>RTN4R_HUMAN (Q9BZR6) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 22/62 (35%), Positives = 31/62 (50%)
 Frame = +1

Query: 295 EGVPLE*VTLPDPVTRIF*HWKRSLPVPVAAIHGCR*FISCIWLWWPSLAHVDPFSFTCF 474
           +G+    V +P    RIF H  R   VP A+   CR  ++ +WL    LA +D  +FT  
Sbjct: 46  QGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGL 104

Query: 475 AL 480
           AL
Sbjct: 105 AL 106

>RTN4R_MOUSE (Q99PI8) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +1

Query: 322 LPDPVTRIF*HWKRSLPVPVAAIHGCR*FISCIWLWWPSLAHVDPFSFTCFAL 480
           +P    RIF H  R   VP A+   CR  ++ +WL   +LA +D  +FT   L
Sbjct: 55  IPASSQRIFLHGNRISHVPAASFQSCR-NLTILWLHSNALARIDAAAFTGLTL 106

>ZFYV9_HUMAN (O95405) Zinc finger FYVE domain-containing protein 9 (Mothers|
           against decapentaplegic homolog-interacting protein)
           (Madh-interacting protein) (Smad anchor for receptor
           activation) (Receptor activation anchor) (hSARA) (Novel
           serine protease)
          Length = 1425

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 23/60 (38%), Positives = 30/60 (50%)
 Frame = -2

Query: 567 EQRRVITGQGIVPNGVPSGSSYPRRNNTCKSETGEAERIDVSQAGPPKPYTGNKLPATVD 388
           EQRRV    GI+PNG  + ++    N T  + T     + VS   P KP T + LPA  D
Sbjct: 824 EQRRVWFADGILPNGEVADAAKLTMNGTSSAGT-----LAVSH-DPVKPVTTSPLPAETD 877

>RAS2_YEAST (P01120) Ras-like protein 2 precursor|
          Length = 321

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 24/136 (17%)
 Frame = -2

Query: 711 DNTQKPRRDTASVGANRVPQGA------AVARPGKVVGSALRY---------------GN 595
           DN+++  +DT   GAN VP+ +      + A  GK V S+                  GN
Sbjct: 185 DNSKQTSQDTKGSGANSVPRNSGGHRKMSNAANGKNVNSSTTVVNARNASIESKTGLAGN 244

Query: 594 CSTSGTEQYEQRRV--ITGQGIVPNGVPSGSSYPRRNNTCKS-ETGEAERIDVSQAGPPK 424
            +T+G  Q ++  +   TGQ    N   + +   R NN  K+ +   A++    QA P  
Sbjct: 245 QATNGKTQTDRTNIDNSTGQAGQANAQSANTVNNRVNNNSKAGQVSNAKQARKQQAAP-- 302

Query: 423 PYTGNKLPATVDGRNG 376
              GN   A+  G  G
Sbjct: 303 --GGNTSEASKSGSGG 316

>RTN4R_RAT (Q99M75) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +1

Query: 322 LPDPVTRIF*HWKRSLPVPVAAIHGCR*FISCIWLWWPSLAHVDPFSFTCFAL 480
           +P    RIF H  R   VP A+   CR  ++ +WL   +LA +D  +FT   L
Sbjct: 55  IPASSQRIFLHGNRISYVPAASFQSCR-NLTILWLHSNALAGIDAAAFTGLTL 106

>RTN4R_MACFA (Q9N0E3) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +1

Query: 322 LPDPVTRIF*HWKRSLPVPVAAIHGCR*FISCIWLWWPSLAHVDPFSFTCFAL 480
           +P    RIF H  R   VP A+   CR  ++ +WL    LA +D  +F   AL
Sbjct: 55  IPASSQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAAAFAGLAL 106

>LYAM2_HORSE (Q95LG1) E-selectin precursor (Endothelial leukocyte adhesion|
           molecule 1) (ELAM-1) (Leukocyte-endothelial cell
           adhesion molecule 2) (LECAM2) (CD62E antigen)
          Length = 610

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 36/130 (27%), Positives = 47/130 (36%), Gaps = 9/130 (6%)
 Frame = -2

Query: 708 NTQKPRRDTASVGANRVPQGAAVARPGKVVGSALRYGNCSTSGTEQYEQR----RVITGQ 541
           +++KP  +     A R PQG  V       G      +C+ S  E +E R       T Q
Sbjct: 418 DSEKPTCEAVRCDAVRQPQGGLVRCTHSAAGEFTYKSSCAFSCEEGFELRGSAQLECTLQ 477

Query: 540 GIVPNGVPS-----GSSYPRRNNTCKSETGEAERIDVSQAGPPKPYTGNKLPATVDGRNG 376
           G     VPS      +S         S +GE     V     P+ +T N   A   G  G
Sbjct: 478 GQWTQEVPSCQVVQCASLAVPGKVSMSCSGEPVFGAVCTFACPEGWTLNGSAALTCGATG 537

Query: 375 HW*TSLPMSE 346
           HW   LP  E
Sbjct: 538 HWSGMLPTCE 547

>ATP6_XENLA (P00849) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)|
          Length = 226

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +2

Query: 422 GFGGPAWLTSILSASPVSLLQVLFLLGYELPEGTPFGTIPWPVI 553
           G   P WL +++ AS  +     + LG+ LPEGTP   IP  +I
Sbjct: 104 GLAVPLWLATVIMASKPTN----YALGHLLPEGTPTPLIPVLII 143

>ATP6_SQUAC (Q9ZZ49) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)|
          Length = 227

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = +2

Query: 425 FGGPAWLTSILSASPVSLLQVLFLLGYELPEGTPFGTIPWPVI 553
           F  P WLT++L      L Q    LG+ LPEGTP   IP  +I
Sbjct: 105 FAIPLWLTTVLIGM---LNQPTVALGHLLPEGTPTLLIPILII 144

>ATP6_BRARE (Q9MIY5) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)|
          Length = 227

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 422 GFGGPAWLTSILSASPVSLLQVLFLLGYELPEGTPFGTIPWPVI 553
           GF  P WL +++        Q    LG+ LPEGTP   IP  +I
Sbjct: 104 GFAVPLWLATVIIGMKN---QPTIALGHLLPEGTPIPLIPALII 144

>ARLY_STRCL (P50988) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 473

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 25/82 (30%), Positives = 35/82 (42%)
 Frame = -3

Query: 695 HAEILLQLVQTEFLKVLLSQDLVKWLVRHFVMVTVQHLVLSNMNSEGLSQAKELFQTAFL 516
           H E + +L    F    L+ D+ +WLVR  V   V H V      E  S   EL Q    
Sbjct: 358 HRERMEELAPAGFS---LATDIAEWLVRQGVPFRVAHDVAGACVKECESAGIELHQLTDE 414

Query: 515 QAAHTLEEITPARAKQVKLKGS 450
           Q A   E +TP     + ++G+
Sbjct: 415 QFAAISEHLTPEVRSVLTVRGA 436

>NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)|
          Length = 2498

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
 Frame = -2

Query: 696  PRRDTASVGANRVPQGAAVARPGKVV-GSALRYGNCSTSGTEQYEQRRVITGQGIVPNGV 520
            PR+D  S  + + P+ +     G +  G+ ++Y + S     ++  + +ITG   +  GV
Sbjct: 1414 PRQDLVSQESRKTPESSRQIMEGSISQGTPIKYESTSGQSAIKHNVKSLITGPSNLSWGV 1473

Query: 519  PSGSSYP---------RRNNTCKSETGEAERIDVSQAGP 430
            P   + P         +  +T  S+   +    V  +GP
Sbjct: 1474 PQMDNMPENLKMGERSKHEDTKSSDAIRSRHTSVVSSGP 1512

>ATP6_CYPCA (P24946) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)|
          Length = 227

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 422 GFGGPAWLTSILSASPVSLLQVLFLLGYELPEGTPFGTIPWPVI 553
           GF  P WL +++        Q    LG+ LPEGTP   IP  +I
Sbjct: 104 GFAVPLWLATVIIGMRN---QPTIALGHLLPEGTPIPLIPVLII 144

>ATP6_SCYCA (O79406) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)|
          Length = 227

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 425 FGGPAWLTSILSASPVSLLQVLFLLGYELPEGTPFGTIPWPVI 553
           F  P WLT++L        Q    LG+ LPEGTP   +P  +I
Sbjct: 105 FALPLWLTTVLIGM---FNQPTIALGHLLPEGTPTPLVPVLII 144

>ATP6_CARAU (O78684) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)|
          Length = 227

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 422 GFGGPAWLTSILSASPVSLLQVLFLLGYELPEGTPFGTIPWPVI 553
           GF  P WL +++        Q    LG+ LPEGTP   IP  +I
Sbjct: 104 GFAVPLWLATVIIGMRN---QPTVALGHLLPEGTPIPLIPVLII 144

>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 3/164 (1%)
 Frame = -2

Query: 687 DTASVGANRVPQGAAVARPGKVVGSALRYGNCSTSGTEQYEQRRVITG-QGIVPNGVPSG 511
           +T +     +P  A+ A     +GS    G CS SGT   +   V       V NGVP+ 
Sbjct: 369 NTITTATPTMPTIASGAAGSVGLGSGAEAGVCSNSGTASGDILNVAAVLAAAVDNGVPTH 428

Query: 510 SSYPRRNNTCKSETGEAERIDVSQAGPPKPYTGNKLPATVDGRNGHW*TSLPMSENPCHW 331
               R N   +S T  +     S +  P  Y+ +   ++    + H   S P+  +    
Sbjct: 429 PIRTRHNLHGRSTTSSSR----SHSRSPSSYSSSHSSSSSSHSSSHSHASSPVQSSGNCA 484

Query: 330 IRKGYSFQGHTFKHGILYRVILSVTLTSPGDD--RTAC*VVAAG 205
           + +G S            R + SVT+TS   +   TA  V +AG
Sbjct: 485 MAEGRS-----------SRTVNSVTVTSNSSNPSGTAVTVSSAG 517

>HXC12_HUMAN (P31275) Homeobox protein Hox-C12 (Hox-3F)|
          Length = 282

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -2

Query: 525 GVPSGSSYPRRNNTCKSETGEAERIDVSQAGPPKPYTGN 409
           G+PS  SYPRR+N C      AE  +    G P+PY G+
Sbjct: 38  GLPS-LSYPRRDNVCSLSWPSAEPCN----GYPQPYLGS 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,439,492
Number of Sequences: 219361
Number of extensions: 2284000
Number of successful extensions: 5766
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5765
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7536258401
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)