ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 pr... 32 0.60
2DUS12_HUMAN (Q9UNI6) Dual specificity protein phosphatase 12 (EC... 30 1.3
3DUS12_MOUSE (Q9D0T2) Dual specificity protein phosphatase 12 (EC... 29 3.9
4DNAE2_MYCPA (Q73U92) Error-prone DNA polymerase (EC 2.7.7.7) 28 8.7
5BNC1_HUMAN (Q01954) Zinc finger protein basonuclin-1 28 8.7

>CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 precursor (EC|
           2.7.11.1)
          Length = 901

 Score = 31.6 bits (70), Expect = 0.60
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -3

Query: 174 QCFKKFAETAEKCVADNGIERPSMGDVLWNLEFALQM 64
           +  KK A  A KCV   G +RPSM  V   LE AL +
Sbjct: 748 EALKKIASVACKCVRMRGKDRPSMDKVTTALEHALAL 784



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>DUS12_HUMAN (Q9UNI6) Dual specificity protein phosphatase 12 (EC 3.1.3.48) (EC|
           3.1.3.16) (Dual specificity tyrosine phosphatase YVH1)
          Length = 340

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -1

Query: 164 RSLPRQLRSASPTTASNALRWEMCFGTWSLLFRCRKARR 48
           ++LP++L +  PTT S  L+ E       +L++CRK RR
Sbjct: 195 QNLPQELFAVDPTTVSQGLKDE-------VLYKCRKCRR 226



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>DUS12_MOUSE (Q9D0T2) Dual specificity protein phosphatase 12 (EC 3.1.3.48) (EC|
           3.1.3.16) (Dual specificity phosphatase T-DSP4) (Dual
           specificity phosphatase VH1)
          Length = 339

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 161 SLPRQLRSASPTTASNALRWEMCFGTWSLLFRCRKARR 48
           +LP++L +  PTT S  L+ +       +L++CRK RR
Sbjct: 195 NLPQELFAVDPTTISQGLKDD-------ILYKCRKCRR 225



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>DNAE2_MYCPA (Q73U92) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1093

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -3

Query: 153  ETAEKCVADNGIERP--SMGDVLWNLEFALQMQESAEESGSFGC-GMS 19
            + AEK V +     P  S+ D+   L+ ++Q  E+   +G+FGC GMS
Sbjct: 876  DLAEKLVQERKANGPFTSLLDLTARLQLSVQQTEALATAGAFGCFGMS 923



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>BNC1_HUMAN (Q01954) Zinc finger protein basonuclin-1|
          Length = 994

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 6   ECPHLTSHSQSFRSPPRFPASEEQTPGSKA 95
           +CP  T  S   R PP +P S E + G  A
Sbjct: 439 KCPGFTVTSPDCRPPPSYPGSGEDSKGQPA 468


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,532,583
Number of Sequences: 219361
Number of extensions: 471372
Number of successful extensions: 1823
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1821
length of database: 80,573,946
effective HSP length: 38
effective length of database: 72,238,228
effective search space used: 1733717472
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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