ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18l13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ000233.1|HVJ000233 Hordeum vulgare mRNA for expressed sequ... 509 e-141
2dbj|AK105135.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 3e-40
3ref|XM_464028.1| Oryza sativa (japonica cultivar-group), mRNA 172 1e-39
4emb|AJ535211.1|OSA535211 Oryza sativa mRNA for SMC3 protein 172 1e-39
5ref|XM_464029.1| Oryza sativa (japonica cultivar-group), mRNA 135 2e-28
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
7dbj|AP004997.2| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
8gb|AY104981.1| Zea mays PCO103085 mRNA sequence 119 1e-23
9dbj|AP004799.3| Oryza sativa (japonica cultivar-group) genomic D... 88 5e-14
10ref|NM_128275.3| Arabidopsis thaliana TTN7 (TITAN7); ATP binding... 56 2e-04
11ref|NM_174295.1| Bos taurus chondroitin sulfate proteoglycan 6 (... 56 2e-04
12emb|AJ504805.2|ATH504805 Arabidopsis thaliana mRNA for SMC3 protein 56 2e-04
13gb|AY525642.1| Arabidopsis thaliana SMC3 (SMC3) mRNA, complete cds 56 2e-04
14gb|AC007154.4| Arabidopsis thaliana chromosome 2 clone F20F1 map... 56 2e-04
15dbj|AK221283.1| Arabidopsis thaliana mRNA for putative chromosom... 56 2e-04
16tpe|BN000098.1|BTA000098 TPA: TPA_inf: Bos taurus mRNA for struc... 56 2e-04
17gb|AF072713.1|AF072713 Bos taurus SMC3 protein (SMC3) mRNA, comp... 56 2e-04
18ref|XM_503989.1| Yarrowia lipolytica CLIB122, YALI0E15620g predi... 52 0.002
19emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 52 0.002
20emb|CR861241.1| Pongo pygmaeus mRNA; cDNA DKFZp459I103 (from clo... 48 0.039
21ref|NG_005084.1| Homo sapiens CSPG6 pseudogene (LOC550644) on ch... 48 0.039
22gb|AC019097.5| Homo sapiens BAC clone RP11-425I16 from 2, comple... 48 0.039
23emb|AL354715.10| Human DNA sequence from clone RP11-110G12 on ch... 46 0.15
24ref|XM_793479.1| PREDICTED: Strongylocentrotus purpuratus simila... 46 0.15
25emb|AJ299714.1|MAR299714 Microtus arvalis partial mRNA for putat... 46 0.15
26ref|NM_031583.1| Rattus norvegicus chondroitin sulfate proteogly... 46 0.15
27gb|U82626.1|RNU82626 Rattus norvegicus basement membrane-associa... 46 0.15
28gb|AF545591.1| Galdieria sulphuraria strain SAG 108.79 elongatio... 44 0.61
29gb|AC022351.3| Drosophila melanogaster clone BACR29G15, complete... 42 2.4
30gb|DQ213084.1| Taeniopygia guttata clone 0058P0010G02 autophagy ... 42 2.4
31gb|AC069008.6| Homo sapiens BAC clone RP11-815N20 from 7, comple... 42 2.4
32gb|BT023768.1| Drosophila melanogaster RE14758 full insert cDNA 42 2.4
33gb|AC182472.3| Pan troglodytes BAC clone CH251-394C9 from chromo... 42 2.4
34ref|NM_167525.1| Drosophila melanogaster Chromosome-associated p... 42 2.4
35ref|NM_078650.2| Drosophila melanogaster Chromosome-associated p... 42 2.4
36gb|AC011500.7| Homo sapiens chromosome 19 clone CTB-60E11, compl... 42 2.4
37gb|AE003502.4| Drosophila melanogaster chromosome X, section 54 ... 42 2.4
38gb|U30492.1|DMU30492 Drosophila melanogaster chromosome-associat... 42 2.4
39gb|AC117203.4| Mus musculus BAC clone RP23-251N4 from chromosome... 40 9.5
40ref|NM_133786.3| Mus musculus SMC4 structural maintenance of chr... 40 9.5
41gb|AC119211.8| Mus musculus chromosome 7, clone RP24-191C15, com... 40 9.5
42gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.5
43gb|AC161442.5| Mus musculus chromosome 5, clone RP23-384P12, com... 40 9.5
44ref|NM_001032626.1| Takifugu rubripes SMC3 protein (smc3), mRNA 40 9.5
45ref|XM_904099.2| PREDICTED: Mus musculus similar to SMC4 structu... 40 9.5
46gb|BC005507.1| Mus musculus SMC4 structural maintenance of chrom... 40 9.5
47gb|BC061481.1| Mus musculus SMC4 structural maintenance of chrom... 40 9.5
48emb|AL117203.1|CEY48C3A Caenorhabditis elegans YAC Y48C3A, compl... 40 9.5
49gb|AC122876.4| Mus musculus BAC clone RP23-113K14 from 3, comple... 40 9.5
50gb|AC112701.6| Mus musculus BAC clone RP23-171A11 from 13, compl... 40 9.5
51gb|AC119847.12| Mus musculus chromosome 3, clone RP23-46L5, comp... 40 9.5
52ref|XM_775598.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 9.5
53ref|XM_502000.1| Yarrowia lipolytica CLIB122, YALI0C19129g predi... 40 9.5
54emb|AL390879.20| Human DNA sequence from clone RP11-308D16 on ch... 40 9.5
55gb|AC164097.2| Mus musculus BAC clone RP23-141F18 from chromosom... 40 9.5
56emb|AJ534334.3|TRU534334 Takifugu rubripes mRNA for SMC3 protein 40 9.5
57emb|AJ534940.2|MMU534940 Mus musculus mRNA for SMC4 protein 40 9.5
58gb|AC099664.2| Homo sapiens chromosome 3 clone RP11-6B4, complet... 40 9.5
59dbj|AB159668.1| Nemalionopsis shawii chloroplast tufA gene for e... 40 9.5
60gb|AC004655.1| Homo sapiens Xp22-140-141 BAC GSHB-128G5 (Genome ... 40 9.5
61ref|XM_683028.1| PREDICTED: Danio rerio similar to chromosome ad... 40 9.5
62gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 9.5
63gb|AY275833.1| Homo sapiens polymerase (DNA directed), alpha (PO... 40 9.5
64gb|AC119193.9| Mus musculus chromosome 7, clone RP24-178L6, comp... 40 9.5
65dbj|AK049487.1| Mus musculus 7 days embryo whole body cDNA, RIKE... 40 9.5
66ref|NM_064413.4| Caenorhabditis elegans Member of AAA family bin... 40 9.5
67gb|BC025542.1| Mus musculus SMC4 structural maintenance of chrom... 40 9.5
68dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
69gb|AC154705.2| Mus musculus BAC clone RP23-131F11 from chromosom... 40 9.5
70gb|AF545594.1| Bangiopsis subsimplex elongation factor Tu (tufA)... 40 9.5
71dbj|AB019232.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 9.5
72gb|BC062939.1| Mus musculus SMC4 structural maintenance of chrom... 40 9.5
73gb|AF059715.1|AF059715 Caenorhabditis elegans cell survival CED-... 40 9.5
74gb|AY108788.1| Zea mays PCO064665 mRNA sequence 40 9.5
75gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.5
76gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complete genome 40 9.5
77emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 9.5
78gb|AC165159.2| Mus musculus BAC clone RP23-234N1 from chromosome... 40 9.5
79gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 9.5 
>emb|AJ000233.1|HVJ000233 Hordeum vulgare mRNA for expressed sequence tag
          Length = 443

 Score =  509 bits (257), Expect = e-141
 Identities = 267/269 (99%), Gaps = 1/269 (0%)
 Strand = Plus / Minus

                                                                       
Query: 426 cgttgtgcgtctggtcgtgctcgatgaagtccatggcctgctccttggacaccacgttga 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cgttgtgcgtctggtcgtgctcgatgaagtccatggcctgctccttggacaccacgttga 384

                                                                       
Query: 486 tgaagctcaccctgtt-cttgtgcgtcacgccatagatcttgtccgcgaccttcaggatc 544
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgaagctcaccctgtttcttgtgcgtcacgccatagatcttgtccgcgaccttcaggatc 324

                                                                       
Query: 545 tccggcctgaatgtggtggctatgaactgggtgtccgccatgtcagccagacgtcgaacc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 323 tccggcctgaatgtggtggctatgaactgggtgtccgccatgtcagccagaagtcgaacc 264

                                                                       
Query: 605 acgctcccgacagccgttctgtactgaggatccagagcagcatcaatctcatcaaagagg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acgctcccgacagccgttctgtactgaggatccagagcagcatcaatctcatcaaagagg 204

                                        
Query: 665 tagaacggagctgggtcacatcgttggat 693
           |||||||||||||||||||||||||||||
Sbjct: 203 tagaacggagctgggtcacatcgttggat 175
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>dbj|AK105135.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-A05, full
           insert sequence
          Length = 1101

 Score =  174 bits (88), Expect = 3e-40
 Identities = 223/268 (83%)
 Strand = Plus / Minus

                                                                       
Query: 417 ctcagctggcgttgtgcgtctggtcgtgctcgatgaagtccatggcctgctccttggaca 476
           ||||||| |||||||| |||||||| ||||| ||||||||||  || |||||||| ||||
Sbjct: 787 ctcagctagcgttgtgtgtctggtcatgctcaatgaagtccagagcttgctcctttgaca 728

                                                                       
Query: 477 ccacgttgatgaagctcaccctgttcttgtgcgtcacgccatagatcttgtccgcgacct 536
           |||| |||||| |||| |||||||||||||||||||| ||||||||||| || || || |
Sbjct: 727 ccacattgatgtagctaaccctgttcttgtgcgtcacaccatagatcttatcagcaactt 668

                                                                       
Query: 537 tcaggatctccggcctgaatgtggtggctatgaactgggtgtccgccatgtcagccagac 596
           |    || || || | |||||| || ||||| ||||| ||||| ||||||||||| ||||
Sbjct: 667 ttgcaatttctggtcggaatgtcgttgctataaactgagtgtcagccatgtcagctagac 608

                                                                       
Query: 597 gtcgaaccacgctcccgacagccgttctgtactgaggatccagagcagcatcaatctcat 656
           | || | ||   | |||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct: 607 ggcggatcatattgccgacagctgttctgtactgtggatccagagcagcatcgatctcat 548

                                       
Query: 657 caaagaggtagaacggagctgggtcaca 684
           |||| || ||||| || ||||| |||||
Sbjct: 547 caaacagatagaatggggctggatcaca 520
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>ref|XM_464028.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3618

 Score =  172 bits (87), Expect = 1e-39
 Identities = 222/267 (83%)
 Strand = Plus / Minus

                                                                        
Query: 418  tcagctggcgttgtgcgtctggtcgtgctcgatgaagtccatggcctgctccttggacac 477
            |||||| |||||||| |||||||| ||||| ||||||||||  || |||||||| |||||
Sbjct: 3618 tcagctagcgttgtgtgtctggtcatgctcaatgaagtccagagcttgctcctttgacac 3559

                                                                        
Query: 478  cacgttgatgaagctcaccctgttcttgtgcgtcacgccatagatcttgtccgcgacctt 537
            ||| |||||| |||| |||||||||||||||||||| ||||||||||| || || || ||
Sbjct: 3558 cacattgatgtagctaaccctgttcttgtgcgtcacaccatagatcttatcagcaacttt 3499

                                                                        
Query: 538  caggatctccggcctgaatgtggtggctatgaactgggtgtccgccatgtcagccagacg 597
                || || || | |||||| || ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 3498 tgcaatttctggtcggaatgtcgttgctataaactgagtgtcagccatgtcagctagacg 3439

                                                                        
Query: 598  tcgaaccacgctcccgacagccgttctgtactgaggatccagagcagcatcaatctcatc 657
             || | ||   | |||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 3438 gcggatcatattgccgacagctgttctgtactgtggatccagagcagcatcgatctcatc 3379

                                       
Query: 658  aaagaggtagaacggagctgggtcaca 684
            ||| || ||||| || ||||| |||||
Sbjct: 3378 aaacagatagaatggggctggatcaca 3352
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>emb|AJ535211.1|OSA535211 Oryza sativa mRNA for SMC3 protein
          Length = 3618

 Score =  172 bits (87), Expect = 1e-39
 Identities = 222/267 (83%)
 Strand = Plus / Minus

                                                                        
Query: 418  tcagctggcgttgtgcgtctggtcgtgctcgatgaagtccatggcctgctccttggacac 477
            |||||| |||||||| |||||||| ||||| ||||||||||  || |||||||| |||||
Sbjct: 3618 tcagctagcgttgtgtgtctggtcatgctcaatgaagtccagagcttgctcctttgacac 3559

                                                                        
Query: 478  cacgttgatgaagctcaccctgttcttgtgcgtcacgccatagatcttgtccgcgacctt 537
            ||| |||||| |||| |||||||||||||||||||| ||||||||||| || || || ||
Sbjct: 3558 cacattgatgtagctaaccctgttcttgtgcgtcacaccatagatcttatcagcaacttt 3499

                                                                        
Query: 538  caggatctccggcctgaatgtggtggctatgaactgggtgtccgccatgtcagccagacg 597
                || || || | |||||| || ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 3498 tgcaatttctggtcggaatgtcgttgctataaactgagtgtcagccatgtcagctagacg 3439

                                                                        
Query: 598  tcgaaccacgctcccgacagccgttctgtactgaggatccagagcagcatcaatctcatc 657
             || |  |  || |||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 3438 gcggatgatactgccgacagctgttctgtactgtggatccagagcagcatcgatctcatc 3379

                                       
Query: 658  aaagaggtagaacggagctgggtcaca 684
            ||| || ||||| || ||||| |||||
Sbjct: 3378 aaacagatagaatggggctggatcaca 3352
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>ref|XM_464029.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3672

 Score =  135 bits (68), Expect = 2e-28
 Identities = 212/260 (81%)
 Strand = Plus / Minus

                                                                        
Query: 434  gtctggtcgtgctcgatgaagtccatggcctgctccttggacaccacgttgatgaagctc 493
            |||||||| ||| | ||||| ||||  ||||||||||| |||||||| |||||| |||||
Sbjct: 3656 gtctggtcatgcccaatgaaatccagagcctgctcctttgacaccacattgatgtagctc 3597

                                                                        
Query: 494  accctgttcttgtgcgtcacgccatagatcttgtccgcgaccttcaggatctccggcctg 553
            |||||||||||||  ||||| |||||||| || || || || || |  || ||||| |||
Sbjct: 3596 accctgttcttgtatgtcacaccatagattttatcagcaacttttacaatttccggtctg 3537

                                                                        
Query: 554  aatgtggtggctatgaactgggtgtccgccatgtcagccagacgtcgaaccacgctcccg 613
            ||||| || ||||| || || ||||| |||||||| |  ||||| || | ||   | || 
Sbjct: 3536 aatgttgtcgctataaattgagtgtcagccatgtccgaaagacggcggatcatattgcca 3477

                                                                        
Query: 614  acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 673
            ||||| ||||||||||| | |||||||||||||||||||||||| || || |||||||||
Sbjct: 3476 acagcagttctgtactgtgtatccagagcagcatcaatctcatcgaaaagatagaacgga 3417

                                
Query: 674  gctgggtcacatcgttggat 693
            ||||| ||||| || |||||
Sbjct: 3416 gctggatcacaacgctggat 3397
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  121 bits (61), Expect = 3e-24
 Identities = 151/181 (83%)
 Strand = Plus / Plus

                                                                           
Query: 417     ctcagctggcgttgtgcgtctggtcgtgctcgatgaagtccatggcctgctccttggaca 476
               ||||||| |||||||| |||||||| ||||| ||||||||||  || |||||||| ||||
Sbjct: 1754860 ctcagctagcgttgtgtgtctggtcatgctcaatgaagtccagagcttgctcctttgaca 1754919

                                                                           
Query: 477     ccacgttgatgaagctcaccctgttcttgtgcgtcacgccatagatcttgtccgcgacct 536
               |||| |||||| |||| |||||||||||||||||||| ||||||||||| || || || |
Sbjct: 1754920 ccacattgatgtagctaaccctgttcttgtgcgtcacaccatagatcttatcagcaactt 1754979

                                                                           
Query: 537     tcaggatctccggcctgaatgtggtggctatgaactgggtgtccgccatgtcagccagac 596
               |    || || || | |||||| || ||||| ||||| ||||| ||||||||||| ||||
Sbjct: 1754980 ttgcaatttctggtcggaatgtcgttgctataaactgagtgtcagccatgtcagctagac 1755039

                
Query: 597     g 597
               |
Sbjct: 1755040 g 1755040



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                           
Query: 614     acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 673
               ||||| ||||||||||| | |||||||||||||||||||||||| || || |||||||||
Sbjct: 1766373 acagcagttctgtactgtgtatccagagcagcatcaatctcatcgaaaagatagaacgga 1766432

                                   
Query: 674     gctgggtcacatcgttggat 693
               ||||| ||||| || |||||
Sbjct: 1766433 gctggatcacaacgctggat 1766452



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 127/155 (81%)
 Strand = Plus / Plus

                                                                           
Query: 434     gtctggtcgtgctcgatgaagtccatggcctgctccttggacaccacgttgatgaagctc 493
               |||||||| ||| | ||||| ||||  ||||||||||| |||||||| |||||| |||||
Sbjct: 1766087 gtctggtcatgcccaatgaaatccagagcctgctcctttgacaccacattgatgtagctc 1766146

                                                                           
Query: 494     accctgttcttgtgcgtcacgccatagatcttgtccgcgaccttcaggatctccggcctg 553
               |||||||||||||  ||||| |||||||| || || || || || |  || ||||| |||
Sbjct: 1766147 accctgttcttgtatgtcacaccatagattttatcagcaacttttacaatttccggtctg 1766206

                                                  
Query: 554     aatgtggtggctatgaactgggtgtccgccatgtc 588
               ||||| || ||||| || || ||||| ||||||||
Sbjct: 1766207 aatgttgtcgctataaattgagtgtcagccatgtc 1766241



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                           
Query: 611     ccgacagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaac 670
               |||||||| ||||||||||| ||||||||||||||||| ||||||||||| || ||||| 
Sbjct: 1755188 ccgacagctgttctgtactgtggatccagagcagcatcgatctcatcaaacagatagaat 1755247

                             
Query: 671     ggagctgggtcaca 684
               || ||||| |||||
Sbjct: 1755248 ggggctggatcaca 1755261
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>dbj|AP004997.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0030G11
          Length = 143943

 Score =  121 bits (61), Expect = 3e-24
 Identities = 151/181 (83%)
 Strand = Plus / Plus

                                                                         
Query: 417   ctcagctggcgttgtgcgtctggtcgtgctcgatgaagtccatggcctgctccttggaca 476
             ||||||| |||||||| |||||||| ||||| ||||||||||  || |||||||| ||||
Sbjct: 72872 ctcagctagcgttgtgtgtctggtcatgctcaatgaagtccagagcttgctcctttgaca 72931

                                                                         
Query: 477   ccacgttgatgaagctcaccctgttcttgtgcgtcacgccatagatcttgtccgcgacct 536
             |||| |||||| |||| |||||||||||||||||||| ||||||||||| || || || |
Sbjct: 72932 ccacattgatgtagctaaccctgttcttgtgcgtcacaccatagatcttatcagcaactt 72991

                                                                         
Query: 537   tcaggatctccggcctgaatgtggtggctatgaactgggtgtccgccatgtcagccagac 596
             |    || || || | |||||| || ||||| ||||| ||||| ||||||||||| ||||
Sbjct: 72992 ttgcaatttctggtcggaatgtcgttgctataaactgagtgtcagccatgtcagctagac 73051

              
Query: 597   g 597
             |
Sbjct: 73052 g 73052



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                         
Query: 614   acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 673
             ||||| ||||||||||| | |||||||||||||||||||||||| || || |||||||||
Sbjct: 84385 acagcagttctgtactgtgtatccagagcagcatcaatctcatcgaaaagatagaacgga 84444

                                 
Query: 674   gctgggtcacatcgttggat 693
             ||||| ||||| || |||||
Sbjct: 84445 gctggatcacaacgctggat 84464



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 127/155 (81%)
 Strand = Plus / Plus

                                                                         
Query: 434   gtctggtcgtgctcgatgaagtccatggcctgctccttggacaccacgttgatgaagctc 493
             |||||||| ||| | ||||| ||||  ||||||||||| |||||||| |||||| |||||
Sbjct: 84099 gtctggtcatgcccaatgaaatccagagcctgctcctttgacaccacattgatgtagctc 84158

                                                                         
Query: 494   accctgttcttgtgcgtcacgccatagatcttgtccgcgaccttcaggatctccggcctg 553
             |||||||||||||  ||||| |||||||| || || || || || |  || ||||| |||
Sbjct: 84159 accctgttcttgtatgtcacaccatagattttatcagcaacttttacaatttccggtctg 84218

                                                
Query: 554   aatgtggtggctatgaactgggtgtccgccatgtc 588
             ||||| || ||||| || || ||||| ||||||||
Sbjct: 84219 aatgttgtcgctataaattgagtgtcagccatgtc 84253



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                         
Query: 611   ccgacagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaac 670
             |||||||| ||||||||||| ||||||||||||||||| ||||||||||| || ||||| 
Sbjct: 73200 ccgacagctgttctgtactgtggatccagagcagcatcgatctcatcaaacagatagaat 73259

                           
Query: 671   ggagctgggtcaca 684
             || ||||| |||||
Sbjct: 73260 ggggctggatcaca 73273
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>gb|AY104981.1| Zea mays PCO103085 mRNA sequence
          Length = 636

 Score =  119 bits (60), Expect = 1e-23
 Identities = 195/240 (81%)
 Strand = Plus / Minus

                                                                       
Query: 415 gcctcagctggcgttgtgcgtctggtcgtgctcgatgaagtccatggcctgctccttgga 474
           ||||||||| || |||| |||||| ||  ||||||||||||||| ||||| |||||||||
Sbjct: 251 gcctcagctagcattgtacgtctgatcacgctcgatgaagtccagggcctcctccttgga 192

                                                                       
Query: 475 caccacgttgatgaagctcaccctgttcttgtgcgtcacgccatagatcttgtccgcgac 534
           |||||||| ||||  ||||||||| ||||||||  ||||| |||| ||||| || || ||
Sbjct: 191 caccacgtcgatgttgctcaccctattcttgtgtctcacggcatatatcttatcagccac 132

                                                                       
Query: 535 cttcaggatctccggcctgaatgtggtggctatgaactgggtgtccgccatgtcagccag 594
            ||    ||||| |||| ||||||||| || |||||||| ||||| ||||||||||| ||
Sbjct: 131 tttagcaatctctggccggaatgtggtcgcaatgaactgagtgtcagccatgtcagctag 72

                                                                       
Query: 595 acgtcgaaccacgctcccgacagccgttctgtactgaggatccagagcagcatcaatctc 654
           ||| || | ||   | || || || |||| ||| || ||||||||||||||||| |||||
Sbjct: 71  acggcggatcatatttccaactgctgttcggtattgtggatccagagcagcatcgatctc 12
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>dbj|AP004799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0585B01
          Length = 133231

 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                        
Query: 614  acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 673
            ||||| ||||||||||| | |||||||||||||||||||||||| || || |||||||||
Sbjct: 3017 acagcagttctgtactgtgtatccagagcagcatcaatctcatcgaaaagatagaacgga 3076

                                
Query: 674  gctgggtcacatcgttggat 693
            ||||| ||||| || |||||
Sbjct: 3077 gctggatcacaacgctggat 3096



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 127/155 (81%)
 Strand = Plus / Plus

                                                                        
Query: 434  gtctggtcgtgctcgatgaagtccatggcctgctccttggacaccacgttgatgaagctc 493
            |||||||| ||| | ||||| ||||  ||||||||||| |||||||| |||||| |||||
Sbjct: 2731 gtctggtcatgcccaatgaaatccagagcctgctcctttgacaccacattgatgtagctc 2790

                                                                        
Query: 494  accctgttcttgtgcgtcacgccatagatcttgtccgcgaccttcaggatctccggcctg 553
            |||||||||||||  ||||| |||||||| || || || || || |  || ||||| |||
Sbjct: 2791 accctgttcttgtatgtcacaccatagattttatcagcaacttttacaatttccggtctg 2850

                                               
Query: 554  aatgtggtggctatgaactgggtgtccgccatgtc 588
            ||||| || ||||| || || ||||| ||||||||
Sbjct: 2851 aatgttgtcgctataaattgagtgtcagccatgtc 2885
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>ref|NM_128275.3| Arabidopsis thaliana TTN7 (TITAN7); ATP binding AT2G27170 (TTN7)
            mRNA, complete cds
          Length = 3777

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 614  acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 673
            ||||| |||| |||||| ||||| || || ||||||||||||||||| || ||||| || 
Sbjct: 3584 acagcggttcggtactgtggatcaagtgctgcatcaatctcatcaaaaagatagaatggt 3525

                                
Query: 674  gctgggtcacatcgttggat 693
            || || |||||||| |||||
Sbjct: 3524 gcaggatcacatcgctggat 3505
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>ref|NM_174295.1| Bos taurus chondroitin sulfate proteoglycan 6 (bamacan) (CSPG6), mRNA
          Length = 3657

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                        
Query: 614  acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 673
            |||||| |||||| ||||| |||||||||    |||||||||||||| | ||| || |||
Sbjct: 3473 acagcctttctgtgctgagcatccagagcctggtcaatctcatcaaacaagtaaaaagga 3414

                        
Query: 674  gctgggtcacat 685
            ||||||||||||
Sbjct: 3413 gctgggtcacat 3402
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>emb|AJ504805.2|ATH504805 Arabidopsis thaliana mRNA for SMC3 protein
          Length = 3618

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 614  acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 673
            ||||| |||| |||||| ||||| || || ||||||||||||||||| || ||||| || 
Sbjct: 3425 acagcggttcggtactgtggatcaagtgctgcatcaatctcatcaaaaagatagaatggt 3366

                                
Query: 674  gctgggtcacatcgttggat 693
            || || |||||||| |||||
Sbjct: 3365 gcaggatcacatcgctggat 3346
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>gb|AY525642.1| Arabidopsis thaliana SMC3 (SMC3) mRNA, complete cds
          Length = 3677

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 614  acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 673
            ||||| |||| |||||| ||||| || || ||||||||||||||||| || ||||| || 
Sbjct: 3460 acagcggttcggtactgtggatcaagtgctgcatcaatctcatcaaaaagatagaatggt 3401

                                
Query: 674  gctgggtcacatcgttggat 693
            || || |||||||| |||||
Sbjct: 3400 gcaggatcacatcgctggat 3381
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>gb|AC007154.4| Arabidopsis thaliana chromosome 2 clone F20F1 map B68, complete
             sequence
          Length = 20190

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                         
Query: 614   acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 673
             ||||| |||| |||||| ||||| || || ||||||||||||||||| || ||||| || 
Sbjct: 12657 acagcggttcggtactgtggatcaagtgctgcatcaatctcatcaaaaagatagaatggt 12716

                                 
Query: 674   gctgggtcacatcgttggat 693
             || || |||||||| |||||
Sbjct: 12717 gcaggatcacatcgctggat 12736
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>dbj|AK221283.1| Arabidopsis thaliana mRNA for putative chromosome associated protein,
            complete cds, clone: RAFL24-19-L04
          Length = 3977

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 614  acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 673
            ||||| |||| |||||| ||||| || || ||||||||||||||||| || ||||| || 
Sbjct: 3578 acagcggttcggtactgtggatcaagtgctgcatcaatctcatcaaaaagatagaatggt 3519

                                
Query: 674  gctgggtcacatcgttggat 693
            || || |||||||| |||||
Sbjct: 3518 gcaggatcacatcgctggat 3499
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>tpe|BN000098.1|BTA000098 TPA: TPA_inf: Bos taurus mRNA for structural maintenance of
            chromosomes protein 3 (smc3 gene)
          Length = 3654

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                        
Query: 614  acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 673
            |||||| |||||| ||||| |||||||||    |||||||||||||| | ||| || |||
Sbjct: 3470 acagcctttctgtgctgagcatccagagcctggtcaatctcatcaaacaagtaaaaagga 3411

                        
Query: 674  gctgggtcacat 685
            ||||||||||||
Sbjct: 3410 gctgggtcacat 3399
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>gb|AF072713.1|AF072713 Bos taurus SMC3 protein (SMC3) mRNA, complete cds
          Length = 3657

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                        
Query: 614  acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 673
            |||||| |||||| ||||| |||||||||    |||||||||||||| | ||| || |||
Sbjct: 3473 acagcctttctgtgctgagcatccagagcctggtcaatctcatcaaacaagtaaaaagga 3414

                        
Query: 674  gctgggtcacat 685
            ||||||||||||
Sbjct: 3413 gctgggtcacat 3402
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>ref|XM_503989.1| Yarrowia lipolytica CLIB122, YALI0E15620g predicted mRNA
          Length = 3663

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 634  atccagagcagcatcaatctcatcaa 659
            ||||||||||||||||||||||||||
Sbjct: 3474 atccagagcagcatcaatctcatcaa 3449
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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                         
Query: 634     atccagagcagcatcaatctcatcaa 659
               ||||||||||||||||||||||||||
Sbjct: 1868480 atccagagcagcatcaatctcatcaa 1868505
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>emb|CR861241.1| Pongo pygmaeus mRNA; cDNA DKFZp459I103 (from clone DKFZp459I103)
          Length = 4087

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 614  acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 673
            |||||| |||||| ||||| |||||||||    |||||||||||||| | ||| || |||
Sbjct: 3556 acagcctttctgtgctgagcatccagagcctggtcaatctcatcaaacaagtaaaatgga 3497

                        
Query: 674  gctgggtcacat 685
            || |||||||||
Sbjct: 3496 gccgggtcacat 3485
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>ref|NG_005084.1| Homo sapiens CSPG6 pseudogene (LOC550644) on chromosome 2
          Length = 1284

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                       
Query: 614 acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 673
           |||||| |||||| ||||| |||||||||    |||||||||||||| | ||| || |||
Sbjct: 651 acagcctttctgtgctgagcatccagagcctggtcaatctcatcaaacaagtaaaatgga 592

                       
Query: 674 gctgggtcacat 685
           || |||||||||
Sbjct: 591 gccgggtcacat 580
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>gb|AC019097.5| Homo sapiens BAC clone RP11-425I16 from 2, complete sequence
          Length = 186023

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                         
Query: 614   acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 673
             |||||| |||||| ||||| |||||||||    |||||||||||||| | ||| || |||
Sbjct: 26585 acagcctttctgtgctgagcatccagagcctggtcaatctcatcaaacaagtaaaatgga 26644

                         
Query: 674   gctgggtcacat 685
             || |||||||||
Sbjct: 26645 gccgggtcacat 26656
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>emb|AL354715.10| Human DNA sequence from clone RP11-110G12 on chromosome 13, complete
             sequence
          Length = 121019

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 187   taactaaatatacacagctacat 209
             |||||||||||||||||||||||
Sbjct: 89197 taactaaatatacacagctacat 89175
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>ref|XM_793479.1| PREDICTED: Strongylocentrotus purpuratus similar to Structural
            maintenance of chromosome 3 (Chondroitin sulfate
            proteoglycan 6) (Chromosome-associated polypeptide)
            (hCAP) (Bamacan) (Basement membrane-associated
            chondroitin proteoglycan) (LOC594026), mRNA
          Length = 3797

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 650  atctcatcaaagaggtagaacggagctgggtcaca 684
            |||||||||||||||||||| || || ||||||||
Sbjct: 3332 atctcatcaaagaggtagaaaggggcggggtcaca 3298
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>emb|AJ299714.1|MAR299714 Microtus arvalis partial mRNA for putative SMC3 protein (smc3 gene)
          Length = 223

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 647 tcaatctcatcaaagaggtagaacggagctgggtcacat 685
           |||||||||||||| | ||| |||||||| |||||||||
Sbjct: 173 tcaatctcatcaaacaagtaaaacggagcagggtcacat 135
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>ref|NM_031583.1| Rattus norvegicus chondroitin sulfate proteoglycan 6 (Cspg6), mRNA
          Length = 4104

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 650  atctcatcaaagaggtagaacggagctgggtcaca 684
            ||||||||||| |||||||| ||||| ||||||||
Sbjct: 3523 atctcatcaaacaggtagaaaggagcagggtcaca 3489
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>gb|U82626.1|RNU82626 Rattus norvegicus basement membrane-associated chondroitin
            proteoglycan Bamacan mRNA, complete cds
          Length = 4104

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 650  atctcatcaaagaggtagaacggagctgggtcaca 684
            ||||||||||| |||||||| ||||| ||||||||
Sbjct: 3523 atctcatcaaacaggtagaaaggagcagggtcaca 3489
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>gb|AF545591.1| Galdieria sulphuraria strain SAG 108.79 elongation factor Tu (tufA)
           gene, partial cds; chloroplast gene for chloroplast
           product
          Length = 975

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 639 gagcagcatcaatctcatcaaa 660
           ||||||||||||||||||||||
Sbjct: 91  gagcagcatcaatctcatcaaa 70
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>gb|AC022351.3| Drosophila melanogaster clone BACR29G15, complete sequence
          Length = 179396

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 650    atctcatcaaagaggtagaacggagctgg 678
              ||||||||||| |||||||| ||||||||
Sbjct: 105894 atctcatcaaataggtagaagggagctgg 105922
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>gb|DQ213084.1| Taeniopygia guttata clone 0058P0010G02 autophagy 12-like mRNA,
           complete sequence
          Length = 890

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 57  ttttgcagtaatgcagtacaa 77
           |||||||||||||||||||||
Sbjct: 470 ttttgcagtaatgcagtacaa 450
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>gb|AC069008.6| Homo sapiens BAC clone RP11-815N20 from 7, complete sequence
          Length = 90252

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 556  tgtggtggctatgaactgggt 576
            |||||||||||||||||||||
Sbjct: 9323 tgtggtggctatgaactgggt 9343
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>gb|BT023768.1| Drosophila melanogaster RE14758 full insert cDNA
          Length = 4020

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 650  atctcatcaaagaggtagaacggagctgg 678
            ||||||||||| |||||||| ||||||||
Sbjct: 3446 atctcatcaaataggtagaagggagctgg 3418
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>gb|AC182472.3| Pan troglodytes BAC clone CH251-394C9 from chromosome 19, complete
              sequence
          Length = 165954

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 188    aactaaatatacacagctacattaa 212
              |||| ||||||||||||||||||||
Sbjct: 102929 aactgaatatacacagctacattaa 102953
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>ref|NM_167525.1| Drosophila melanogaster Chromosome-associated protein CG9802-RB,
            transcript variant B (Cap), mRNA
          Length = 4052

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 650  atctcatcaaagaggtagaacggagctgg 678
            ||||||||||| |||||||| ||||||||
Sbjct: 3494 atctcatcaaataggtagaagggagctgg 3466
to top
>ref|NM_078650.2| Drosophila melanogaster Chromosome-associated protein CG9802-RA,
            transcript variant A (Cap), mRNA
          Length = 4004

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 650  atctcatcaaagaggtagaacggagctgg 678
            ||||||||||| |||||||| ||||||||
Sbjct: 3446 atctcatcaaataggtagaagggagctgg 3418
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>gb|AC011500.7| Homo sapiens chromosome 19 clone CTB-60E11, complete sequence
          Length = 200430

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 188    aactaaatatacacagctacattaa 212
              |||| ||||||||||||||||||||
Sbjct: 134059 aactgaatatacacagctacattaa 134083
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>gb|AE003502.4| Drosophila melanogaster chromosome X, section 54 of 74 of the complete
              sequence
          Length = 304712

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 650    atctcatcaaagaggtagaacggagctgg 678
              ||||||||||| |||||||| ||||||||
Sbjct: 256827 atctcatcaaataggtagaagggagctgg 256855
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>gb|U30492.1|DMU30492 Drosophila melanogaster chromosome-associated protein (cap) mRNA,
            complete cds
          Length = 4711

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 650  atctcatcaaagaggtagaacggagctgg 678
            ||||||||||| |||||||| ||||||||
Sbjct: 4024 atctcatcaaataggtagaagggagctgg 3996
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>gb|AC117203.4| Mus musculus BAC clone RP23-251N4 from chromosome 10, complete sequence
          Length = 231532

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    cttaaataagttttagcaat 144
              ||||||||||||||||||||
Sbjct: 123830 cttaaataagttttagcaat 123849
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>ref|NM_133786.3| Mus musculus SMC4 structural maintenance of chromosomes 4-like 1
            (yeast) (Smc4l1), mRNA
          Length = 4101

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 634  atccagagcagcatcaatctcatc 657
            ||||||||| ||||||||||||||
Sbjct: 3796 atccagagctgcatcaatctcatc 3773
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>gb|AC119211.8| Mus musculus chromosome 7, clone RP24-191C15, complete sequence
          Length = 172286

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 650    atctcatcaaagaggtagaacggagctgggtcacat 685
              ||||||||||| ||||| || ||||| |||||||||
Sbjct: 100242 atctcatcaaacaggtaaaaaggagcggggtcacat 100277
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>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0068G15, complete sequence
          Length = 146175

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 439   gtcgtgctcgatgaagtcca 458
             ||||||||||||||||||||
Sbjct: 62082 gtcgtgctcgatgaagtcca 62101
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>gb|AC161442.5| Mus musculus chromosome 5, clone RP23-384P12, complete sequence
          Length = 174557

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 555   atgtggtggctatgaactgggtgt 578
             |||||||||||||||| |||||||
Sbjct: 48820 atgtggtggctatgaagtgggtgt 48843
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>ref|NM_001032626.1| Takifugu rubripes SMC3 protein (smc3), mRNA
          Length = 3654

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 650  atctcatcaaagaggtagaacggagctgggtcacat 685
            ||||||||||| ||||| || ||||| |||||||||
Sbjct: 3434 atctcatcaaacaggtaaaagggagccgggtcacat 3399
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>ref|XM_904099.2| PREDICTED: Mus musculus similar to SMC4 structural maintenance of
           chromosomes 4-like 1 (LOC630556), mRNA
          Length = 850

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 634 atccagagcagcatcaatctcatc 657
           ||||||||| ||||||||||||||
Sbjct: 558 atccagagctgcatcaatctcatc 535
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>gb|BC005507.1| Mus musculus SMC4 structural maintenance of chromosomes 4-like 1
           (yeast), mRNA (cDNA clone IMAGE:3491533), partial cds
          Length = 665

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 634 atccagagcagcatcaatctcatc 657
           ||||||||| ||||||||||||||
Sbjct: 366 atccagagctgcatcaatctcatc 343
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>gb|BC061481.1| Mus musculus SMC4 structural maintenance of chromosomes 4-like 1
            (yeast), mRNA (cDNA clone MGC:70057 IMAGE:6512832),
            complete cds
          Length = 4097

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 634  atccagagcagcatcaatctcatc 657
            ||||||||| ||||||||||||||
Sbjct: 3771 atccagagctgcatcaatctcatc 3748
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>emb|AL117203.1|CEY48C3A Caenorhabditis elegans YAC Y48C3A, complete sequence
          Length = 165027

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 643   agcatcaatctcatcaaaga 662
             ||||||||||||||||||||
Sbjct: 58447 agcatcaatctcatcaaaga 58466
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>gb|AC122876.4| Mus musculus BAC clone RP23-113K14 from 3, complete sequence
          Length = 190123

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 634    atccagagcagcatcaatctcatc 657
              ||||||||| ||||||||||||||
Sbjct: 168721 atccagagctgcatcaatctcatc 168698
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>gb|AC112701.6| Mus musculus BAC clone RP23-171A11 from 13, complete sequence
          Length = 184506

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   gctacaagaaacaaacagag 309
             ||||||||||||||||||||
Sbjct: 96314 gctacaagaaacaaacagag 96333
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>gb|AC119847.12| Mus musculus chromosome 3, clone RP23-46L5, complete sequence
          Length = 227081

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 634   atccagagcagcatcaatctcatc 657
             ||||||||| ||||||||||||||
Sbjct: 43728 atccagagctgcatcaatctcatc 43705
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>ref|XM_775598.1| PREDICTED: Strongylocentrotus purpuratus similar to chondroitin
           sulfate proteoglycan 6 (LOC575183), mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 650 atctcatcaaagaggtagaacggagctgggtcacat 685
           |||||||| ||||||||||| || || |||||||||
Sbjct: 146 atctcatcgaagaggtagaaaggggcggggtcacat 111
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>ref|XM_502000.1| Yarrowia lipolytica CLIB122, YALI0C19129g predicted mRNA
          Length = 4821

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 635  tccagagcagcatcaatctc 654
            ||||||||||||||||||||
Sbjct: 4403 tccagagcagcatcaatctc 4384
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>emb|AL390879.20| Human DNA sequence from clone RP11-308D16 on chromosome Xq25-27.1
             Contains the 3' end of a novel gene, a serine/arginine
             repetitive matrix 1 (SRRM1) pseudogene (LOC347480), the
             GPR101 gene for G protein-coupled receptor 101 and four
             CpG islands, complete sequence
          Length = 172280

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   actcaaaatgtaaagaggaa 379
             ||||||||||||||||||||
Sbjct: 24487 actcaaaatgtaaagaggaa 24468
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>gb|AC164097.2| Mus musculus BAC clone RP23-141F18 from chromosome 16, complete sequence
          Length = 217725

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 293    acaagaaacaaacagagatg 312
              ||||||||||||||||||||
Sbjct: 197460 acaagaaacaaacagagatg 197441
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>emb|AJ534334.3|TRU534334 Takifugu rubripes mRNA for SMC3 protein
          Length = 3654

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 650  atctcatcaaagaggtagaacggagctgggtcacat 685
            ||||||||||| ||||| || ||||| |||||||||
Sbjct: 3434 atctcatcaaacaggtaaaagggagccgggtcacat 3399
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>emb|AJ534940.2|MMU534940 Mus musculus mRNA for SMC4 protein
          Length = 3861

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 634  atccagagcagcatcaatctcatc 657
            ||||||||| ||||||||||||||
Sbjct: 3672 atccagagctgcatcaatctcatc 3649
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>gb|AC099664.2| Homo sapiens chromosome 3 clone RP11-6B4, complete sequence
          Length = 157223

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 354    aaggtaactcaaaatgtaaa 373
              ||||||||||||||||||||
Sbjct: 116782 aaggtaactcaaaatgtaaa 116763
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>dbj|AB159668.1| Nemalionopsis shawii chloroplast tufA gene for elongation factor
           TU, partial cds
          Length = 1140

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 641 gcagcatcaatctcatcaaa 660
           ||||||||||||||||||||
Sbjct: 135 gcagcatcaatctcatcaaa 116
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>gb|AC004655.1| Homo sapiens Xp22-140-141 BAC GSHB-128G5 (Genome Systems Human BAC
              library) complete sequence
          Length = 134929

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    aaacatcttgctacaagaaa 300
              ||||||||||||||||||||
Sbjct: 115115 aaacatcttgctacaagaaa 115096
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>ref|XM_683028.1| PREDICTED: Danio rerio similar to chromosome adhesion protein
            SMC1-like (LOC559665), mRNA
          Length = 3471

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 634  atccagagcagcatcaatctcatc 657
            ||||| ||||||||||||||||||
Sbjct: 3261 atccaaagcagcatcaatctcatc 3238
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 523     cttgtccgcgaccttcagga 542
               ||||||||||||||||||||
Sbjct: 2032998 cttgtccgcgaccttcagga 2032979
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>gb|AY275833.1| Homo sapiens polymerase (DNA directed), alpha (POLA) gene, complete cds
          Length = 304837

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   aaacatcttgctacaagaaa 300
             ||||||||||||||||||||
Sbjct: 18479 aaacatcttgctacaagaaa 18460
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>gb|AC119193.9| Mus musculus chromosome 7, clone RP24-178L6, complete sequence
          Length = 162310

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 650   atctcatcaaagaggtagaacggagctgggtcacat 685
             ||||||||||| ||||| || ||||| |||||||||
Sbjct: 20838 atctcatcaaacaggtaaaaaggagcggggtcacat 20873
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>dbj|AK049487.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:C430016J18 product:XCAP-C/SMC4
           HOMOLOG GLUON homolog [Drosophila melanogaster], full
           insert sequence
          Length = 1363

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 634 atccagagcagcatcaatctcatc 657
           ||||||||| ||||||||||||||
Sbjct: 827 atccagagctgcatcaatctcatc 804
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>ref|NM_064413.4| Caenorhabditis elegans Member of AAA family binding CED-4 family
            member (mac-1) (mac-1) mRNA, complete cds
          Length = 2559

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 643  agcatcaatctcatcaaaga 662
            ||||||||||||||||||||
Sbjct: 1916 agcatcaatctcatcaaaga 1897
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>gb|BC025542.1| Mus musculus SMC4 structural maintenance of chromosomes 4-like 1
           (yeast), mRNA (cDNA clone IMAGE:5253686), with apparent
           retained intron
          Length = 767

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 634 atccagagcagcatcaatctcatc 657
           ||||||||| ||||||||||||||
Sbjct: 468 atccagagctgcatcaatctcatc 445
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 439     gtcgtgctcgatgaagtcca 458
               ||||||||||||||||||||
Sbjct: 1844252 gtcgtgctcgatgaagtcca 1844271
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>gb|AC154705.2| Mus musculus BAC clone RP23-131F11 from chromosome 16, complete sequence
          Length = 177886

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    acaagaaacaaacagagatg 312
              ||||||||||||||||||||
Sbjct: 130620 acaagaaacaaacagagatg 130639
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>gb|AF545594.1| Bangiopsis subsimplex elongation factor Tu (tufA) gene, partial
           cds; chloroplast gene for chloroplast product
          Length = 975

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 641 gcagcatcaatctcatcaaa 660
           ||||||||||||||||||||
Sbjct: 89  gcagcatcaatctcatcaaa 70
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>dbj|AB019232.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MIL23
          Length = 80818

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     acccacataactcttatcta 25
             ||||||||||||||||||||
Sbjct: 16283 acccacataactcttatcta 16264
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>gb|BC062939.1| Mus musculus SMC4 structural maintenance of chromosomes 4-like 1
            (yeast), mRNA (cDNA clone MGC:86128 IMAGE:6841276),
            complete cds
          Length = 4101

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 634  atccagagcagcatcaatctcatc 657
            ||||||||| ||||||||||||||
Sbjct: 3796 atccagagctgcatcaatctcatc 3773
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>gb|AF059715.1|AF059715 Caenorhabditis elegans cell survival CED-4-interacting protein MAC-1
            mRNA, complete cds
          Length = 2442

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 643  agcatcaatctcatcaaaga 662
            ||||||||||||||||||||
Sbjct: 1914 agcatcaatctcatcaaaga 1895
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>gb|AY108788.1| Zea mays PCO064665 mRNA sequence
          Length = 824

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 635 tccagagcagcatcaatctcatca 658
           |||| |||||||||||||||||||
Sbjct: 570 tccacagcagcatcaatctcatca 547
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 439     gtcgtgctcgatgaagtcca 458
               ||||||||||||||||||||
Sbjct: 1841973 gtcgtgctcgatgaagtcca 1841992
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>gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complete genome
          Length = 191028

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 641   gcagcatcaatctcatcaaa 660
             ||||||||||||||||||||
Sbjct: 91947 gcagcatcaatctcatcaaa 91966
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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 635     tccagagcagcatcaatctc 654
               ||||||||||||||||||||
Sbjct: 2615050 tccagagcagcatcaatctc 2615031
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>gb|AC165159.2| Mus musculus BAC clone RP23-234N1 from chromosome 13, complete sequence
          Length = 215158

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 290    gctacaagaaacaaacagag 309
              ||||||||||||||||||||
Sbjct: 202895 gctacaagaaacaaacagag 202876
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 364     aaaatgtaaagaggaacaac 383
               ||||||||||||||||||||
Sbjct: 1033648 aaaatgtaaagaggaacaac 1033629


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,508,619
Number of Sequences: 3902068
Number of extensions: 5508619
Number of successful extensions: 102591
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 102254
Number of HSP's gapped (non-prelim): 336
length of query: 693
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 670
effective length of database: 17,143,297,704
effective search space: 11486009461680
effective search space used: 11486009461680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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