ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18l06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL354872.9| Human DNA sequence from clone RP11-42O15 on chro... 44 0.47
2gb|AC158661.7| Mus musculus 6 BAC RP23-31E23 (Roswell Park Cance... 44 0.47
3gb|AC116703.10| Mus musculus chromosome 6, clone RP23-16O17, com... 44 0.47
4emb|AL671916.5| Mouse DNA sequence from clone RP23-294O1 on chro... 44 0.47
5gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosom... 42 1.9
6emb|AL353679.18| Human DNA sequence from clone RP3-418C23 on chr... 42 1.9
7emb|AL133521.1|SPAC1039 S.pombe chromosome I cosmid c1039 42 1.9
8gb|AC151845.7| Mus musculus BAC clone RP23-48N11 from chromosome... 42 1.9
9emb|BX571826.20| Zebrafish DNA sequence from clone DKEY-250K15 i... 42 1.9
10ref|NM_001020426.1| Schizosaccharomyces pombe 972h- hypothetical... 42 1.9
11emb|BX247887.6| Zebrafish DNA sequence from clone CH211-142L10, ... 42 1.9
12dbj|AP000890.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 42 1.9
13dbj|AP000866.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.9
14dbj|AP001017.5| Homo sapiens genomic DNA, chromosome 18p clone:R... 42 1.9
15gb|AC152949.1| Mus musculus 10 BAC RP23-184H3 (Roswell Park Canc... 40 7.4
16gb|AY019287.1| Oryza sativa microsatellite MRG1612 containing (A... 40 7.4
17gb|AC159435.1| Trypanosoma brucei chromosome 8 clone RPCI93-29H2... 40 7.4
18gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 40 7.4
19gb|AC182666.2| Populus trichocarpa clone Pop1-18F23, complete se... 40 7.4
20gb|AC107732.11| Mus musculus chromosome 7, clone RP23-424E6, com... 40 7.4
21gb|AC139943.3| Mus musculus BAC clone RP23-472M3 from chromosome... 40 7.4
22gb|AC122060.3| Mus musculus BAC clone RP24-468P4 from chromosome... 40 7.4
23gb|AC153518.14| Mus musculus 10 BAC RP23-426B18 (Roswell Park Ca... 40 7.4
24emb|CT025688.6| Mouse DNA sequence from clone RP24-310A8 on chro... 40 7.4
25gb|AC004381.1|HUAC004381 Homo sapiens Chromosome 16 BAC clone CI... 40 7.4
26gb|AC122862.4| Mus musculus BAC clone RP23-140O11 from 5, comple... 40 7.4
27gb|AC100154.9| Mus musculus chromosome 7, clone RP23-43N5, compl... 40 7.4
28emb|AL513263.9| Human DNA sequence from clone CTB-1189H8 on chro... 40 7.4
29gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome 40 7.4
30emb|AL139277.7| Human DNA sequence from clone RP11-465E19 on chr... 40 7.4
31gb|AC164636.4| Mus musculus BAC clone RP23-70P16 from chromosome... 40 7.4
32gb|AC162878.2| Mus musculus chromosome 7, clone RP24-316O13, com... 40 7.4
33gb|AC153914.5| Mus musculus 10 BAC RP23-297H17 (Roswell Park Can... 40 7.4
34emb|BX537304.14| Zebrafish DNA sequence from clone CH211-283H6 i... 40 7.4
35gb|AC123912.1| Homo sapiens chromosome 19 clone RP11-678G14, com... 40 7.4
36gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 40 7.4
37emb|AJ617625.1| Homo sapiens mRNA for synaptotagmin 14 (SYT14 ge... 40 7.4
38emb|AJ617624.1| Homo sapiens mRNA for synaptotagmin 1 (SYT14 gen... 40 7.4
39gb|AC020926.8| Homo sapiens chromosome 16 clone CTD-2152G12, com... 40 7.4
40dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
41dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
42emb|BX255948.4| Zebrafish DNA sequence from clone CH211-250J1, c... 40 7.4
43emb|BX248087.9| Zebrafish DNA sequence from clone CH211-191J22, ... 40 7.4
44gb|AC157657.2| Mus musculus BAC clone RP23-429C4 from chromosome... 40 7.4
45gb|AC022468.5|AC022468 Homo sapiens chromosome 15 clone RP11-546... 40 7.4
46gb|AC010974.9| Homo sapiens BAC clone RP11-159N20 from 2, comple... 40 7.4
47gb|AC022075.29| Homo sapiens 12 BAC RP11-277P12 (Roswell Park Ca... 40 7.4
48dbj|AP005390.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
49dbj|AB163421.1| Physcomitrella patens PHOTA2 mRNA for phototropi... 40 7.4
50dbj|AP005637.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
51dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
52emb|CR759742.10| Zebrafish DNA sequence from clone CH211-149K24 ... 40 7.4
53emb|AL772216.15| Mouse DNA sequence from clone RP23-153M22 on ch... 40 7.4
54gb|AC132425.3| Mus musculus BAC clone RP23-311O15 from 7, comple... 40 7.4
55emb|CR385061.15| Zebrafish DNA sequence from clone BUSM1-20K6, c... 40 7.4
56dbj|AP006111.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 7.4
57emb|AL840626.7| Mouse DNA sequence from clone RP23-151M8 on chro... 40 7.4
58emb|AL672052.7| Mouse DNA sequence from clone RP23-60A20 on chro... 40 7.4
59gb|AC153551.4| Mus musculus 10 BAC RP23-383A7 (Roswell Park Canc... 40 7.4 
>emb|AL354872.9| Human DNA sequence from clone RP11-42O15 on chromosome 1 Contains the
             CTH gene for cystathionase (cystathionine gamma-lyase) and
             a cysteine and histidine-rich domain (CHORD)-containing
             zinc binding protein 1 (CHORDC1) pseudogene, complete
             sequence
          Length = 151777

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 39    ttgtgaatatacatatacatat 60
             ||||||||||||||||||||||
Sbjct: 25397 ttgtgaatatacatatacatat 25418
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>gb|AC158661.7| Mus musculus 6 BAC RP23-31E23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 181763

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 39     ttgtgaatatacatatacatat 60
              ||||||||||||||||||||||
Sbjct: 179964 ttgtgaatatacatatacatat 179985
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>gb|AC116703.10| Mus musculus chromosome 6, clone RP23-16O17, complete sequence
          Length = 202915

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 39    ttgtgaatatacatatacatat 60
             ||||||||||||||||||||||
Sbjct: 25888 ttgtgaatatacatatacatat 25909
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>emb|AL671916.5| Mouse DNA sequence from clone RP23-294O1 on chromosome X, complete
              sequence
          Length = 205436

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 45     atatacatatacatattacaga 66
              ||||||||||||||||||||||
Sbjct: 149937 atatacatatacatattacaga 149958
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>gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosome 10, complete sequence
          Length = 219818

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 40     tgtgaatatacatatacatat 60
              |||||||||||||||||||||
Sbjct: 166288 tgtgaatatacatatacatat 166268
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>emb|AL353679.18| Human DNA sequence from clone RP3-418C23 on chromosome 6 Contains the
             5'end of a novel gene, a novel gene and a CpG island,
             complete sequence
          Length = 100111

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 505   tgagaagctttttgaacatccattt 529
             ||||||||||| |||||||||||||
Sbjct: 53020 tgagaagctttatgaacatccattt 52996
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>emb|AL133521.1|SPAC1039 S.pombe chromosome I cosmid c1039
          Length = 27893

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 234   gatttcaggattctccctctt 254
             |||||||||||||||||||||
Sbjct: 11097 gatttcaggattctccctctt 11117
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>gb|AC151845.7| Mus musculus BAC clone RP23-48N11 from chromosome 10, complete sequence
          Length = 204309

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 40     tgtgaatatacatatacatat 60
              |||||||||||||||||||||
Sbjct: 165461 tgtgaatatacatatacatat 165481
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>emb|BX571826.20| Zebrafish DNA sequence from clone DKEY-250K15 in linkage group 16,
             complete sequence
          Length = 167796

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 44    aatatacatatacatattaca 64
             |||||||||||||||||||||
Sbjct: 45034 aatatacatatacatattaca 45054
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>ref|NM_001020426.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC1039.04),
           partial mRNA
          Length = 1524

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 234 gatttcaggattctccctctt 254
           |||||||||||||||||||||
Sbjct: 172 gatttcaggattctccctctt 192
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>emb|BX247887.6| Zebrafish DNA sequence from clone CH211-142L10, complete sequence
          Length = 143903

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 44     aatatacatatacatattaca 64
              |||||||||||||||||||||
Sbjct: 135787 aatatacatatacatattaca 135807
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>dbj|AP000890.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-4L5, complete
              sequence
          Length = 111962

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 42     tgaatatacatatacatatta 62
              |||||||||||||||||||||
Sbjct: 107667 tgaatatacatatacatatta 107687
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>dbj|AP000866.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-677M14, complete
             sequence
          Length = 187960

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 42    tgaatatacatatacatatta 62
             |||||||||||||||||||||
Sbjct: 48951 tgaatatacatatacatatta 48971
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>dbj|AP001017.5| Homo sapiens genomic DNA, chromosome 18p clone:RP11-712C7, complete
             sequences
          Length = 131000

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 44    aatatacatatacatattaca 64
             |||||||||||||||||||||
Sbjct: 25064 aatatacatatacatattaca 25084
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>gb|AC152949.1| Mus musculus 10 BAC RP23-184H3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 206898

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 45    atatacatatacatattacagaag 68
             ||||||||||| ||||||||||||
Sbjct: 48113 atatacatatatatattacagaag 48136
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>gb|AY019287.1| Oryza sativa microsatellite MRG1612 containing (AT)X30, closest to
           marker C1374, genomic sequence
          Length = 260

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 45  atatacatatacatattaca 64
           ||||||||||||||||||||
Sbjct: 258 atatacatatacatattaca 239
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>gb|AC159435.1| Trypanosoma brucei chromosome 8 clone RPCI93-29H22, complete sequence
          Length = 148464

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    tgaatatacatatacatatt 61
             ||||||||||||||||||||
Sbjct: 65797 tgaatatacatatacatatt 65778
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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 42      tgaatatacatatacatatt 61
               ||||||||||||||||||||
Sbjct: 1276020 tgaatatacatatacatatt 1276001
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>gb|AC182666.2| Populus trichocarpa clone Pop1-18F23, complete sequence
          Length = 105222

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    atatacatatacatattaca 64
             ||||||||||||||||||||
Sbjct: 94904 atatacatatacatattaca 94885
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>gb|AC107732.11| Mus musculus chromosome 7, clone RP23-424E6, complete sequence
          Length = 194045

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     gtgaatatacatatacatat 60
              ||||||||||||||||||||
Sbjct: 169077 gtgaatatacatatacatat 169096
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>gb|AC139943.3| Mus musculus BAC clone RP23-472M3 from chromosome 7, complete
            sequence
          Length = 183421

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 39   ttgtgaatatacatatacatatta 62
            |||||||| |||||||||||||||
Sbjct: 5776 ttgtgaatgtacatatacatatta 5799
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>gb|AC122060.3| Mus musculus BAC clone RP24-468P4 from chromosome 12, complete sequence
          Length = 170916

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    gaatatacatatacatatta 62
             ||||||||||||||||||||
Sbjct: 20036 gaatatacatatacatatta 20017
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>gb|AC153518.14| Mus musculus 10 BAC RP23-426B18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 160531

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 45     atatacatatacatattacagaag 68
              ||||||||||| ||||||||||||
Sbjct: 149782 atatacatatatatattacagaag 149805
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>emb|CT025688.6| Mouse DNA sequence from clone RP24-310A8 on chromosome 9, complete
              sequence
          Length = 233365

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     tgaatatacatatacatatt 61
              ||||||||||||||||||||
Sbjct: 142112 tgaatatacatatacatatt 142093
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>gb|AC004381.1|HUAC004381 Homo sapiens Chromosome 16 BAC clone CIT987SK-44M2, complete sequence
          Length = 213541

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 514   ttttgaacatccattttcatccca 537
             ||||||||||||| ||||||||||
Sbjct: 31983 ttttgaacatccagtttcatccca 31960
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>gb|AC122862.4| Mus musculus BAC clone RP23-140O11 from 5, complete sequence
          Length = 192695

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 37    cattgtgaatatacatatacatat 60
             ||||||| ||||||||||||||||
Sbjct: 88279 cattgtgtatatacatatacatat 88256
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>gb|AC100154.9| Mus musculus chromosome 7, clone RP23-43N5, complete sequence
          Length = 181412

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     gtgaatatacatatacatat 60
              ||||||||||||||||||||
Sbjct: 118893 gtgaatatacatatacatat 118874
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>emb|AL513263.9| Human DNA sequence from clone CTB-1189H8 on chromosome 1 Contains the
             3' end of the SYT14 gene for synaptotagmin XIV, complete
             sequence
          Length = 125553

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    tgaatatacatatacatatt 61
             ||||||||||||||||||||
Sbjct: 68804 tgaatatacatatacatatt 68785
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>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 515    tttgaacatccattttcatcccag 538
              |||||| |||||||||||||||||
Sbjct: 391387 tttgaatatccattttcatcccag 391364
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>emb|AL139277.7| Human DNA sequence from clone RP11-465E19 on chromosome Xp11.1-11.23
             Contains the 3' end of the RRAGB for Ras-related GTP
             binding B, complete sequence
          Length = 158591

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    tgtgaatatacatatacata 59
             ||||||||||||||||||||
Sbjct: 13698 tgtgaatatacatatacata 13717
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>gb|AC164636.4| Mus musculus BAC clone RP23-70P16 from chromosome 6, complete sequence
          Length = 212096

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     atatacatatacatattaca 64
              ||||||||||||||||||||
Sbjct: 149276 atatacatatacatattaca 149295
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>gb|AC162878.2| Mus musculus chromosome 7, clone RP24-316O13, complete sequence
          Length = 198612

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     gtgaatatacatatacatat 60
              ||||||||||||||||||||
Sbjct: 156637 gtgaatatacatatacatat 156618
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>gb|AC153914.5| Mus musculus 10 BAC RP23-297H17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 174199

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 41     gtgaatatacatatacatattaca 64
              ||||||||||||||| ||||||||
Sbjct: 160768 gtgaatatacatataaatattaca 160745
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>emb|BX537304.14| Zebrafish DNA sequence from clone CH211-283H6 in linkage group 5,
             complete sequence
          Length = 157564

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   gccactccccatctatgcat 315
             ||||||||||||||||||||
Sbjct: 65435 gccactccccatctatgcat 65454
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>gb|AC123912.1| Homo sapiens chromosome 19 clone RP11-678G14, complete sequence
          Length = 103476

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 514   ttttgaacatccattttcatccca 537
             ||||||||||||| ||||||||||
Sbjct: 59480 ttttgaacatccagtttcatccca 59457
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>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 306     atctatgcatttattcagat 325
               ||||||||||||||||||||
Sbjct: 1042741 atctatgcatttattcagat 1042722
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>emb|AJ617625.1| Homo sapiens mRNA for synaptotagmin 14 (SYT14 gene), splice variant 3
          Length = 4850

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 42   tgaatatacatatacatatt 61
            ||||||||||||||||||||
Sbjct: 4070 tgaatatacatatacatatt 4051
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>emb|AJ617624.1| Homo sapiens mRNA for synaptotagmin 1 (SYT14 gene), splice variant 2
          Length = 5088

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 42   tgaatatacatatacatatt 61
            ||||||||||||||||||||
Sbjct: 4308 tgaatatacatatacatatt 4289
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>gb|AC020926.8| Homo sapiens chromosome 16 clone CTD-2152G12, complete sequence
          Length = 93288

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 514   ttttgaacatccattttcatccca 537
             ||||||||||||| ||||||||||
Sbjct: 51122 ttttgaacatccagtttcatccca 51099
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 147      ctttcaggtacaaaacctcc 166
                ||||||||||||||||||||
Sbjct: 12493641 ctttcaggtacaaaacctcc 12493622
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 45       atatacatatacatattaca 64
                ||||||||||||||||||||
Sbjct: 11792353 atatacatatacatattaca 11792372
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>emb|BX255948.4| Zebrafish DNA sequence from clone CH211-250J1, complete sequence
          Length = 194257

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     aatatacatatacatattac 63
              ||||||||||||||||||||
Sbjct: 123984 aatatacatatacatattac 123965
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>emb|BX248087.9| Zebrafish DNA sequence from clone CH211-191J22, complete sequence
          Length = 150181

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    aatatacatatacatattac 63
             ||||||||||||||||||||
Sbjct: 85674 aatatacatatacatattac 85655
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>gb|AC157657.2| Mus musculus BAC clone RP23-429C4 from chromosome 7, complete sequence
          Length = 194276

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     atatacatatacatattaca 64
              ||||||||||||||||||||
Sbjct: 111534 atatacatatacatattaca 111553
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>gb|AC022468.5|AC022468 Homo sapiens chromosome 15 clone RP11-546B15 map 15q15, complete sequence
          Length = 183539

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     atatacatattacagaagtt 70
              ||||||||||||||||||||
Sbjct: 108710 atatacatattacagaagtt 108691
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>gb|AC010974.9| Homo sapiens BAC clone RP11-159N20 from 2, complete sequence
          Length = 147131

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    catatgagatggttaaatga 112
             ||||||||||||||||||||
Sbjct: 80773 catatgagatggttaaatga 80754
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>gb|AC022075.29| Homo sapiens 12 BAC RP11-277P12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 168351

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 514   ttttgaacatccattttcatccca 537
             ||||||||||||| ||||||||||
Sbjct: 53010 ttttgaacatccagtttcatccca 53033
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>dbj|AP005390.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBb0075O18
          Length = 125411

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     atatacatatacatattaca 64
              ||||||||||||||||||||
Sbjct: 122053 atatacatatacatattaca 122072
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>dbj|AB163421.1| Physcomitrella patens PHOTA2 mRNA for phototropin, complete cds
          Length = 4246

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 41   gtgaatatacatatacatat 60
            ||||||||||||||||||||
Sbjct: 4129 gtgaatatacatatacatat 4110
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>dbj|AP005637.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
            clone:P0711A01
          Length = 162400

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  ctttcaggtacaaaacctcc 166
            ||||||||||||||||||||
Sbjct: 8968 ctttcaggtacaaaacctcc 8949
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>dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1705_A03
          Length = 168689

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    atatacatatacatattaca 64
             ||||||||||||||||||||
Sbjct: 70638 atatacatatacatattaca 70657
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>emb|CR759742.10| Zebrafish DNA sequence from clone CH211-149K24 in linkage group 7,
              complete sequence
          Length = 130794

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     atatacatatacatattaca 64
              ||||||||||||||||||||
Sbjct: 112385 atatacatatacatattaca 112404
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>emb|AL772216.15| Mouse DNA sequence from clone RP23-153M22 on chromosome 2, complete
             sequence
          Length = 212233

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    tgtgaatatacatatacata 59
             ||||||||||||||||||||
Sbjct: 47428 tgtgaatatacatatacata 47447
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>gb|AC132425.3| Mus musculus BAC clone RP23-311O15 from 7, complete sequence
          Length = 160552

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 39     ttgtgaatatacatatacatatta 62
              |||||||| |||||||||||||||
Sbjct: 106258 ttgtgaatgtacatatacatatta 106281
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>emb|CR385061.15| Zebrafish DNA sequence from clone BUSM1-20K6, complete sequence
          Length = 79139

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   gccactccccatctatgcat 315
             ||||||||||||||||||||
Sbjct: 46014 gccactccccatctatgcat 46033
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>dbj|AP006111.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT45P14, TM0196a,
             complete sequence
          Length = 89377

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    ttgtgaatatacatatacat 58
             ||||||||||||||||||||
Sbjct: 64904 ttgtgaatatacatatacat 64885
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>emb|AL840626.7| Mouse DNA sequence from clone RP23-151M8 on chromosome 2, complete
             sequence
          Length = 181014

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 36    gcattgtgaatatacatatacata 59
             |||||||| |||||||||||||||
Sbjct: 28149 gcattgtgcatatacatatacata 28126
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>emb|AL672052.7| Mouse DNA sequence from clone RP23-60A20 on chromosome X, complete
             sequence
          Length = 178995

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    atatacatatacatattaca 64
             ||||||||||||||||||||
Sbjct: 11842 atatacatatacatattaca 11861
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>gb|AC153551.4| Mus musculus 10 BAC RP23-383A7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 216106

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 41    gtgaatatacatatacatattaca 64
             ||||||||||||||| ||||||||
Sbjct: 13285 gtgaatatacatataaatattaca 13262


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,017,155
Number of Sequences: 3902068
Number of extensions: 5017155
Number of successful extensions: 156092
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 155650
Number of HSP's gapped (non-prelim): 442
length of query: 547
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 524
effective length of database: 17,143,297,704
effective search space: 8983087996896
effective search space used: 8983087996896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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