
Sbjct: 557 aggataactggcc-acgatgggccccaccaatcagttcctccagttcccgccg 506
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>gb|AF010579.1|AF010579 Oryza sativa glycine-rich protein (OSGRP1) mRNA, complete cds
          Length = 713

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 46/53 (86%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 165 aggataactggccgacaaggggccccaccattcactccctccagttgccgccg 217
           ||||||||||||| || | ||||||||||| ||| | ||||||||| ||||||
Sbjct: 527 aggataactggcc-acgatgggccccaccaatcagttcctccagttcccgccg 476
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>ref|XM_476889.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 411

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 208 gttgccgccgccgaagccga 227
           ||||||||||||||||||||
Sbjct: 314 gttgccgccgccgaagccga 333
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>gb|AC122900.3| Mus musculus BAC clone RP23-39N24 from 15, complete sequence
          Length = 203855

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   cccaccattcactccctcca 207
             ||||||||||||||||||||
Sbjct: 86463 cccaccattcactccctcca 86482
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>emb|Y15252.1|PSNARXL Pseudomonas aeruginosa narX, narL, narK1, narK2, narG, narH, narJ,
            narI, nifM, moaA genes
          Length = 15168

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 207  agttgccgccgccgaagccg 226
            ||||||||||||||||||||
Sbjct: 5879 agttgccgccgccgaagccg 5860
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 208     gttgccgccgccgaagccga 227
               ||||||||||||||||||||
Sbjct: 4452426 gttgccgccgccgaagccga 4452445
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>gb|AE004805.1| Pseudomonas aeruginosa PAO1, section 366 of 529 of the complete
            genome
          Length = 10637

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 207  agttgccgccgccgaagccg 226
            ||||||||||||||||||||
Sbjct: 1031 agttgccgccgccgaagccg 1050
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>dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1046_F10
          Length = 118472

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   gttgccgccgccgaagccga 227
             ||||||||||||||||||||
Sbjct: 31145 gttgccgccgccgaagccga 31164
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>dbj|AP003835.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1506_G02
          Length = 106742

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   gttgccgccgccgaagccga 227
             ||||||||||||||||||||
Sbjct: 92275 gttgccgccgccgaagccga 92294
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>gb|U72744.1|MFU72744 Mycobacterium fortuitum nitrite extrusion protein gene, complete
           cds
          Length = 1857

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 agttgccgccgccgaagccg 226
           ||||||||||||||||||||
Sbjct: 437 agttgccgccgccgaagccg 418


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,080,709
Number of Sequences: 3902068
Number of extensions: 2080709
Number of successful extensions: 33297
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 33222
Number of HSP's gapped (non-prelim): 81
length of query: 295
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 273
effective length of database: 17,147,199,772
effective search space: 4681185537756
effective search space used: 4681185537756
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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