ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd19a09 |
|---|---|
| Clone Library Name | barley_pub |
>BT3L4_MOUSE (Q9CQH7) Transcription factor BTF3 homolog 4 (Basic transcription| factor 3-like 4) Length = 158 Score = 108 bits (269), Expect = 2e-23 Identities = 53/92 (57%), Positives = 72/92 (78%), Gaps = 1/92 (1%) Frame = -2 Query: 586 TTDDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VVIQFLNPKVQASIGANTWVVSGTPQTK 410 T DDK+LQS+LK++ VN I GIEEVN+ KDD VI F NPKVQAS+ ANT+ ++G + K Sbjct: 33 TADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAK 92 Query: 409 KLQDLLPSIINQLGPDNLDNLRRLAEQFQKQV 314 + ++LP I++QLG D+L +LR+LAEQF +QV Sbjct: 93 PITEMLPGILSQLGADSLTSLRKLAEQFPRQV 124
>BT3L4_HUMAN (Q96K17) Transcription factor BTF3 homolog 4 (Basic transcription| factor 3-like 4) Length = 158 Score = 108 bits (269), Expect = 2e-23 Identities = 53/92 (57%), Positives = 72/92 (78%), Gaps = 1/92 (1%) Frame = -2 Query: 586 TTDDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VVIQFLNPKVQASIGANTWVVSGTPQTK 410 T DDK+LQS+LK++ VN I GIEEVN+ KDD VI F NPKVQAS+ ANT+ ++G + K Sbjct: 33 TADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAK 92 Query: 409 KLQDLLPSIINQLGPDNLDNLRRLAEQFQKQV 314 + ++LP I++QLG D+L +LR+LAEQF +QV Sbjct: 93 PITEMLPGILSQLGADSLTSLRKLAEQFPRQV 124
>BTF3_MOUSE (Q64152) Transcription factor BTF3 (RNA polymerase B transcription| factor 3) Length = 204 Score = 107 bits (266), Expect = 3e-23 Identities = 54/91 (59%), Positives = 71/91 (78%), Gaps = 1/91 (1%) Frame = -2 Query: 586 TTDDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VVIQFLNPKVQASIGANTWVVSGTPQTK 410 T DDK+LQ +LK++GVN I GIEEVN+F + VI F NPKVQAS+ ANT+ ++G +TK Sbjct: 80 TADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETK 139 Query: 409 KLQDLLPSIINQLGPDNLDNLRRLAEQFQKQ 317 +L ++LPSI+NQLG D+L +LRRLAE KQ Sbjct: 140 QLTEMLPSILNQLGADSLTSLRRLAEALPKQ 170
>BTF3_HUMAN (P20290) Transcription factor BTF3 (RNA polymerase B transcription| factor 3) Length = 206 Score = 107 bits (266), Expect = 3e-23 Identities = 54/91 (59%), Positives = 71/91 (78%), Gaps = 1/91 (1%) Frame = -2 Query: 586 TTDDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VVIQFLNPKVQASIGANTWVVSGTPQTK 410 T DDK+LQ +LK++GVN I GIEEVN+F + VI F NPKVQAS+ ANT+ ++G +TK Sbjct: 82 TADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETK 141 Query: 409 KLQDLLPSIINQLGPDNLDNLRRLAEQFQKQ 317 +L ++LPSI+NQLG D+L +LRRLAE KQ Sbjct: 142 QLTEMLPSILNQLGADSLTSLRRLAEALPKQ 172
>BTF3_CAEEL (Q18885) Transcription factor BTF3 homolog (Inhibitor of cell death| 1) Length = 161 Score = 99.8 bits (247), Expect = 5e-21 Identities = 49/91 (53%), Positives = 67/91 (73%), Gaps = 1/91 (1%) Frame = -2 Query: 580 DDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VVIQFLNPKVQASIGANTWVVSGTPQTKKL 404 DDK+LQS LK++ V IPGIEEVN+ KDD VI F NPKVQ S+ ANT+ V+G+ K++ Sbjct: 42 DDKKLQSNLKKLSVTNIPGIEEVNMIKDDGTVIHFNNPKVQTSVPANTFSVTGSADNKQI 101 Query: 403 QDLLPSIINQLGPDNLDNLRRLAEQFQKQVP 311 ++LP I+NQLGP++L +L++LA K P Sbjct: 102 TEMLPGILNQLGPESLTHLKKLANNVTKLGP 132
>BT3L3_HUMAN (Q13892) Transcription factor BTF3 homolog 3 (Basic transcription| factor 3-like 3) Length = 214 Score = 93.2 bits (230), Expect = 5e-19 Identities = 46/91 (50%), Positives = 67/91 (73%), Gaps = 1/91 (1%) Frame = -2 Query: 586 TTDDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VVIQFLNPKVQASIGANTWVVSGTPQTK 410 T DDK+LQ +LK++ VN I GIE+VN+F + VI F NPK QAS+ NT+ ++G + K Sbjct: 68 TADDKKLQFSLKKLQVNNISGIEKVNMFTNQGTVIHFNNPKFQASLAVNTFTITGHAEAK 127 Query: 409 KLQDLLPSIINQLGPDNLDNLRRLAEQFQKQ 317 ++ ++LPS+++QLG D+L +LRRLAE KQ Sbjct: 128 QVTEMLPSVLSQLGADSLTSLRRLAEVLPKQ 158
>BTF3_SCHPO (Q92371) Transcription factor BTF3 homolog| Length = 151 Score = 76.6 bits (187), Expect = 5e-14 Identities = 37/90 (41%), Positives = 59/90 (65%), Gaps = 1/90 (1%) Frame = -2 Query: 589 TTTDDKRLQSTLKRVGVNTIPGIEEVNIFKDDV-VIQFLNPKVQASIGANTWVVSGTPQT 413 + DDK++Q LK++ + + GI+EVN+FK+D VI F P V +S+ T + G + Sbjct: 34 SAADDKKVQGALKKLNMQNLAGIQEVNMFKEDGGVINFRAPTVHSSLPNETTAIYGKAEE 93 Query: 412 KKLQDLLPSIINQLGPDNLDNLRRLAEQFQ 323 K L ++LP I+N LGP++L LR++AEQ + Sbjct: 94 KTLSEILPGILNNLGPESLTALRQMAEQLK 123
>BT3L1_HUMAN (Q13890) Transcription factor BTF3 homolog 1 (Basic transcription| factor 3-like 1) Length = 111 Score = 75.9 bits (185), Expect = 8e-14 Identities = 38/70 (54%), Positives = 53/70 (75%), Gaps = 1/70 (1%) Frame = -2 Query: 589 TTTDDKRLQSTLKRVGVNTIPGIEEVNIF-KDDVVIQFLNPKVQASIGANTWVVSGTPQT 413 TT +DK+ Q +LK++GVN IPGIEEVN+F VI F NP+VQAS+ ANT+ ++G +T Sbjct: 33 TTAEDKKFQFSLKKLGVNNIPGIEEVNMFTHQGTVIHFNNPEVQASLAANTFTMTGHAET 92 Query: 412 KKLQDLLPSI 383 K+L ++L SI Sbjct: 93 KQLTEMLLSI 102
>EGD1_YEAST (Q02642) BTF3 homolog EGD1 (GAL4 DNA-binding enhancer protein 1)| Length = 157 Score = 75.9 bits (185), Expect = 8e-14 Identities = 48/123 (39%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Frame = -2 Query: 580 DDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VVIQFLNPKVQASIGANTWVVSGTPQTKKL 404 DD +LQS L ++ TI + E N FKDD V+ F VQ + NT V G PQ K L Sbjct: 40 DDTKLQSQLAKLHAVTIDNVAEANFFKDDGKVMHFNKVGVQVAAQHNTSVFYGLPQEKNL 99 Query: 403 QDLLPSIINQLGPDNLDNLRRLAEQFQKQVPXXXXXXXXXXXXXXXXXXXXXDVPELVPG 224 QDL P II+QLGP+ + L +LA Q +K +PELV G Sbjct: 100 QDLFPGIISQLGPEAIQALSQLAAQMEKH----------EAKAPADAEKKDEAIPELVEG 149 Query: 223 ETF 215 +TF Sbjct: 150 QTF 152
>BTT1_YEAST (P40314) BTF3 homolog BTT1| Length = 149 Score = 48.5 bits (114), Expect = 1e-05 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Frame = -2 Query: 580 DDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VVIQFLNPKVQASIGANTWVVSGTPQTKKL 404 D+ +LQ+ L ++ TI + E N FK + V+ F + VQ + N ++ G P+ L Sbjct: 40 DNTKLQAELHKLHPMTIENVAEANFFKKNGKVLHFNSAVVQIAPQCNLTMIHGQPKENTL 99 Query: 403 QDLLPSIINQLGPDNLDNLRRLAEQFQKQ 317 L PS+ +QLG L+ L LA + + Sbjct: 100 NGLYPSVASQLGSQELEYLTGLAHNLENE 128
>KAD2_SYNY3 (P72641) Probable adenylate kinase 2 (EC 2.7.4.3) (ATP-AMP| transphosphorylase 2) Length = 181 Score = 34.7 bits (78), Expect = 0.21 Identities = 14/60 (23%), Positives = 31/60 (51%) Frame = -2 Query: 547 VGVNTIPGIEEVNIFKDDVVIQFLNPKVQASIGANTWVVSGTPQTKKLQDLLPSIINQLG 368 +G+ P +E ++ D ++I+F+ ++ G W++ G P+T + L ++ LG Sbjct: 45 LGIKAKPYVERGDLLPDPMMIEFIQQRLVQEDGGQGWILEGYPRTAFQAEELDFLLEDLG 104
>ERG27_KLULA (Q6CJC2) 3-keto-steroid reductase (EC 1.1.1.270)| Length = 346 Score = 32.3 bits (72), Expect = 1.1 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 7/77 (9%) Frame = -2 Query: 556 LKRVGVNTIPG---IEEVNIFKDDVVIQFLNPKVQASIGANTWV--VSGTPQTKKLQD-- 398 ++RVGV + G + + N+F +IQ L P +QA G WV + P+ LQD Sbjct: 134 IQRVGVKSKDGMGLVFQANVFGPYYLIQKLLPLLQAGQGTVVWVSSIMSAPKYLSLQDIQ 193 Query: 397 LLPSIINQLGPDNLDNL 347 LL S ++ G L +L Sbjct: 194 LLESDVSYEGSKRLVDL 210
>POL_BLVJ (P03361) Pol polyprotein [Contains: Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 852 Score = 30.8 bits (68), Expect = 3.1 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 13/76 (17%) Frame = -2 Query: 520 EEVNIFKDDVVIQFLNP----KVQASIGANTWVVSGTPQTKKLQDLL---------PSII 380 E++ ++ +Q +P ++QA +G WV GTP T++ LL P I Sbjct: 214 EQIVTYQSLPTLQISSPISLHQLQAVLGDLQWVSRGTPTTRRPLQLLYSSLKRHHDPRAI 273 Query: 379 NQLGPDNLDNLRRLAE 332 QL P+ L + L + Sbjct: 274 IQLSPEQLQGIAELRQ 289
>KAD2_ANASP (Q8Z0M3) Probable adenylate kinase 2 (EC 2.7.4.3) (ATP-AMP| transphosphorylase 2) Length = 184 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/65 (23%), Positives = 36/65 (55%) Frame = -2 Query: 562 STLKRVGVNTIPGIEEVNIFKDDVVIQFLNPKVQASIGANTWVVSGTPQTKKLQDLLPSI 383 S L +G + P + + + D+++I+ + +++ S + WV+ G P+T + L + Sbjct: 40 SHLSELGRHAQPYMIKGELVPDEMIIELIRLRLKKSDVIDGWVLEGYPRTAFQAEELDFL 99 Query: 382 INQLG 368 +++LG Sbjct: 100 LDELG 104
>CITG_KLEPN (P45414) 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase| (EC 2.7.8.25) (2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase) Length = 302 Score = 29.6 bits (65), Expect = 6.8 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = -2 Query: 565 QSTLKRVGVNTIPGIEEVNIFKDDVVIQFLNPKVQASIGANTWVVSGTP 419 Q L + GV G+E + F D+++ + L+P A + A TW +S P Sbjct: 247 QRLLWQGGVLADGGLEALRQFDDELIARHLSPGGSADLLAVTWFLSAFP 295
>EST1_YEAST (P17214) Telomere elongation protein EST1 (EC 2.7.7.-) (Ever| shorter telomeres protein 1) Length = 699 Score = 29.3 bits (64), Expect = 8.9 Identities = 15/48 (31%), Positives = 26/48 (54%) Frame = +3 Query: 414 VCGVPLTTHVLAPIEACTLGFRN*ITTSSLKMLTSSIPGMVFTPTLFR 557 + G P T VL+P E C L R+ I S +K L + G+++ + ++ Sbjct: 526 IIGCPTLTKVLSPKEECVLRIRS-IIFSGMKFLEKNDTGVIWNASKYK 572 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,437,578 Number of Sequences: 219361 Number of extensions: 1278128 Number of successful extensions: 3649 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3569 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3639 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
