ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19a18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ACHA4_PANTR (Q5IS77) Neuronal acetylcholine receptor protein, al... 34 0.48
2ACHA4_HUMAN (P43681) Neuronal acetylcholine receptor protein, al... 33 0.63
3COAA_CORGL (Q8NRQ2) Pantothenate kinase (EC 2.7.1.33) (Pantothen... 30 6.9

>ACHA4_PANTR (Q5IS77) Neuronal acetylcholine receptor protein, alpha-4 subunit|
           precursor
          Length = 627

 Score = 33.9 bits (76), Expect = 0.48
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 215 PLTSKKQHDTWARGPTTPPHSSQLPSSETAVAIRLQEFEAPVQNAKGG 358
           PL ++K     + GP  PPH +Q P    A ++ +Q   +P +  +GG
Sbjct: 434 PLEAEKASPHASPGPCRPPHGTQAPGLAKARSLSVQHMSSPGEAVEGG 481



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>ACHA4_HUMAN (P43681) Neuronal acetylcholine receptor protein, alpha-4 subunit|
           precursor
          Length = 627

 Score = 33.5 bits (75), Expect = 0.63
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 215 PLTSKKQHDTWARGPTTPPHSSQLPSSETAVAIRLQEFEAPVQNAKGG 358
           PL ++K     + GP  PPH +Q P    A ++ +Q   +P +  +GG
Sbjct: 434 PLEAEKASPHPSPGPCRPPHGTQAPGLAKARSLSVQHMSSPGEAVEGG 481



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>COAA_CORGL (Q8NRQ2) Pantothenate kinase (EC 2.7.1.33) (Pantothenic acid|
           kinase)
          Length = 312

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
 Frame = -1

Query: 305 QLFHLRVIGSYV---EAWWVHVPMCRVVSWRLEAQYYLVRALIPLFGFTSLVMLAYII-- 141
           ++  LR IG  +   E   V++P+ R++  ++ A+  L  A     G +  + + ++I  
Sbjct: 36  EVIELRGIGENIDLAEVAEVYLPLSRLIHLQVAARQQLTAATETFLGTSPSISVPFVIGV 95

Query: 140 ----FFGKSTTRGTYSILLSFDKKFPRVAYNDLALATG-KFSELNLVGRG 6
                 GKSTT     +LL      PRV   DL    G  +    L+ RG
Sbjct: 96  AGSVAVGKSTTARLLQVLLQRWNSHPRV---DLVTTDGFLYPGAELIRRG 142


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,824,527
Number of Sequences: 219361
Number of extensions: 1864100
Number of successful extensions: 4436
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4436
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6856295237
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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