Clone Information

BLAST Search Result

Clone Name	rbasd18l16
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_194762.1\| Oryza sativa (japonica cultivar-group) putative...	246	8e-62
2	dbj\|AK068217.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	246	8e-62
3	gb\|AC079843.3\| Oryza sativa (japonica cultivar-group) chromosome...	123	8e-25
4	gb\|AC145127.1\| Oryza sativa (japonica cultivar-group) chromosome...	123	8e-25
5	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	123	8e-25
6	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	123	8e-25
7	dbj\|AK071529.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	111	3e-21
8	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	52	0.002
9	gb\|AC136136.1\| Genomic sequence for Oryza sativa, Nipponbare str...	52	0.002
10	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
11	gb\|AC134239.2\| Oryza sativa (japonica cultivar-group) chromosome...	52	0.002
12	ref\|NM_135328.1\| Drosophila melanogaster CG7219-RA (CG7219), mRNA	44	0.58
13	gb\|AC007416.12\|AC007416 Drosophila melanogaster, chromosome 2L, ...	44	0.58
14	emb\|BX470117.7\| Zebrafish DNA sequence from clone CH211-204N10 i...	44	0.58
15	gb\|AE003619.3\| Drosophila melanogaster chromosome 2L, section 28...	44	0.58
16	dbj\|AK115927.1\| Ciona intestinalis cDNA, clone:cilv041i10, full ...	44	0.58
17	emb\|AL691422.15\| Mouse DNA sequence from clone RP23-85B20 on chr...	44	0.58
18	emb\|BX842608.1\|OSJN00298 Oryza sativa genomic DNA, chromosome 4,...	42	2.3
19	gb\|AC122153.4\| Oryctolagus cuniculus clone LB1-9L8, complete seq...	42	2.3
20	emb\|AL662964.3\|OSJN00161 Oryza sativa genomic DNA, chromosome 4,...	42	2.3
21	gb\|AC015804.14\| Homo sapiens chromosome 17, clone RP11-637C24, c...	42	2.3
22	gb\|DP000006.1\| Oryctolagus cuniculus target 1 genomic scaffold	42	2.3
23	gb\|AC069476.25\| Homo sapiens chromosome 11 clone b430h11 map 11,...	42	2.3
24	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.3
25	gb\|AC012333.9\| Homo sapiens chromosome 17, clone RP11-881D9, com...	42	2.3
26	dbj\|AP003174.2\| Homo sapiens genomic DNA, chromosome 11q, clone:...	42	2.3
27	emb\|AL672254.9\| Mouse DNA sequence from clone RP23-409H23 on chr...	42	2.3
28	gb\|AC123609.11\| Mus musculus chromosome 3, clone RP23-281B17, co...	40	9.1
29	ref\|XM_473471.1\| Oryza sativa (japonica cultivar-group), predic...	40	9.1
30	gb\|AC145364.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.1
31	ref\|XM_709168.1\| Candida albicans SC5314 hypothetical protein (C...	40	9.1
32	ref\|XM_709030.1\| Candida albicans SC5314 hypothetical protein (C...	40	9.1
33	emb\|BX936443.15\| Zebrafish DNA sequence from clone CH211-202H12 ...	40	9.1
34	gb\|AC140404.3\| Mus musculus BAC clone RP23-146B9 from chromosome...	40	9.1
35	emb\|AL713851.8\| Human DNA sequence from clone RP11-526P5 on chro...	40	9.1
36	emb\|AL357275.14\| Human DNA sequence from clone RP11-534J23 on ch...	40	9.1
37	emb\|AL353596.13\| Human DNA sequence from clone CTA-212D2 on chro...	40	9.1
38	gb\|AC026672.44\| Homo sapiens 12 BAC RP11-876K22 (Roswell Park Ca...	40	9.1
39	emb\|AL606682.3\|OSJN00085 Oryza sativa genomic DNA, chromosome 4,...	40	9.1
40	gb\|AC022017.8\| Homo sapiens chromosome 10 clone RP11-210G22, com...	40	9.1
41	gb\|AC106791.4\| Homo sapiens chromosome 5 clone RP11-381K20, comp...	40	9.1
42	gb\|AC021760.9\| Homo sapiens chromosome 8, clone RP11-433L7, comp...	40	9.1
43	ref\|XM_679631.1\| PREDICTED: Danio rerio similar to Ubiquinone bi...	40	9.1
44	gb\|AC006084.1\|AC006084 Homo sapiens chromosome 5, Pac clone 9c13...	40	9.1
45	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1
46	gb\|CP000252.1\| Syntrophus aciditrophicus SB, complete genome	40	9.1
47	emb\|AL669967.12\| Mouse DNA sequence from clone RP23-216M21 on ch...	40	9.1
48	gb\|AC009716.22\| Homo sapiens chromosome 18, clone RP11-504I13, c...	40	9.1
49	gb\|AC104483.2\| Sus scrofa clone RP44-427G13, complete sequence	40	9.1
50	gb\|AC004820.2\|AC004820 Homo sapiens clone DJ0038I10, complete se...	40	9.1
51	gb\|AC151487.3\| Aotus nancymaae clone CH258-321B24, complete sequ...	40	9.1
52	dbj\|AP000639.4\| Homo sapiens genomic DNA, chromosome 11q, clone:...	40	9.1
53	gb\|U39860.1\|OSU39860 Oryza sativa transcriptional activator (Ra)...	40	9.1
54	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.1
55	gb\|U22657.1\|MMU22657 Mus musculus genomic locus related to cellu...	40	9.1
56	gb\|AC018413.10\| Homo sapiens chromosome 18, clone RP11-17M16, co...	40	9.1
57	dbj\|AB021079.1\| Oryza sativa Plw-OSB1 mRNA for R-type basic heli...	40	9.1

>ref|NM_194762.1| Oryza sativa (japonica cultivar-group) putative GTP-BINDING PROTEIN
           YPTV3 (OSJNBa0013J21.21), mRNA
          Length = 1065

 Score =  246 bits (124), Expect = 8e-62
 Identities = 205/232 (88%)
 Strand = Plus / Minus

                                                                       
Query: 434 tatttgtacctctgcccgccatagcttttccttttgaacaactcttcgtcattcgtggtt 493
           |||||||| ||||| ||  | |||||||||||||  ||||  || || |||||||| |||
Sbjct: 893 tatttgtaactctggccagcgtagcttttcctttgaaacaggtcatcatcattcgttgtt 834

                                                                       
Query: 494 tctacaggaagaatggtatcccctctgggagtgagagaccatgggctaggggcaggaagt 553
           ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||| 
Sbjct: 833 tctacaggaagaatggtatcctctctgggagtgagggaccatgggctaggagcaggaagc 774

                                                                       
Query: 554 tcattcgagaaatacctcctccttatcaacatgcggaagaacttaaccacagcttcttta 613
           || || || ||||| || ||||||||||||||||||||||||||||||| ||||||||| 
Sbjct: 773 tcgtttgaaaaatatcttctccttatcaacatgcggaagaacttaaccaaagcttctttg 714

                                                               
Query: 614 tcatatctagcctcttttgcagccgtgagcagaccagaattgccagggaagc 665
           |||||||| ||| |||| ||||||||||||| ||||||||||||||||||||
Sbjct: 713 tcatatcttgccactttagcagccgtgagcaaaccagaattgccagggaagc 662



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                         
Query: 304  gtcaggaattgctgatgacgagaatctgtggtatctgtagttctc 348
            |||||||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 1023 gtcaggaattgccgatgaggagaacctgtgatatctgtagttctc 979

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>dbj|AK068217.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013136D19, full
            insert sequence
          Length = 1541

 Score =  246 bits (124), Expect = 8e-62
 Identities = 205/232 (88%)
 Strand = Plus / Minus

                                                                        
Query: 434  tatttgtacctctgcccgccatagcttttccttttgaacaactcttcgtcattcgtggtt 493
            |||||||| ||||| ||  | |||||||||||||  ||||  || || |||||||| |||
Sbjct: 1080 tatttgtaactctggccagcgtagcttttcctttgaaacaggtcatcatcattcgttgtt 1021

                                                                        
Query: 494  tctacaggaagaatggtatcccctctgggagtgagagaccatgggctaggggcaggaagt 553
            ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||| 
Sbjct: 1020 tctacaggaagaatggtatcctctctgggagtgagggaccatgggctaggagcaggaagc 961

                                                                        
Query: 554  tcattcgagaaatacctcctccttatcaacatgcggaagaacttaaccacagcttcttta 613
            || || || ||||| || ||||||||||||||||||||||||||||||| ||||||||| 
Sbjct: 960  tcgtttgaaaaatatcttctccttatcaacatgcggaagaacttaaccaaagcttctttg 901

                                                                
Query: 614  tcatatctagcctcttttgcagccgtgagcagaccagaattgccagggaagc 665
            |||||||| ||| |||| ||||||||||||| ||||||||||||||||||||
Sbjct: 900  tcatatcttgccactttagcagccgtgagcaaaccagaattgccagggaagc 849



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                         
Query: 304  gtcaggaattgctgatgacgagaatctgtggtatctgtagttctc 348
            |||||||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 1210 gtcaggaattgccgatgaggagaacctgtgatatctgtagttctc 1166

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>gb|AC079843.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0013J21,
              complete sequence
          Length = 155290

 Score =  123 bits (62), Expect = 8e-25
 Identities = 92/102 (90%)
 Strand = Plus / Plus

                                                                          
Query: 482    tcattcgtggtttctacaggaagaatggtatcccctctgggagtgagagaccatgggcta 541
              |||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 136681 tcattcgttgtttctacaggaagaatggtatcctctctgggagtgagggaccatgggcta 136740

                                                        
Query: 542    ggggcaggaagttcattcgagaaatacctcctccttatcaac 583
              || |||||||| || || || ||||| || ||||||||||||
Sbjct: 136741 ggagcaggaagctcgtttgaaaaatatcttctccttatcaac 136782



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                     
Query: 583    catgcggaagaacttaaccacagcttctttatcatatctagcctcttttgcagcc 637
              |||||||||||||||||||| ||||||||| |||||||| ||| |||| ||||||
Sbjct: 136876 catgcggaagaacttaaccaaagcttctttgtcatatcttgccactttagcagcc 136930



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                           
Query: 304    gtcaggaattgctgatgacgagaatctgtggtatctgtagttctc 348
              |||||||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 136321 gtcaggaattgccgatgaggagaacctgtgatatctgtagttctc 136365



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                            
Query: 636    ccgtgagcagaccagaattgccagggaagc 665
              ||||||||| ||||||||||||||||||||
Sbjct: 137177 ccgtgagcaaaccagaattgccagggaagc 137206

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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score =  123 bits (62), Expect = 8e-25
 Identities = 92/102 (90%)
 Strand = Plus / Plus

                                                                           
Query: 482     tcattcgtggtttctacaggaagaatggtatcccctctgggagtgagagaccatgggcta 541
               |||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 2158541 tcattcgttgtttctacaggaagaatggtatcctctctgggagtgagggaccatgggcta 2158600

                                                         
Query: 542     ggggcaggaagttcattcgagaaatacctcctccttatcaac 583
               || |||||||| || || || ||||| || ||||||||||||
Sbjct: 2158601 ggagcaggaagctcgtttgaaaaatatcttctccttatcaac 2158642



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                      
Query: 583     catgcggaagaacttaaccacagcttctttatcatatctagcctcttttgcagcc 637
               |||||||||||||||||||| ||||||||| |||||||| ||| |||| ||||||
Sbjct: 2158736 catgcggaagaacttaaccaaagcttctttgtcatatcttgccactttagcagcc 2158790



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                            
Query: 304     gtcaggaattgctgatgacgagaatctgtggtatctgtagttctc 348
               |||||||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 2158181 gtcaggaattgccgatgaggagaacctgtgatatctgtagttctc 2158225



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                             
Query: 636     ccgtgagcagaccagaattgccagggaagc 665
               ||||||||| ||||||||||||||||||||
Sbjct: 2159037 ccgtgagcaaaccagaattgccagggaagc 2159066

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score =  123 bits (62), Expect = 8e-25
 Identities = 92/102 (90%)
 Strand = Plus / Plus

                                                                           
Query: 482     tcattcgtggtttctacaggaagaatggtatcccctctgggagtgagagaccatgggcta 541
               |||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 2158541 tcattcgttgtttctacaggaagaatggtatcctctctgggagtgagggaccatgggcta 2158600

                                                         
Query: 542     ggggcaggaagttcattcgagaaatacctcctccttatcaac 583
               || |||||||| || || || ||||| || ||||||||||||
Sbjct: 2158601 ggagcaggaagctcgtttgaaaaatatcttctccttatcaac 2158642



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                      
Query: 583     catgcggaagaacttaaccacagcttctttatcatatctagcctcttttgcagcc 637
               |||||||||||||||||||| ||||||||| |||||||| ||| |||| ||||||
Sbjct: 2158736 catgcggaagaacttaaccaaagcttctttgtcatatcttgccactttagcagcc 2158790



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                            
Query: 304     gtcaggaattgctgatgacgagaatctgtggtatctgtagttctc 348
               |||||||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 2158181 gtcaggaattgccgatgaggagaacctgtgatatctgtagttctc 2158225



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                             
Query: 636     ccgtgagcagaccagaattgccagggaagc 665
               ||||||||| ||||||||||||||||||||
Sbjct: 2159037 ccgtgagcaaaccagaattgccagggaagc 2159066

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  123 bits (62), Expect = 8e-25
 Identities = 92/102 (90%)
 Strand = Plus / Plus

                                                                           
Query: 482     tcattcgtggtttctacaggaagaatggtatcccctctgggagtgagagaccatgggcta 541
               |||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 2158492 tcattcgttgtttctacaggaagaatggtatcctctctgggagtgagggaccatgggcta 2158551

                                                         
Query: 542     ggggcaggaagttcattcgagaaatacctcctccttatcaac 583
               || |||||||| || || || ||||| || ||||||||||||
Sbjct: 2158552 ggagcaggaagctcgtttgaaaaatatcttctccttatcaac 2158593



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                      
Query: 583     catgcggaagaacttaaccacagcttctttatcatatctagcctcttttgcagcc 637
               |||||||||||||||||||| ||||||||| |||||||| ||| |||| ||||||
Sbjct: 2158687 catgcggaagaacttaaccaaagcttctttgtcatatcttgccactttagcagcc 2158741



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                            
Query: 304     gtcaggaattgctgatgacgagaatctgtggtatctgtagttctc 348
               |||||||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 2158132 gtcaggaattgccgatgaggagaacctgtgatatctgtagttctc 2158176



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                             
Query: 636     ccgtgagcagaccagaattgccagggaagc 665
               ||||||||| ||||||||||||||||||||
Sbjct: 2158988 ccgtgagcaaaccagaattgccagggaagc 2159017

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>dbj|AK071529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104E16, full
           insert sequence
          Length = 1438

 Score =  111 bits (56), Expect = 3e-21
 Identities = 143/172 (83%)
 Strand = Plus / Minus

                                                                       
Query: 494 tctacaggaagaatggtatcccctctgggagtgagagaccatgggctaggggcaggaagt 553
           ||||||||||| ||| ||||  |||| |||||||||||||| || || ||||||| | | 
Sbjct: 959 tctacaggaaggatgctatcttctctcggagtgagagaccagggactcggggcagcaggc 900

                                                                       
Query: 554 tcattcgagaaatacctcctccttatcaacatgcggaagaacttaaccacagcttcttta 613
           ||||| |||||| | || ||||| |||||||||||||| ||||| | ||| |||||||| 
Sbjct: 899 tcatttgagaaaaatcttctcctaatcaacatgcggaaaaacttgatcacggcttctttg 840

                                                               
Query: 614 tcatatctagcctcttttgcagccgtgagcagaccagaattgccagggaagc 665
           |||||||| || ||||| ||||||| ||| |||||||| || ||||| ||||
Sbjct: 839 tcatatcttgcttctttggcagccgagaggagaccagagttcccaggaaagc 788

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                           
Query: 494     tctacaggaagaatggtatcccctctgggagtgagagaccatgggctaggggcaggaagt 553
               ||||||||||| ||| ||||  |||| |||||||||||||| || || ||||||| | | 
Sbjct: 7486506 tctacaggaaggatgctatcttctctcggagtgagagaccagggactcggggcagcaggc 7486447

                                             
Query: 554     tcattcgagaaatacctcctccttatcaac 583
               ||||| |||||| | || ||||| ||||||
Sbjct: 7486446 tcatttgagaaaaatcttctcctaatcaac 7486417

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>gb|AC136136.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0071C04, from chromosome 3, complete sequence
          Length = 126078

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                          
Query: 494    tctacaggaagaatggtatcccctctgggagtgagagaccatgggctaggggcaggaagt 553
              ||||||||||| ||| ||||  |||| |||||||||||||| || || ||||||| | | 
Sbjct: 125061 tctacaggaaggatgctatcttctctcggagtgagagaccagggactcggggcagcaggc 125002

                                            
Query: 554    tcattcgagaaatacctcctccttatcaac 583
              ||||| |||||| | || ||||| ||||||
Sbjct: 125001 tcatttgagaaaaatcttctcctaatcaac 124972

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                           
Query: 494     tctacaggaagaatggtatcccctctgggagtgagagaccatgggctaggggcaggaagt 553
               ||||||||||| ||| ||||  |||| |||||||||||||| || || ||||||| | | 
Sbjct: 7484341 tctacaggaaggatgctatcttctctcggagtgagagaccagggactcggggcagcaggc 7484282

                                             
Query: 554     tcattcgagaaatacctcctccttatcaac 583
               ||||| |||||| | || ||||| ||||||
Sbjct: 7484281 tcatttgagaaaaatcttctcctaatcaac 7484252

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>gb|AC134239.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0042A11, complete sequence
          Length = 113049

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                         
Query: 494   tctacaggaagaatggtatcccctctgggagtgagagaccatgggctaggggcaggaagt 553
             ||||||||||| ||| ||||  |||| |||||||||||||| || || ||||||| | | 
Sbjct: 15402 tctacaggaaggatgctatcttctctcggagtgagagaccagggactcggggcagcaggc 15343

                                           
Query: 554   tcattcgagaaatacctcctccttatcaac 583
             ||||| |||||| | || ||||| ||||||
Sbjct: 15342 tcatttgagaaaaatcttctcctaatcaac 15313

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>ref|NM_135328.1| Drosophila melanogaster CG7219-RA (CG7219), mRNA
          Length = 1611

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 345  tctccgcggaagaggacatcgg 366
            ||||||||||||||||||||||
Sbjct: 1523 tctccgcggaagaggacatcgg 1502

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>gb|AC007416.12|AC007416 Drosophila melanogaster, chromosome 2L, region 28B-28B, BAC clone
             BACR08I01, complete sequence
          Length = 169427

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 345   tctccgcggaagaggacatcgg 366
             ||||||||||||||||||||||
Sbjct: 57379 tctccgcggaagaggacatcgg 57400

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>emb|BX470117.7| Zebrafish DNA sequence from clone CH211-204N10 in linkage group 19,
             complete sequence
          Length = 169993

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 77    atgaaagacaaaataaacaaaa 98
             ||||||||||||||||||||||
Sbjct: 44892 atgaaagacaaaataaacaaaa 44913

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>gb|AE003619.3| Drosophila melanogaster chromosome 2L, section 28 of 83 of the complete
              sequence
          Length = 289516

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 345    tctccgcggaagaggacatcgg 366
              ||||||||||||||||||||||
Sbjct: 183610 tctccgcggaagaggacatcgg 183631

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>dbj|AK115927.1| Ciona intestinalis cDNA, clone:cilv041i10, full insert sequence
          Length = 1621

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 80   aaagacaaaataaacaaaaaga 101
            ||||||||||||||||||||||
Sbjct: 1588 aaagacaaaataaacaaaaaga 1609

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>emb|AL691422.15| Mouse DNA sequence from clone RP23-85B20 on chromosome X, complete
              sequence
          Length = 164287

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 78     tgaaagacaaaataaacaaaaa 99
              ||||||||||||||||||||||
Sbjct: 120220 tgaaagacaaaataaacaaaaa 120199

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>emb|BX842608.1|OSJN00298 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1340F09, complete
              sequence
          Length = 149449

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 79     gaaagacaaaataaacaaaaa 99
              |||||||||||||||||||||
Sbjct: 123677 gaaagacaaaataaacaaaaa 123697

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>gb|AC122153.4| Oryctolagus cuniculus clone LB1-9L8, complete sequence
          Length = 216345

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 45    atatgaaagaaatgctaacta 65
             |||||||||||||||||||||
Sbjct: 58986 atatgaaagaaatgctaacta 58966

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>emb|AL662964.3|OSJN00161 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H09,
             complete sequence
          Length = 155672

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 79    gaaagacaaaataaacaaaaa 99
             |||||||||||||||||||||
Sbjct: 75992 gaaagacaaaataaacaaaaa 76012

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>gb|AC015804.14| Homo sapiens chromosome 17, clone RP11-637C24, complete sequence
          Length = 200452

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 641   agcagaccagaattgccagggaagc 665
             |||||||||||| ||||||||||||
Sbjct: 12658 agcagaccagaagtgccagggaagc 12682

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>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 45     atatgaaagaaatgctaacta 65
              |||||||||||||||||||||
Sbjct: 300002 atatgaaagaaatgctaacta 299982

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>gb|AC069476.25| Homo sapiens chromosome 11 clone b430h11 map 11, complete sequence
          Length = 184824

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 79    gaaagacaaaataaacaaaaa 99
             |||||||||||||||||||||
Sbjct: 92555 gaaagacaaaataaacaaaaa 92575

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 79      gaaagacaaaataaacaaaaa 99
               |||||||||||||||||||||
Sbjct: 1780725 gaaagacaaaataaacaaaaa 1780745



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 307      aggaattgctgatgacgaga 326
                ||||||||||||||||||||
Sbjct: 27923256 aggaattgctgatgacgaga 27923237

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>gb|AC012333.9| Homo sapiens chromosome 17, clone RP11-881D9, complete sequence
          Length = 17505

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 641  agcagaccagaattgccagggaagc 665
            |||||||||||| ||||||||||||
Sbjct: 4527 agcagaccagaagtgccagggaagc 4503

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>dbj|AP003174.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-136I14, complete
              sequence
          Length = 170156

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 79     gaaagacaaaataaacaaaaa 99
              |||||||||||||||||||||
Sbjct: 147320 gaaagacaaaataaacaaaaa 147340

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>emb|AL672254.9| Mouse DNA sequence from clone RP23-409H23 on chromosome X, complete
              sequence
          Length = 173251

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 82     agacaaaataaacaaaaagag 102
              |||||||||||||||||||||
Sbjct: 102980 agacaaaataaacaaaaagag 103000

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>gb|AC123609.11| Mus musculus chromosome 3, clone RP23-281B17, complete sequence
          Length = 223516

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     aaagacaaaataaacaaaaa 99
              ||||||||||||||||||||
Sbjct: 162832 aaagacaaaataaacaaaaa 162851

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>ref|XM_473471.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1725

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  aggaattgctgatgacgaga 326
            ||||||||||||||||||||
Sbjct: 1580 aggaattgctgatgacgaga 1599

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>gb|AC145364.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0062D09, complete sequence
          Length = 160244

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   aggaattgctgatgacgaga 326
             ||||||||||||||||||||
Sbjct: 96842 aggaattgctgatgacgaga 96861

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>ref|XM_709168.1| Candida albicans SC5314 hypothetical protein (CaO19.4090), mRNA
          Length = 1506

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 79   gaaagacaaaataaacaaaa 98
            ||||||||||||||||||||
Sbjct: 1450 gaaagacaaaataaacaaaa 1469

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>ref|XM_709030.1| Candida albicans SC5314 hypothetical protein (CaO19.11571), mRNA
          Length = 1506

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 79   gaaagacaaaataaacaaaa 98
            ||||||||||||||||||||
Sbjct: 1450 gaaagacaaaataaacaaaa 1469

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>emb|BX936443.15| Zebrafish DNA sequence from clone CH211-202H12 in linkage group 17,
             complete sequence
          Length = 119991

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 578   atcaacatgcggaagaactt 597
             ||||||||||||||||||||
Sbjct: 43360 atcaacatgcggaagaactt 43341

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>gb|AC140404.3| Mus musculus BAC clone RP23-146B9 from chromosome 5, complete sequence
          Length = 163710

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 517   tctgggagtgagagaccatg 536
             ||||||||||||||||||||
Sbjct: 63658 tctgggagtgagagaccatg 63677

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>emb|AL713851.8| Human DNA sequence from clone RP11-526P5 on chromosome 10 Contains two
             novel genes and three CpG islands, complete sequence
          Length = 158779

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    gaaagacaaaataaacaaaa 98
             ||||||||||||||||||||
Sbjct: 72412 gaaagacaaaataaacaaaa 72431

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>emb|AL357275.14| Human DNA sequence from clone RP11-534J23 on chromosome 13, complete
             sequence
          Length = 68209

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    aaaataaacaaaaagaggca 105
             ||||||||||||||||||||
Sbjct: 62397 aaaataaacaaaaagaggca 62416

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>emb|AL353596.13| Human DNA sequence from clone CTA-212D2 on chromosome 6 Contains the 5'
             end of the HBS1L gene for HBS1-like (S. cerevisiae)
             (KIAA1038, EFRS) and a novel gene, complete sequence
          Length = 108329

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 78    tgaaagacaaaataaacaaaaaga 101
             ||||| ||||||||||||||||||
Sbjct: 79905 tgaaaaacaaaataaacaaaaaga 79928

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>gb|AC026672.44| Homo sapiens 12 BAC RP11-876K22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 230392

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     acaaaataaacaaaaagagg 103
              ||||||||||||||||||||
Sbjct: 113898 acaaaataaacaaaaagagg 113917

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>emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065O17,
             complete sequence
          Length = 167269

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   aggaattgctgatgacgaga 326
             ||||||||||||||||||||
Sbjct: 86109 aggaattgctgatgacgaga 86090

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>gb|AC022017.8| Homo sapiens chromosome 10 clone RP11-210G22, complete sequence
          Length = 180165

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     agacaaaataaacaaaaaga 101
              ||||||||||||||||||||
Sbjct: 163369 agacaaaataaacaaaaaga 163388

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>gb|AC106791.4| Homo sapiens chromosome 5 clone RP11-381K20, complete sequence
          Length = 216877

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   tgtatcataaattgatgtct 277
             ||||||||||||||||||||
Sbjct: 16219 tgtatcataaattgatgtct 16200

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>gb|AC021760.9| Homo sapiens chromosome 8, clone RP11-433L7, complete sequence
          Length = 183059

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    aaagacaaaataaacaaaaa 99
             ||||||||||||||||||||
Sbjct: 77222 aaagacaaaataaacaaaaa 77203

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>ref|XM_679631.1| PREDICTED: Danio rerio similar to Ubiquinone biosynthesis
           monooxgenase COQ6 (LOC556753), partial mRNA
          Length = 1050

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 578 atcaacatgcggaagaactt 597
           ||||||||||||||||||||
Sbjct: 664 atcaacatgcggaagaactt 683

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>gb|AC006084.1|AC006084 Homo sapiens chromosome 5, Pac clone 9c13 (LBNL H127), complete
             sequence
          Length = 121739

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   tgtatcataaattgatgtct 277
             ||||||||||||||||||||
Sbjct: 40822 tgtatcataaattgatgtct 40841

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 307     aggaattgctgatgacgaga 326
               ||||||||||||||||||||
Sbjct: 8502729 aggaattgctgatgacgaga 8502710

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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    gcttgtcctgctgctgtttt 302
              ||||||||||||||||||||
Sbjct: 896702 gcttgtcctgctgctgtttt 896721

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>emb|AL669967.12| Mouse DNA sequence from clone RP23-216M21 on chromosome X, complete
             sequence
          Length = 219583

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 76    aatgaaagacaaaataaacaaaaa 99
             ||||||| ||||||||||||||||
Sbjct: 69319 aatgaaaaacaaaataaacaaaaa 69296

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>gb|AC009716.22| Homo sapiens chromosome 18, clone RP11-504I13, complete sequence
          Length = 211981

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   tgtttttgtcaggaattgct 316
             ||||||||||||||||||||
Sbjct: 30392 tgtttttgtcaggaattgct 30411

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>gb|AC104483.2| Sus scrofa clone RP44-427G13, complete sequence
          Length = 93393

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    aaagacaaaataaacaaaaa 99
             ||||||||||||||||||||
Sbjct: 58216 aaagacaaaataaacaaaaa 58197

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>gb|AC004820.2|AC004820 Homo sapiens clone DJ0038I10, complete sequence
          Length = 139966

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   tgtatcataaattgatgtct 277
             ||||||||||||||||||||
Sbjct: 29932 tgtatcataaattgatgtct 29913

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>gb|AC151487.3| Aotus nancymaae clone CH258-321B24, complete sequence
          Length = 167396

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 75     caatgaaagacaaaataaacaaaa 98
              |||||||| |||||||||||||||
Sbjct: 162280 caatgaaacacaaaataaacaaaa 162257

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>dbj|AP000639.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-26D11, complete
             sequences
          Length = 103758

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    aaagacaaaataaacaaaaa 99
             ||||||||||||||||||||
Sbjct: 22320 aaagacaaaataaacaaaaa 22339

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>gb|U39860.1|OSU39860 Oryza sativa transcriptional activator (Ra) mRNA, complete cds
          Length = 2517

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  aggaattgctgatgacgaga 326
            ||||||||||||||||||||
Sbjct: 2035 aggaattgctgatgacgaga 2054

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 307     aggaattgctgatgacgaga 326
               ||||||||||||||||||||
Sbjct: 8573492 aggaattgctgatgacgaga 8573473

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>gb|U22657.1|MMU22657 Mus musculus genomic locus related to cellular morphology
          Length = 18278

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    aatgaaagacaaaataaacaaaaa 99
             ||||||| ||||||||||||||||
Sbjct: 15290 aatgaaaaacaaaataaacaaaaa 15313

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>gb|AC018413.10| Homo sapiens chromosome 18, clone RP11-17M16, complete sequence
          Length = 112797

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   tgtttttgtcaggaattgct 316
             ||||||||||||||||||||
Sbjct: 32502 tgtttttgtcaggaattgct 32483

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>dbj|AB021079.1| Oryza sativa Plw-OSB1 mRNA for R-type basic helix-loop-helix protein,
            complete cds
          Length = 2168

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  aggaattgctgatgacgaga 326
            ||||||||||||||||||||
Sbjct: 1812 aggaattgctgatgacgaga 1831


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,464,864
Number of Sequences: 3902068
Number of extensions: 6464864
Number of successful extensions: 136335
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135859
Number of HSP's gapped (non-prelim): 476
length of query: 665
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 642
effective length of database: 17,143,297,704
effective search space: 11005997125968
effective search space used: 11005997125968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result