ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18k23 |
|---|---|
| Clone Library Name | barley_pub |
>IMM0_ECOLI (P33637) Colicin-E1 immunity protein (ImmE1) (Microcin-E1 immunity| protein) Length = 113 Score = 31.2 bits (69), Expect = 2.9 Identities = 19/62 (30%), Positives = 27/62 (43%) Frame = +1 Query: 226 SKSLCPITENKISSNEMSPLVTRV*FVFFSKCFFEHMPTLNNLEVTRLSNLRMFKRKCAI 405 S LCP ++ I + F F K FFE LNN V +L+ ++ C + Sbjct: 46 STILCPYSKYAIE---------HIAFNFIKKHFFERRKNLNNAPVAKLNLFMLYNLLCLV 96 Query: 406 LA 411 LA Sbjct: 97 LA 98
>IMM1_ECOLI (P02985) Colicin-E1 immunity protein (ImmE1) (Microcin-E1 immunity| protein) Length = 113 Score = 30.8 bits (68), Expect = 3.8 Identities = 21/74 (28%), Positives = 32/74 (43%) Frame = +1 Query: 190 LISSVRMRSGDASKSLCPITENKISSNEMSPLVTRV*FVFFSKCFFEHMPTLNNLEVTRL 369 L+S + + S LCP ++ I + F F K FFE LNN V +L Sbjct: 34 LVSDKMLYAIVISTILCPYSKYAIEY---------IAFNFIKKDFFERRKNLNNAPVAKL 84 Query: 370 SNLRMFKRKCAILA 411 + ++ C +LA Sbjct: 85 NLFMLYNLLCLVLA 98
>PEPT_ECOLI (P29745) Peptidase T (EC 3.4.11.4) (Tripeptide aminopeptidase)| (Aminotripeptidase) (Tripeptidase) Length = 408 Score = 30.8 bits (68), Expect = 3.8 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +2 Query: 545 PTLEAISGHGTNAQATLRVSPCTNLYSGGYMGLPINSHGE 664 P L+ I G AQ + PC NL++GGY N HG+ Sbjct: 347 PELKPIRGGTDGAQLSFMGLPCPNLFTGGY-----NYHGK 381
>PEPT_ECOL6 (P65803) Peptidase T (EC 3.4.11.4) (Tripeptide aminopeptidase)| (Aminotripeptidase) (Tripeptidase) Length = 408 Score = 30.8 bits (68), Expect = 3.8 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +2 Query: 545 PTLEAISGHGTNAQATLRVSPCTNLYSGGYMGLPINSHGE 664 P L+ I G AQ + PC NL++GGY N HG+ Sbjct: 347 PELKPIRGGTDGAQLSFMGLPCPNLFTGGY-----NYHGK 381
>PEPT_ECO57 (P65804) Peptidase T (EC 3.4.11.4) (Tripeptide aminopeptidase)| (Aminotripeptidase) (Tripeptidase) Length = 408 Score = 30.8 bits (68), Expect = 3.8 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +2 Query: 545 PTLEAISGHGTNAQATLRVSPCTNLYSGGYMGLPINSHGE 664 P L+ I G AQ + PC NL++GGY N HG+ Sbjct: 347 PELKPIRGGTDGAQLSFMGLPCPNLFTGGY-----NYHGK 381
>PEPT_YERPS (Q669P7) Peptidase T (EC 3.4.11.4) (Tripeptide aminopeptidase)| (Aminotripeptidase) (Tripeptidase) Length = 411 Score = 30.4 bits (67), Expect = 5.0 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +2 Query: 545 PTLEAISGHGTNAQATLRVSPCTNLYSGGYMGLPINSHGE 664 P ++ I G AQ + + PC N+++GGY N HG+ Sbjct: 347 PIMKPIRGGTDGAQLSFKGLPCPNIFTGGY-----NYHGK 381
>PEPT_YERPE (Q8ZFR0) Peptidase T (EC 3.4.11.4) (Tripeptide aminopeptidase)| (Aminotripeptidase) (Tripeptidase) Length = 411 Score = 30.4 bits (67), Expect = 5.0 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +2 Query: 545 PTLEAISGHGTNAQATLRVSPCTNLYSGGYMGLPINSHGE 664 P ++ I G AQ + + PC N+++GGY N HG+ Sbjct: 347 PIMKPIRGGTDGAQLSFKGLPCPNIFTGGY-----NYHGK 381
>PEPT_SALTY (P26311) Peptidase T (EC 3.4.11.4) (Tripeptide aminopeptidase)| (Aminotripeptidase) (Tripeptidase) Length = 409 Score = 30.0 bits (66), Expect = 6.5 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +2 Query: 545 PTLEAISGHGTNAQATLRVSPCTNLYSGGYMGLPINSHGE 664 P ++ I G AQ + PC NL++GGY N HG+ Sbjct: 347 PEMKPIRGGTDGAQLSFMGLPCPNLFTGGY-----NYHGK 381
>PEPT_SALTI (Q8Z7H6) Peptidase T (EC 3.4.11.4) (Tripeptide aminopeptidase)| (Aminotripeptidase) (Tripeptidase) Length = 409 Score = 30.0 bits (66), Expect = 6.5 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +2 Query: 545 PTLEAISGHGTNAQATLRVSPCTNLYSGGYMGLPINSHGE 664 P ++ I G AQ + PC NL++GGY N HG+ Sbjct: 347 PEMKPIRGGTDGAQLSFMGLPCPNLFTGGY-----NYHGK 381
>PEPT_SALPA (Q5PMK2) Peptidase T (EC 3.4.11.4) (Tripeptide aminopeptidase)| (Aminotripeptidase) (Tripeptidase) Length = 409 Score = 30.0 bits (66), Expect = 6.5 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +2 Query: 545 PTLEAISGHGTNAQATLRVSPCTNLYSGGYMGLPINSHGE 664 P ++ I G AQ + PC NL++GGY N HG+ Sbjct: 347 PEMKPIRGGTDGAQLSFMGLPCPNLFTGGY-----NYHGK 381
>PEPT_SALCH (Q57QC7) Peptidase T (EC 3.4.11.4) (Tripeptide aminopeptidase)| (Aminotripeptidase) (Tripeptidase) Length = 409 Score = 30.0 bits (66), Expect = 6.5 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +2 Query: 545 PTLEAISGHGTNAQATLRVSPCTNLYSGGYMGLPINSHGE 664 P ++ I G AQ + PC NL++GGY N HG+ Sbjct: 347 PEMKPIRGGTDGAQLSFMGLPCPNLFTGGY-----NYHGK 381
>UXAC_XANCP (Q8P3F4) Uronate isomerase (EC 5.3.1.12) (Glucuronate isomerase)| (Uronic isomerase) Length = 471 Score = 30.0 bits (66), Expect = 6.5 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Frame = -2 Query: 181 MPVIKAHGHDDSLAF-MDQPTCNNGPYCLV-DHLAFRVFWS 65 +P+I HGH D F D P N LV DH FR+ +S Sbjct: 33 LPIISPHGHTDPAWFATDAPFANATELLLVPDHYVFRMLYS 73
>PKHG1_HUMAN (Q9ULL1) Pleckstrin homology domain-containing family G member 1| Length = 1385 Score = 29.6 bits (65), Expect = 8.5 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = +1 Query: 157 VHVL*LPAFTPLISSVRMRSGDASKSLCPITENKIS 264 V L LP L++ V+ R+G AS++ CP E+ IS Sbjct: 888 VSTLSLPESQALLTPVKSRAGRASRANCPFEEDLIS 923
>DNAA_TREPA (O83047) Chromosomal replication initiator protein dnaA| Length = 464 Score = 29.6 bits (65), Expect = 8.5 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = +1 Query: 373 NLRMFKRKCAILARQTHNYGLSGGKKTIHIAKEL 474 N+ F+ +CAIL ++ NY + K IHI+ ++ Sbjct: 282 NMPCFETRCAILIKKIQNYNSTYPHKAIHISDDV 315 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,007,100 Number of Sequences: 219361 Number of extensions: 2127654 Number of successful extensions: 5089 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4957 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5088 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
