Clone Information

BLAST Search Result

Clone Name	rbasd18l13
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SMC3_XENLA (O93309) Structural maintenance of chromosome 3 (Frag...	112	8e-25
2	SMC3_PONPY (Q5R4K5) Structural maintenance of chromosome 3 (Chon...	109	7e-24
3	SMC3_MOUSE (Q9CW03) Structural maintenance of chromosome 3 (Chon...	109	7e-24
4	SMC3_HUMAN (Q9UQE7) Structural maintenance of chromosome 3 (Chon...	109	7e-24
5	SMC3_BOVIN (O97594) Structural maintenance of chromosome 3 (Chon...	109	7e-24
6	SUDA_EMENI (Q00737) Chromosome segregation protein sudA (DA-box ...	109	9e-24
7	SMC3_SCHPO (O42649) Structural maintenance of chromosome 3 (Cohe...	96	1e-19
8	SMC3_YEAST (P47037) Structural maintenance of chromosome 3 (DA-b...	89	1e-17
9	SMC3_RAT (P97690) Structural maintenance of chromosome 3 (Chondr...	76	8e-14
10	SMC_METJA (Q59037) Chromosome partition protein smc homolog	55	2e-07
11	SMC_BACSU (P51834) Chromosome partition protein smc	47	5e-05
12	SMC_MYCTU (Q10970) Chromosome partition protein smc	46	9e-05
13	YAT3_RHORU (P15016) Hypothetical protein in ATPase CF(0) subunit...	45	3e-04
14	SM1L2_MOUSE (Q920F6) Structural maintenance of chromosomes 1-lik...	43	0.001
15	SMC4_CAEEL (Q20060) Structural maintenance of chromosome 4 (Prot...	42	0.001
16	SMC_MYCLE (Q9CBT5) Chromosome partition protein smc	42	0.002
17	DPY27_CAEEL (P48996) Chromosome condensation protein dpy-27 (Pro...	40	0.005
18	SMC1_YEAST (P32908) Structural maintenance of chromosome 1 (DA-b...	40	0.009
19	SMC2_YEAST (P38989) Structural maintenance of chromosome 2 (DA-b...	39	0.011
20	RECN_STRCO (Q9S220) DNA repair protein recN (Recombination prote...	39	0.011
21	SMC2_MOUSE (Q8CG48) Structural maintenance of chromosome 2-like ...	39	0.011
22	SMC1_SCHPO (O94383) Structural maintenance of chromosome 1 (Cohe...	39	0.015
23	SM1L2_HUMAN (Q8NDV3) Structural maintenance of chromosome 1-like...	39	0.020
24	SMC4_YEAST (Q12267) Structural maintenance of chromosome 4	38	0.033
25	SMC2_CHICK (Q90988) Structural maintenance of chromosome 2 (Chro...	38	0.033
26	SMC2_XENLA (P50533) Structural maintenance of chromosome 2 (Chro...	37	0.043
27	SMC4_XENLA (P50532) Structural maintenance of chromosome 4 (Chro...	37	0.043
28	SMC2_SCHPO (P41003) Structural maintenance of chromosome 2 (Chro...	37	0.043
29	SMC2_HUMAN (O95347) Structural maintenance of chromosome 2-like ...	37	0.043
30	SMC1A_RAT (Q9Z1M9) Structural maintenance of chromosome 1-like 1...	37	0.043
31	SMC1A_MOUSE (Q9CU62) Structural maintenance of chromosome 1-like...	37	0.043
32	SMC1A_HUMAN (Q14683) Structural maintenance of chromosome 1-like...	37	0.043
33	SMC1A_BOVIN (O97593) Structural maintenance of chromosome 1-like...	37	0.043
34	SMC4_SCHPO (P41004) Structural maintenance of chromosome 4 (Chro...	37	0.043
35	SMC1A_XENLA (O93308) Structural maintenance of chromosome 1 prot...	37	0.043
36	MIX1_CAEEL (Q09591) Mitotic chromosome and X-chromosome-associat...	37	0.074
37	SMC4_MICAR (Q9ERA5) Structural maintenance of chromosomes 4-like...	36	0.13
38	SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like...	36	0.13
39	DRRA_STRPE (P32010) Daunorubicin resistance ATP-binding protein ...	36	0.13
40	SMC4_MOUSE (Q8CG47) Structural maintenance of chromosomes 4-like...	36	0.13
41	P115_MYCHR (P41508) Protein P115	35	0.22
42	PEB1C_CAMJE (P45677) Probable ABC transporter ATP-binding protei...	35	0.22
43	ARTP_SHIFL (P0AAF9) Arginine transport ATP-binding protein artP	35	0.28
44	ARTP_ECOLI (P0AAF6) Arginine transport ATP-binding protein artP	35	0.28
45	ARTP_ECOL6 (P0AAF7) Arginine transport ATP-binding protein artP	35	0.28
46	ARTP_ECO57 (P0AAF8) Arginine transport ATP-binding protein artP	35	0.28
47	ARTP_HAEIN (P45092) Arginine transport ATP-binding protein artP	33	0.82
48	CYSA_MYCTU (P0A4W2) Sulfate/thiosulfate import ATP-binding prote...	33	0.82
49	CYSA_MYCBO (P0A4W3) Sulfate/thiosulfate import ATP-binding prote...	33	0.82
50	I17RA_MOUSE (Q60943) Interleukin-17 receptor A precursor (IL-17 ...	33	1.1
51	MDFI_HUMAN (Q99750) MyoD family inhibitor (Myogenic repressor I-mf)	32	1.4
52	RECN_RICCN (Q92J40) DNA repair protein recN (Recombination prote...	32	2.4
53	Y719_METJA (Q58129) Hypothetical ABC transporter ATP-binding pro...	31	3.1
54	YQIZ_BACSU (P54537) Probable amino-acid ABC transporter ATP-bind...	31	3.1
55	YXEO_BACSU (P54954) Probable amino-acid ABC transporter ATP-bind...	31	3.1
56	CBIO_SALTY (Q05596) Cobalt import ATP-binding protein cbiO	31	3.1
57	CBIO_SALTI (Q8Z5N5) Cobalt import ATP-binding protein cbiO	31	3.1
58	RECN_RICPR (Q9ZDY2) DNA repair protein recN (Recombination prote...	31	4.1
59	GCSP_CHRVO (Q7NSJ5) Glycine dehydrogenase [decarboxylating] (EC ...	31	4.1
60	I17RA_HUMAN (Q96F46) Interleukin-17 receptor A precursor (IL-17 ...	31	4.1
61	NOCP_AGRT5 (P35116) Nopaline permease ATP-binding protein P	30	6.9
62	ARAG_BACST (Q9S472) L-arabinose transport ATP-binding protein ar...	30	6.9
63	GLNQ_ECOLI (P10346) Glutamine transport ATP-binding protein glnQ	30	6.9
64	ALSA_ECOLI (P32721) D-allose transport ATP-binding protein alsA ...	30	6.9
65	RECN_VIBCH (P52118) DNA repair protein recN (Recombination prote...	30	9.1
66	RECN_ECOLI (P05824) DNA repair protein recN (Recombination prote...	30	9.1
67	MUTS2_LISMO (Q8Y7P1) MutS2 protein	30	9.1
68	ESYN_FUSEQ (Q00869) Enniatin synthetase [Includes: N-methylcyclo...	30	9.1
69	Y4TH_RHISN (P55662) Probable amino-acid ABC transporter ATP-bind...	30	9.1
70	CYSA2_SHEON (Q8E8K8) Sulfate/thiosulfate import ATP-binding prot...	30	9.1
71	ALR1_VIBPA (Q87L78) Alanine racemase 1 (EC 5.1.1.1)	30	9.1

>SMC3_XENLA (O93309) Structural maintenance of chromosome 3 (Fragment)|
          Length = 234

 Score =  112 bits (281), Expect = 8e-25
 Identities = 55/88 (62%), Positives = 67/88 (76%)
 Frame = -1

Query: 693 IQRCDPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYG 514
           IQ+CDPAPFYLFDEID ALD Q+R AV  ++  LA  A  QFI TTFRPE+L+ ADK YG
Sbjct: 148 IQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELASHA--QFITTTFRPELLESADKFYG 205

Query: 513 VTHKNRVSFINVVSKEQAMDFIEHDQTH 430
           V  +N+VS I+V++ EQA DF+E D TH
Sbjct: 206 VKFRNKVSHIDVITAEQAKDFVEDDTTH 233

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>SMC3_PONPY (Q5R4K5) Structural maintenance of chromosome 3 (Chondroitin sulfate|
            proteoglycan 6)
          Length = 1217

 Score =  109 bits (273), Expect = 7e-24
 Identities = 54/88 (61%), Positives = 66/88 (75%)
 Frame = -1

Query: 693  IQRCDPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYG 514
            IQ+CDPAPFYLFDEID ALD Q+R AV  ++  LA  A  QFI TTFRPE+L+ ADK YG
Sbjct: 1131 IQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELAVHA--QFITTTFRPELLESADKFYG 1188

Query: 513  VTHKNRVSFINVVSKEQAMDFIEHDQTH 430
            V  +N+VS I+V++ E A DF+E D TH
Sbjct: 1189 VKFRNKVSHIDVITAEMAKDFVEDDTTH 1216

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>SMC3_MOUSE (Q9CW03) Structural maintenance of chromosome 3 (Chondroitin sulfate|
            proteoglycan 6) (Chromosome segregation protein SmcD)
            (Bamacan) (Basement membrane-associated chondroitin
            proteoglycan) (Mad member-interacting protein 1)
          Length = 1217

 Score =  109 bits (273), Expect = 7e-24
 Identities = 54/88 (61%), Positives = 66/88 (75%)
 Frame = -1

Query: 693  IQRCDPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYG 514
            IQ+CDPAPFYLFDEID ALD Q+R AV  ++  LA  A  QFI TTFRPE+L+ ADK YG
Sbjct: 1131 IQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELAVHA--QFITTTFRPELLESADKFYG 1188

Query: 513  VTHKNRVSFINVVSKEQAMDFIEHDQTH 430
            V  +N+VS I+V++ E A DF+E D TH
Sbjct: 1189 VKFRNKVSHIDVITAEMAKDFVEDDTTH 1216

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>SMC3_HUMAN (Q9UQE7) Structural maintenance of chromosome 3 (Chondroitin sulfate|
            proteoglycan 6) (Chromosome-associated polypeptide)
            (hCAP) (Bamacan) (Basement membrane-associated
            chondroitin proteoglycan)
          Length = 1217

 Score =  109 bits (273), Expect = 7e-24
 Identities = 54/88 (61%), Positives = 66/88 (75%)
 Frame = -1

Query: 693  IQRCDPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYG 514
            IQ+CDPAPFYLFDEID ALD Q+R AV  ++  LA  A  QFI TTFRPE+L+ ADK YG
Sbjct: 1131 IQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELAVHA--QFITTTFRPELLESADKFYG 1188

Query: 513  VTHKNRVSFINVVSKEQAMDFIEHDQTH 430
            V  +N+VS I+V++ E A DF+E D TH
Sbjct: 1189 VKFRNKVSHIDVITAEMAKDFVEDDTTH 1216

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>SMC3_BOVIN (O97594) Structural maintenance of chromosome 3 (Chondroitin sulfate|
            proteoglycan 6)
          Length = 1218

 Score =  109 bits (273), Expect = 7e-24
 Identities = 54/88 (61%), Positives = 66/88 (75%)
 Frame = -1

Query: 693  IQRCDPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYG 514
            IQ+CDPAPFYLFDEID ALD Q+R AV  ++  LA  A  QFI TTFRPE+L+ ADK YG
Sbjct: 1132 IQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELAVHA--QFITTTFRPELLESADKFYG 1189

Query: 513  VTHKNRVSFINVVSKEQAMDFIEHDQTH 430
            V  +N+VS I+V++ E A DF+E D TH
Sbjct: 1190 VKFRNKVSHIDVITAEMAKDFVEDDTTH 1217

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>SUDA_EMENI (Q00737) Chromosome segregation protein sudA (DA-box protein sudA)|
          Length = 1211

 Score =  109 bits (272), Expect = 9e-24
 Identities = 50/87 (57%), Positives = 68/87 (78%)
 Frame = -1

Query: 693  IQRCDPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYG 514
            IQ CDPAPFYLFDEIDA LD QYRTAV  +++ ++D  + QFI TTFRPE+L VA+K YG
Sbjct: 1125 IQACDPAPFYLFDEIDANLDAQYRTAVAQMLKTISDSTNGQFICTTFRPEMLHVAEKCYG 1184

Query: 513  VTHKNRVSFINVVSKEQAMDFIEHDQT 433
            V+ + + S I+VVS+E+A+ F+E  ++
Sbjct: 1185 VSFRQKASTIDVVSREEALKFVEEQKS 1211

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>SMC3_SCHPO (O42649) Structural maintenance of chromosome 3 (Cohesin complex Psm3|
            subunit)
          Length = 1194

 Score = 95.5 bits (236), Expect = 1e-19
 Identities = 45/83 (54%), Positives = 62/83 (74%)
 Frame = -1

Query: 693  IQRCDPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYG 514
            IQRCDPAPF + DE DA LD QYR+A+ ++V+ ++  +  QFI TTFRPE++KVAD  YG
Sbjct: 1113 IQRCDPAPFNILDECDANLDAQYRSAIAAMVKEMSKTS--QFICTTFRPEMVKVADNFYG 1170

Query: 513  VTHKNRVSFINVVSKEQAMDFIE 445
            V   ++VS +  +SKE+AM F+E
Sbjct: 1171 VMFNHKVSTVESISKEEAMAFVE 1193

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>SMC3_YEAST (P47037) Structural maintenance of chromosome 3 (DA-box protein SMC3)|
          Length = 1230

 Score = 89.4 bits (220), Expect = 1e-17
 Identities = 45/82 (54%), Positives = 63/82 (76%)
 Frame = -1

Query: 693  IQRCDPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYG 514
            IQ  DPA FYLFDEIDAALD QYRTAV ++++ L+  A  QFI TTFR ++L+VADK + 
Sbjct: 1142 IQMVDPASFYLFDEIDAALDKQYRTAVATLLKELSKNA--QFICTTFRTDMLQVADKFFR 1199

Query: 513  VTHKNRVSFINVVSKEQAMDFI 448
            V ++N++S +  V++E+A+ FI
Sbjct: 1200 VKYENKISTVIEVNREEAIGFI 1221

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>SMC3_RAT (P97690) Structural maintenance of chromosome 3 (Chondroitin sulfate|
            proteoglycan 6) (Chromosome segregation protein SmcD)
            (Bamacan) (Basement membrane-associated chondroitin
            proteoglycan)
          Length = 1191

 Score = 76.3 bits (186), Expect = 8e-14
 Identities = 38/60 (63%), Positives = 44/60 (73%)
 Frame = -1

Query: 693  IQRCDPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYG 514
            IQ+CDPAPFYLFDEID ALD Q+R AV  ++  LA     QFI TTFRPE+L+ ADK  G
Sbjct: 1131 IQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELA--VHAQFITTTFRPELLESADKSSG 1188

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>SMC_METJA (Q59037) Chromosome partition protein smc homolog|
          Length = 1169

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 26/68 (38%), Positives = 45/68 (66%)
 Frame = -1

Query: 693  IQRCDPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYG 514
            IQR +P+PFY+ DE+DAALD +  + +  +++  +   D+QFI  + R +++  AD +YG
Sbjct: 1097 IQRLNPSPFYVLDEVDAALDVKNVSLIADMIKNAS--KDSQFIVISHREQMVSKADVVYG 1154

Query: 513  VTHKNRVS 490
            V  +N +S
Sbjct: 1155 VYMENGLS 1162

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>SMC_BACSU (P51834) Chromosome partition protein smc|
          Length = 1186

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
 Frame = -1

Query: 693  IQRCDPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYG 514
            I +  P PF + DE++AALD          +++ +  +DTQFI  T R   ++ AD +YG
Sbjct: 1105 ILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYS--SDTQFIVITHRKGTMEEADVLYG 1162

Query: 513  VT-HKNRVSFINVVSKEQAMDFIE 445
            VT  ++ VS +  V  E+  +F++
Sbjct: 1163 VTMQESGVSKVISVKLEETKEFVQ 1186

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>SMC_MYCTU (Q10970) Chromosome partition protein smc|
          Length = 1205

 Score = 46.2 bits (108), Expect = 9e-05
 Identities = 25/65 (38%), Positives = 39/65 (60%)
 Frame = -1

Query: 693  IQRCDPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYG 514
            I R  P+PFY+ DE++AALD      + S+  +L +   +Q I  T +   ++VAD +YG
Sbjct: 1119 IFRARPSPFYIMDEVEAALDDVNLRRLLSLFEQLRE--QSQIIIITHQKPTMEVADALYG 1176

Query: 513  VTHKN 499
            VT +N
Sbjct: 1177 VTMQN 1181

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>YAT3_RHORU (P15016) Hypothetical protein in ATPase CF(0) subunits 3'region|
           (URF3) (Fragment)
          Length = 173

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = -1

Query: 681 DPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYGVTHK 502
           +PAP  + DE+DA LD        +++R L D   T+F+  T     +   D+++GVT  
Sbjct: 85  NPAPICVLDEVDAPLDDANVDRFCAMLRHLTDTTGTRFLVVTHHRMTMARMDRLFGVTMA 144

Query: 501 NR-VSFINVVSKEQAMDFIE 445
            R VS +  V   QA D +E
Sbjct: 145 ERGVSSLVSVDLCQAEDLVE 164

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>SM1L2_MOUSE (Q920F6) Structural maintenance of chromosomes 1-like 2 protein|
            (SMC1beta protein)
          Length = 1248

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQF--IATTFRPEILKVADKIYGV-T 508
            PAPF++ DE+DAALD    T +G V   + + +  QF  I  + + E    AD + GV  
Sbjct: 1144 PAPFFVLDEVDAALD---NTNIGKVSSYIKEQSQEQFQMIIISLKEEFYSKADALIGVYP 1200

Query: 507  HKNRVSFINVVSKEQAMDFIEHDQTHNAS*GRPRGTR 397
              N   F +V++ + +      DQ  + S  +PR  R
Sbjct: 1201 EHNECMFSHVLTLDLSKYPDTEDQEGSRSHRKPRVPR 1237

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>SMC4_CAEEL (Q20060) Structural maintenance of chromosome 4 (Protein smc-4)|
          Length = 1549

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 21/56 (37%), Positives = 35/56 (62%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYGV 511
            P PFY+ DEIDAALD +  + +   VR+  + A  QFI  + R  + ++A+++ G+
Sbjct: 1299 PTPFYVMDEIDAALDYRNVSIIAQYVRQKTENA--QFIIISLRNNMFELANRLVGI 1352

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>SMC_MYCLE (Q9CBT5) Chromosome partition protein smc|
          Length = 1203

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 23/62 (37%), Positives = 35/62 (56%)
 Frame = -1

Query: 693  IQRCDPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYG 514
            I +  P+PFY+ DE++AALD      +  V  +L     +Q I  T +   ++VAD +YG
Sbjct: 1117 IFKARPSPFYIMDEVEAALDDVNLCRLIGVFEQL--RGQSQLIIITHQKPTMEVADTLYG 1174

Query: 513  VT 508
            VT
Sbjct: 1175 VT 1176

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>DPY27_CAEEL (P48996) Chromosome condensation protein dpy-27 (Protein dumpty-27)|
          Length = 1469

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 17/56 (30%), Positives = 32/56 (57%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYGV 511
            P P Y+ DEIDAALD    + + + ++      + QFI  + R ++ +V +++ G+
Sbjct: 1266 PTPLYVMDEIDAALDLNNVSLIANYIKHSERTRNAQFIIISLRNQMFEVGNRLLGI 1321

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>SMC1_YEAST (P32908) Structural maintenance of chromosome 1 (DA-box protein SMC1)|
          Length = 1225

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 20/74 (27%), Positives = 40/74 (54%)
 Frame = -1

Query: 693  IQRCDPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYG 514
            I    P+PF++ DE+DAALD      + + +RR  +  D QFI  + +  + + +D + G
Sbjct: 1145 INSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTMFEKSDALVG 1203

Query: 513  VTHKNRVSFINVVS 472
            V  + + +   +++
Sbjct: 1204 VYRQQQENSSKIIT 1217

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>SMC2_YEAST (P38989) Structural maintenance of chromosome 2 (DA-box protein SMC2)|
          Length = 1170

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 17/68 (25%), Positives = 38/68 (55%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYGVTHKN 499
            PAP Y+ DE+DAALD  +   +G +++       +QFI  + +  +   A++++    ++
Sbjct: 1105 PAPMYILDEVDAALDLSHTQNIGHLIK--TRFKGSQFIVVSLKEGMFANANRVFRTRFQD 1162

Query: 498  RVSFINVV 475
              S ++++
Sbjct: 1163 GTSVVSIM 1170

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>RECN_STRCO (Q9S220) DNA repair protein recN (Recombination protein N)|
          Length = 572

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = -1

Query: 681 DPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADK 523
           DP P YLFDE+DA +  +    +G  + RLA  A  Q +  T  P++   AD+
Sbjct: 465 DPVPTYLFDEVDAGVGGKAAVEIGRRLARLARSA--QVVVVTHLPQVAAFADR 515

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>SMC2_MOUSE (Q8CG48) Structural maintenance of chromosome 2-like 1 protein|
            (Chromosome-associated protein E) (XCAP-E homolog)
            (FGF-inducible protein 16)
          Length = 1191

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 21/73 (28%), Positives = 38/73 (52%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYGVTHKN 499
            PAP Y+ DE+DAALD  +   +G ++R       +QFI  + +  +   A+ ++     +
Sbjct: 1106 PAPIYILDEVDAALDLSHTQNIGQMLR--THFTHSQFIVVSLKEGMFNNANVLFKTKFVD 1163

Query: 498  RVSFINVVSKEQA 460
             VS +   ++ QA
Sbjct: 1164 GVSTVARFTQSQA 1176

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>SMC1_SCHPO (O94383) Structural maintenance of chromosome 1 (Cohesin complex|
            subunit psm1) (Chromosome segregation protein smc1)
          Length = 1233

 Score = 38.9 bits (89), Expect = 0.015
 Identities = 18/61 (29%), Positives = 35/61 (57%)
 Frame = -1

Query: 693  IQRCDPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYG 514
            I    P+PF++ DEIDAALD    T + + +R+ A  +  QF+  + + ++   ++ + G
Sbjct: 1148 IHSYQPSPFFVLDEIDAALDQTNVTKIANYIRQHAS-SGFQFVVISLKNQLFSKSEALVG 1206

Query: 513  V 511
            +
Sbjct: 1207 I 1207

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>SM1L2_HUMAN (Q8NDV3) Structural maintenance of chromosome 1-like 2 protein|
            (SMC1beta protein)
          Length = 1235

 Score = 38.5 bits (88), Expect = 0.020
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQF--IATTFRPEILKVADKIYGV 511
            PAPF++ DE+DAALD    T +G V   + +    QF  I  + + E    AD + G+
Sbjct: 1145 PAPFFVLDEVDAALD---NTNIGKVSSYIKEQTQDQFQMIVISLKEEFYSRADALIGI 1199

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>SMC4_YEAST (Q12267) Structural maintenance of chromosome 4|
          Length = 1418

 Score = 37.7 bits (86), Expect = 0.033
 Identities = 20/61 (32%), Positives = 34/61 (55%)
 Frame = -1

Query: 693  IQRCDPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYG 514
            + +  P P Y+ DEIDAALD +  + V + ++     A  QFI  + R  + ++A ++ G
Sbjct: 1339 LHKYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNA--QFIVISLRNNMFELAQQLVG 1396

Query: 513  V 511
            V
Sbjct: 1397 V 1397

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>SMC2_CHICK (Q90988) Structural maintenance of chromosome 2 (Chromosome scaffold|
            protein ScII)
          Length = 1189

 Score = 37.7 bits (86), Expect = 0.033
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYGVTHKN 499
            PAP Y+ DE+DAALD  +   +G ++   A    +QF+  + +  +   A+ +Y     +
Sbjct: 1106 PAPIYILDEVDAALDLSHTQNIGQMLH--AHFKQSQFLVVSLKDGMFNNANVLYRTKFVD 1163

Query: 498  RVSFIN 481
             +S ++
Sbjct: 1164 GISTVS 1169

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>SMC2_XENLA (P50533) Structural maintenance of chromosome 2|
            (Chromosome-associated protein E) (Chromosome assembly
            protein XCAP-E)
          Length = 1203

 Score = 37.4 bits (85), Expect = 0.043
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYGVTHKN 499
            PAP Y+ DE+DAALD  +   +G ++R       +QFI  + +  +   A+ ++     +
Sbjct: 1107 PAPIYILDEVDAALDLSHTQNIGQMLR--THFRHSQFIVVSLKDGMFNNANVLFKTKFVD 1164

Query: 498  RVSFINVVSKEQ 463
             VS +   ++ Q
Sbjct: 1165 GVSTVARFAQNQ 1176

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>SMC4_XENLA (P50532) Structural maintenance of chromosome 4|
            (Chromosome-associated protein C) (Chromosome assembly
            protein XCAP-C)
          Length = 1290

 Score = 37.4 bits (85), Expect = 0.043
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYGV--TH 505
            P P Y  DEIDAALD +  + V   +       + QFI  + R  + ++AD++ G+  TH
Sbjct: 1206 PTPLYFMDEIDAALDFKNVSIVAFYI--YEQTKNAQFIIISLRNNMFEIADRLIGIYKTH 1263

Query: 504  KNRVS 490
                S
Sbjct: 1264 NTTKS 1268

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>SMC2_SCHPO (P41003) Structural maintenance of chromosome 2 (Chromosome|
            segregation protein cut14) (Cell untimely torn protein
            14)
          Length = 1172

 Score = 37.4 bits (85), Expect = 0.043
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYGV 511
            PAP Y+ DEIDAALD  +   +G +++       +QFI  + +  +   A++++ V
Sbjct: 1107 PAPMYILDEIDAALDLSHTQNIGRLIK--TKFKGSQFIIVSLKEGMFTNANRLFHV 1160

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>SMC2_HUMAN (O95347) Structural maintenance of chromosome 2-like 1 protein|
            (Chromosome-associated protein E) (hCAP-E) (XCAP-E
            homolog)
          Length = 1197

 Score = 37.4 bits (85), Expect = 0.043
 Identities = 19/65 (29%), Positives = 34/65 (52%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYGVTHKN 499
            PAP Y+ DE+DAALD  +   +G ++R       +QFI  + +  +   A+ ++     +
Sbjct: 1106 PAPIYILDEVDAALDLSHTQNIGQMLR--THFTHSQFIVVSLKEGMFNNANVLFKTKFVD 1163

Query: 498  RVSFI 484
             VS +
Sbjct: 1164 GVSTV 1168

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>SMC1A_RAT (Q9Z1M9) Structural maintenance of chromosome 1-like 1 protein|
            (SMC-protein)
          Length = 1233

 Score = 37.4 bits (85), Expect = 0.043
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQF--IATTFRPEILKVADKIYGV 511
            PAPF++ DEIDAALD    T +G V   + + +   F  I  + + E    A+ + GV
Sbjct: 1149 PAPFFVLDEIDAALD---NTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGV 1203

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>SMC1A_MOUSE (Q9CU62) Structural maintenance of chromosome 1-like 1 protein|
            (SMC1alpha protein) (Chromosome segregation protein SmcB)
            (Sb1.8)
          Length = 1233

 Score = 37.4 bits (85), Expect = 0.043
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQF--IATTFRPEILKVADKIYGV 511
            PAPF++ DEIDAALD    T +G V   + + +   F  I  + + E    A+ + GV
Sbjct: 1149 PAPFFVLDEIDAALD---NTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGV 1203

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>SMC1A_HUMAN (Q14683) Structural maintenance of chromosome 1-like 1 protein|
            (SMC1alpha protein) (DXS423E protein) (Sb1.8)
          Length = 1233

 Score = 37.4 bits (85), Expect = 0.043
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQF--IATTFRPEILKVADKIYGV 511
            PAPF++ DEIDAALD    T +G V   + + +   F  I  + + E    A+ + GV
Sbjct: 1149 PAPFFVLDEIDAALD---NTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGV 1203

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>SMC1A_BOVIN (O97593) Structural maintenance of chromosome 1-like 1 protein|
            (SMC-protein)
          Length = 1233

 Score = 37.4 bits (85), Expect = 0.043
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQF--IATTFRPEILKVADKIYGV 511
            PAPF++ DEIDAALD    T +G V   + + +   F  I  + + E    A+ + GV
Sbjct: 1149 PAPFFVLDEIDAALD---NTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGV 1203

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>SMC4_SCHPO (P41004) Structural maintenance of chromosome 4 (Chromosome|
            segregation protein cut3) (Cell untimely torn protein 3)
          Length = 1324

 Score = 37.4 bits (85), Expect = 0.043
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYGV-THK 502
            P P Y+ DEIDAALD +  + V + ++     A  QFI  + R  + +++ ++ G+    
Sbjct: 1251 PTPLYVMDEIDAALDFKNVSIVANYIKERTKNA--QFIVISLRSNMFELSSRLVGIYKTA 1308

Query: 501  NRVSFINVVSKEQAMD 454
            N    + + +KE   D
Sbjct: 1309 NMTKSVTINNKEILTD 1324

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>SMC1A_XENLA (O93308) Structural maintenance of chromosome 1 protein (xSMC1)|
          Length = 1232

 Score = 37.4 bits (85), Expect = 0.043
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLAD--MADTQFIATTFRPEILKVADKIYGV 511
            P+PF++ DEIDAALD    T +G V   + +  M++ Q I  + + E    A+ + GV
Sbjct: 1149 PSPFFVLDEIDAALD---NTNIGKVANYIKEQSMSNFQAIVISLKEEFYTKAESLIGV 1203

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>MIX1_CAEEL (Q09591) Mitotic chromosome and X-chromosome-associated protein mix-1|
            (Structural maintenance of chromosome 2) (Lethal protein
            29)
          Length = 1244

 Score = 36.6 bits (83), Expect = 0.074
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIY 517
            PAP Y+ DE+DAALD  +   +G +++        QFI  + +  +   AD ++
Sbjct: 1121 PAPLYILDEVDAALDLSHTANIGMMIK--THFHHNQFIIVSLKQGMFSNADVLF 1172

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>SMC4_MICAR (Q9ERA5) Structural maintenance of chromosomes 4-like 1 protein|
            (Chromosome-associated polypeptide C) (XCAP-C homolog)
            (Fragment)
          Length = 1243

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYGV 511
            P P Y  DEIDAALD +  + V   +       + QFI  + R  + +++D++ G+
Sbjct: 1167 PTPLYFMDEIDAALDFKNVSIVAFYI--YEQTKNAQFIIISLRNNMFEISDRLIGI 1220

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>SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like 1 protein|
            (Chromosome-associated polypeptide C) (hCAP-C) (XCAP-C
            homolog)
          Length = 1288

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYGV 511
            P P Y  DEIDAALD +  + V   +       + QFI  + R  + +++D++ G+
Sbjct: 1212 PTPLYFMDEIDAALDFKNVSIVAFYI--YEQTKNAQFIIISLRNNMFEISDRLIGI 1265

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>DRRA_STRPE (P32010) Daunorubicin resistance ATP-binding protein drrA|
          Length = 330

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 672 PFYLF-DEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYGVTH 505
           P  LF DE    LDP+ R  V  +VR L D   T  + T +  E  ++AD+I  + H
Sbjct: 158 PDLLFLDEPTTGLDPRSRNQVWDIVRALVDAGTTVLLTTQYLDEADQLADRIAVIDH 214

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>SMC4_MOUSE (Q8CG47) Structural maintenance of chromosomes 4-like 1 protein|
            (Chromosome-associated polypeptide C) (XCAP-C homolog)
          Length = 1286

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -1

Query: 678  PAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYGV 511
            P P Y  DEIDAALD +  + V   +       + QFI  + R  + +++D++ G+
Sbjct: 1210 PTPLYFMDEIDAALDFKNVSIVAFYI--YEQTKNAQFIIISLRNNMFEISDRLIGI 1263

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>P115_MYCHR (P41508) Protein P115|
          Length = 979

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = -1

Query: 693  IQRCDPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYG 514
            I +  P P  + DE++AALD          ++ L +  +TQF+  T R   +   D++ G
Sbjct: 894  ILKARPIPLCILDEVEAALDESNVIRYVEFLKLLKE--NTQFLIITHRSGTMSRVDQLLG 951

Query: 513  VTHKNR-VSFINVVSKEQAMDFIEHD 439
            VT + R V+ I  V   +A + ++ +
Sbjct: 952  VTMQKRGVTSIFSVELSKAKEMLKDE 977

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>PEB1C_CAMJE (P45677) Probable ABC transporter ATP-binding protein PEB1C|
          Length = 242

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -1

Query: 684 CDPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILK-VADKI 520
           C   P+ LFDE  +ALDP+    V  V++ ++  ++T  +  T      K VAD+I
Sbjct: 151 CTKKPYILFDEPTSALDPETIQEVLDVMKEISHQSNTTMVVVTHEMGFAKEVADRI 206

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>ARTP_SHIFL (P0AAF9) Arginine transport ATP-binding protein artP|
          Length = 242

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = -1

Query: 663 LFDEIDAALDPQYRTAVGSVVRRLADMADTQFIAT 559
           LFDE  AALDP+    + S++R LA+   TQ I T
Sbjct: 164 LFDEPTAALDPEITAQIVSIIRELAETNITQVIVT 198

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>ARTP_ECOLI (P0AAF6) Arginine transport ATP-binding protein artP|
          Length = 242

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = -1

Query: 663 LFDEIDAALDPQYRTAVGSVVRRLADMADTQFIAT 559
           LFDE  AALDP+    + S++R LA+   TQ I T
Sbjct: 164 LFDEPTAALDPEITAQIVSIIRELAETNITQVIVT 198

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>ARTP_ECOL6 (P0AAF7) Arginine transport ATP-binding protein artP|
          Length = 242

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = -1

Query: 663 LFDEIDAALDPQYRTAVGSVVRRLADMADTQFIAT 559
           LFDE  AALDP+    + S++R LA+   TQ I T
Sbjct: 164 LFDEPTAALDPEITAQIVSIIRELAETNITQVIVT 198

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>ARTP_ECO57 (P0AAF8) Arginine transport ATP-binding protein artP|
          Length = 242

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = -1

Query: 663 LFDEIDAALDPQYRTAVGSVVRRLADMADTQFIAT 559
           LFDE  AALDP+    + S++R LA+   TQ I T
Sbjct: 164 LFDEPTAALDPEITAQIVSIIRELAETNITQVIVT 198

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>ARTP_HAEIN (P45092) Arginine transport ATP-binding protein artP|
          Length = 243

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -1

Query: 663 LFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKI 520
           LFDE  AALDP+    V  +++ L +   TQ I T       KVA K+
Sbjct: 165 LFDEPTAALDPEITAQVVDIIKELQETGITQVIVTHEVNVAQKVATKV 212

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>CYSA_MYCTU (P0A4W2) Sulfate/thiosulfate import ATP-binding protein cysA (EC|
           3.6.3.25) (Sulfate-transporting ATPase)
          Length = 353

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
 Frame = -1

Query: 663 LFDEIDAALDPQYRTAVGSVVRRLADMAD-TQFIATTFRPEILKVADKIYGVTHKNRVSF 487
           L DE   ALD + R  + + +RRL D    T  + T  + E L VAD+I  V HK R+  
Sbjct: 159 LLDEPFGALDAKVREELRAWLRRLHDEVHVTTVLVTHDQAEALDVADRI-AVLHKGRIEQ 217

Query: 486 I-------NVVSKEQAMDFIEHDQTHNAS*GRPRGTR 397
           +       +  +    M F+    T N S  RP   R
Sbjct: 218 VGSPTDVYDAPANAFVMSFLGAVSTLNGSLVRPHDIR 254

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>CYSA_MYCBO (P0A4W3) Sulfate/thiosulfate import ATP-binding protein cysA (EC|
           3.6.3.25) (Sulfate-transporting ATPase)
          Length = 353

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
 Frame = -1

Query: 663 LFDEIDAALDPQYRTAVGSVVRRLADMAD-TQFIATTFRPEILKVADKIYGVTHKNRVSF 487
           L DE   ALD + R  + + +RRL D    T  + T  + E L VAD+I  V HK R+  
Sbjct: 159 LLDEPFGALDAKVREELRAWLRRLHDEVHVTTVLVTHDQAEALDVADRI-AVLHKGRIEQ 217

Query: 486 I-------NVVSKEQAMDFIEHDQTHNAS*GRPRGTR 397
           +       +  +    M F+    T N S  RP   R
Sbjct: 218 VGSPTDVYDAPANAFVMSFLGAVSTLNGSLVRPHDIR 254

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>I17RA_MOUSE (Q60943) Interleukin-17 receptor A precursor (IL-17 receptor)|
          Length = 864

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 261 HGLMLPFVY-PWTLYATVNVAVYI*LAFGLLT*RVRRSLWIAKTYLSMLREHLRDWRCVF 85
           HG ++P ++  WTL    ++         +L       L +   +LSML+ H + WR  F
Sbjct: 87  HGELVPVLHVEWTLQTDASILYLEGAELSVLQLNTNERLCVKFQFLSMLQHHRKRWRFSF 146

Query: 84  FEFVL 70
             FV+
Sbjct: 147 SHFVV 151

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>MDFI_HUMAN (Q99750) MyoD family inhibitor (Myogenic repressor I-mf)|
          Length = 246

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -3

Query: 340 RTEERLATSPSLFVSCSKMFTQETKDTWAHVAVRLPLDIVCHC*CSCVYLVSLWIVNLKS 161
           +   +L T PSL    SK     +K T + + ++   D   HC  SC++   L + N+  
Sbjct: 125 KAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLCNI-- 182

Query: 160 A*EPLDC 140
               LDC
Sbjct: 183 ---VLDC 186

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>RECN_RICCN (Q92J40) DNA repair protein recN (Recombination protein N)|
          Length = 545

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 672 PFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVAD 526
           P  +FDEID  +  +    VG  +++L+ +  TQ I  T +P++   AD
Sbjct: 446 PSIIFDEIDVGISGEVADKVGERLKKLSSV--TQVIVITHQPQVAGKAD 492

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>Y719_METJA (Q58129) Hypothetical ABC transporter ATP-binding protein MJ0719|
          Length = 600

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 675 APFYLFDEIDAALDPQYRTAVGSVVRRLAD 586
           A  YL DE  A LD + R  V  V+RR+AD
Sbjct: 481 ADIYLLDEPSAFLDVEQRLRVSKVIRRIAD 510

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>YQIZ_BACSU (P54537) Probable amino-acid ABC transporter ATP-binding protein|
           yqiZ
          Length = 240

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
 Frame = -1

Query: 663 LFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYG------VTHK 502
           LFDE  +ALDP+    V  V++ L +   T  I T       +VAD++        V   
Sbjct: 159 LFDEPTSALDPEMVKEVLQVMKELVETGMTMVIVTHEMGFAKEVADRVLFMDQGMIVEDG 218

Query: 501 NRVSFINVVSKEQAMDFIE 445
           N   F      ++A DF+E
Sbjct: 219 NPKEFFMSPKSKRAQDFLE 237

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>YXEO_BACSU (P54954) Probable amino-acid ABC transporter ATP-binding protein|
           yxeO
          Length = 249

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 663 LFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKI 520
           L DE  +ALDP+  T V  V++ +A+   T  I T       +VAD++
Sbjct: 162 LLDEPTSALDPELVTGVLQVIKSIAEKQTTMIIVTHEMAFAKEVADQV 209

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>CBIO_SALTY (Q05596) Cobalt import ATP-binding protein cbiO|
          Length = 271

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -1

Query: 675 APFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIY 517
           A + L DE  A LDP  RT + +++RR+    +   I++     I +++D +Y
Sbjct: 155 ARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVY 207

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>CBIO_SALTI (Q8Z5N5) Cobalt import ATP-binding protein cbiO|
          Length = 271

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -1

Query: 675 APFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIY 517
           A + L DE  A LDP  RT + +++RR+    +   I++     I +++D +Y
Sbjct: 155 ARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVY 207

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>RECN_RICPR (Q9ZDY2) DNA repair protein recN (Recombination protein N)|
          Length = 554

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 672 PFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVAD 526
           P  +FDEID  +  +    VG  +++L+ +  TQ I  T +P++   AD
Sbjct: 447 PSIIFDEIDVGIGGEAADKVGDRLKKLSSV--TQVIVITHQPQVAGKAD 493

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>GCSP_CHRVO (Q7NSJ5) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 950

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 137 LAIQRLLRTLQVNNPKAN*IYTATLTVAYNVQ 232
           L   R   T+QV+ PKA+ IY A L   YN++
Sbjct: 378 LVFDRFFDTVQVDAPKADAIYAAALAAGYNLR 409

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>I17RA_HUMAN (Q96F46) Interleukin-17 receptor A precursor (IL-17 receptor)|
          Length = 866

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
 Frame = -1

Query: 282 LHRKRKIHGLMLPFVY-PWTLYATVNVAVYI*LAFGLLT*RVRRSLWIAKTYLSMLREHL 106
           LH      G + P  +  WTL    ++         +L       L +   +LS LR H 
Sbjct: 80  LHFAHTQQGDLFPVAHIEWTLQTDASILYLEGAELSVLQLNTNERLCVRFEFLSKLRHHH 139

Query: 105 RDWRCVFFEFVL 70
           R WR  F  FV+
Sbjct: 140 RRWRFTFSHFVV 151

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>NOCP_AGRT5 (P35116) Nopaline permease ATP-binding protein P|
          Length = 257

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 663 LFDEIDAALDPQYRTAVGSVVRRLADMADTQFIAT 559
           LFDE  +ALDP+    V  V+R+LA+   T  + T
Sbjct: 176 LFDEPTSALDPELVGEVLKVIRKLAEEGRTMVVVT 210

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>ARAG_BACST (Q9S472) L-arabinose transport ATP-binding protein araG (EC|
           3.6.3.17)
          Length = 513

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 19/68 (27%), Positives = 38/68 (55%)
 Frame = -1

Query: 663 LFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYGVTHKNRVSFI 484
           + DE    +D   +  + +++++LAD      + ++  PEIL + D+IY V  + R++  
Sbjct: 431 ILDEPTRGIDVGAKYEIYTIIQQLADAGKGILMISSELPEILGMCDRIY-VMSEGRIT-- 487

Query: 483 NVVSKEQA 460
             VS+E+A
Sbjct: 488 GEVSREEA 495

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>GLNQ_ECOLI (P10346) Glutamine transport ATP-binding protein glnQ|
          Length = 240

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
 Frame = -1

Query: 663 LFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYGVTHKNRVS-- 490
           LFDE  +ALDP+ R  V  V++ LA+   T  I T       KVA ++  +  K R++  
Sbjct: 159 LFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFI-DKGRIAED 217

Query: 489 -----FINVVSKEQAMDFIEH 442
                 I     ++  +F++H
Sbjct: 218 GNPQVLIKNPPSQRLQEFLQH 238

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>ALSA_ECOLI (P32721) D-allose transport ATP-binding protein alsA (EC 3.6.3.17)|
          Length = 510

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 663 LFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKI 520
           +FDE    +D   +  +  V+R+LAD      + ++  PEI+ V D+I
Sbjct: 432 IFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRI 479

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>RECN_VIBCH (P52118) DNA repair protein recN (Recombination protein N)|
          Length = 554

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 672 PFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEI 541
           P  +FDE+D  +       VG ++R+L +   TQ +  T  P++
Sbjct: 454 PSLIFDEVDVGISGPTAAVVGKLLRKLGE--STQVLCVTHLPQV 495

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>RECN_ECOLI (P05824) DNA repair protein recN (Recombination protein N)|
          Length = 553

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 672 PFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYGVT 508
           P  +FDE+D  +       VG ++R+L +   TQ +  T  P++     + Y V+
Sbjct: 454 PALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLPQVAGCGHQHYFVS 506

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>MUTS2_LISMO (Q8Y7P1) MutS2 protein|
          Length = 785

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -1

Query: 693 IQRCDPAPFYLFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILKVADKIYG 514
           +++ +     L+DE+ A  DPQ   A+   +   +       +ATT  PE+     K YG
Sbjct: 403 LEKVNQKSLILYDELGAGTDPQEGAALAIAILDASHEKGASVVATTHYPEL-----KAYG 457

Query: 513 VTHKNRVSFIN 481
               NRV   N
Sbjct: 458 Y---NRVHATN 465

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>ESYN_FUSEQ (Q00869) Enniatin synthetase [Includes: N-methylcyclopeptide|
            synthetase (EC 6.3.2.-);
            S-adenosyl-L-methionine-dependent N-methyltransferase (EC
            2.1.1.-)]
          Length = 3131

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 571  LGVRHVSQTSNHAPDSRSVLRIQSSINLIKEVERSWVTSLD 693
            +G + +SQ ++  P  +S   I S  +   ++E  W+TSLD
Sbjct: 988  MGSKILSQKTHSTPSQQSQAAISSGTDTYTKLESIWITSLD 1028

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>Y4TH_RHISN (P55662) Probable amino-acid ABC transporter ATP-binding protein|
           y4tH
          Length = 257

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 663 LFDEIDAALDPQYRTAVGSVVRRLADMADTQFIATTFRPEILK-VADKI 520
           LFDE  +ALDP+    V +V+RRLA   D   +  T      + ++D++
Sbjct: 173 LFDEPTSALDPELVGEVLNVIRRLAAEHDLTMLMVTHEMRFAREISDRV 221

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>CYSA2_SHEON (Q8E8K8) Sulfate/thiosulfate import ATP-binding protein cysA 2 (EC|
           3.6.3.25) (Sulfate-transporting ATPase 2)
          Length = 354

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -1

Query: 663 LFDEIDAALDPQYRTAVGSVVRRLADMAD-TQFIATTFRPEILKVADKIYGVTHKNRV 493
           L DE   ALD + R  +   +RRL D  + T    T  + E L+VADKI  V +K R+
Sbjct: 159 LLDEPFGALDAKVRAELRRWLRRLHDEINVTTVFVTHDQEEALEVADKIV-VMNKGRI 215

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>ALR1_VIBPA (Q87L78) Alanine racemase 1 (EC 5.1.1.1)|
          Length = 358

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 553 ECGGYELGVRHVSQTSNHAPDSRSVLRIQSSINL 654
           +  GY  G+RHV++ +NHA D+  V RI+ ++ L
Sbjct: 34  KANGYGHGLRHVAKHANHA-DAFGVARIEEALQL 66


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,558,645
Number of Sequences: 219361
Number of extensions: 2071688
Number of successful extensions: 6016
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 5799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5998
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6856295237
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result