ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18k23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 394 e-106
2ref|NM_188205.1| Oryza sativa (japonica cultivar-group), mRNA 86 2e-13
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
4dbj|AP005168.3| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
5dbj|AP004264.4| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
6dbj|AK120134.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 2e-13
7dbj|AP004336.2| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
8emb|AL929596.11| Zebrafish DNA sequence from clone DKEY-53H9, co... 46 0.15
9emb|BX088601.12| Zebrafish DNA sequence from clone DKEY-221L8, c... 46 0.15
10emb|AL928658.6| Mouse DNA sequence from clone RP23-238A18 on chr... 44 0.58
11gb|AY387697.1| Caenorhabditis elegans SOL-1 (sol-1) mRNA, comple... 42 2.3
12emb|BX004847.31| Zebrafish DNA sequence from clone CH211-59C8 in... 42 2.3
13emb|Z79694.1|CEC15A11 Caenorhabditis elegans Cosmid C15A11, comp... 42 2.3
14emb|BX004997.17| Zebrafish DNA sequence from clone DKEY-46E6 in ... 42 2.3
15emb|AL138664.1|ATT5C2 Arabidopsis thaliana DNA chromosome 3, BAC... 42 2.3
16ref|XM_690681.1| PREDICTED: Danio rerio similar to delangin isof... 42 2.3
17emb|BX649598.17| Zebrafish DNA sequence from clone CH211-214P12 ... 42 2.3
18ref|NM_059687.4| Caenorhabditis elegans Suppressor Of Lurcher mo... 42 2.3
19emb|BX005336.10| Zebrafish DNA sequence from clone DKEY-85K7 in ... 42 2.3
20gb|AC068943.4| Homo sapiens BAC clone RP11-769M2 from 2, complet... 42 2.3
21emb|BX470162.9| Zebrafish DNA sequence from clone CH211-216L23 i... 42 2.3
22gb|CP000226.1| Drosophila melanogaster genomic scaffold 21100002... 42 2.3
23gb|AC161416.2| Mus musculus BAC clone RP23-306A2 from chromosome... 40 9.1
24gb|AC094830.5| Rattus norvegicus 8 BAC CH230-3H18 (Children's Ho... 40 9.1
25gb|AC166157.5| Mus musculus BAC clone RP24-193D9 from chromosome... 40 9.1
26gb|AC115116.6| Mus musculus BAC clone RP23-62I3 from chromosome ... 40 9.1
27emb|AJ012386.1|LMO012386 Listeria monocytogenes inlG gene, partial 40 9.1
28emb|BX572077.7| Zebrafish DNA sequence from clone DKEY-103G5 in ... 40 9.1
29emb|AL929088.23| Mouse DNA sequence from clone RP23-360J2 on chr... 40 9.1
30gb|AC132381.4| Mus musculus BAC clone RP23-424F5 from chromosome... 40 9.1
31emb|AL845356.8| Mouse DNA sequence from clone RP23-29O14 on chro... 40 9.1
32gb|DQ302693.1| Listeria monocytogenes strain FSLF2723 internalin... 40 9.1
33gb|DQ302692.1| Listeria monocytogenes strain FSLF2640 internalin... 40 9.1
34gb|DQ302691.1| Listeria monocytogenes strain FSLF2373 internalin... 40 9.1
35gb|DQ302688.1| Listeria monocytogenes strain FSLS6072 internalin... 40 9.1
36gb|DQ302687.1| Listeria monocytogenes strain FSLS4887 internalin... 40 9.1
37gb|DQ302686.1| Listeria monocytogenes strain FSLS4880 internalin... 40 9.1
38gb|DQ302685.1| Listeria monocytogenes strain FSLS4821 internalin... 40 9.1
39gb|DQ302684.1| Listeria monocytogenes strain FSLS4766 internalin... 40 9.1
40gb|DQ302683.1| Listeria monocytogenes strain FSLS4497 internalin... 40 9.1
41gb|DQ302682.1| Listeria monocytogenes strain FSLS4304 internalin... 40 9.1
42gb|DQ302681.1| Listeria monocytogenes strain FSLS4295 internalin... 40 9.1
43gb|DQ302680.1| Listeria monocytogenes strain FSLN4292 internalin... 40 9.1
44gb|DQ302678.1| Listeria monocytogenes strain FSLF2663 internalin... 40 9.1
45gb|DQ302677.1| Listeria monocytogenes strain FSLF2639 internalin... 40 9.1
46gb|DQ302676.1| Listeria monocytogenes strain FSLF2634 internalin... 40 9.1
47gb|DQ302675.1| Listeria monocytogenes strain FSLF2590 internalin... 40 9.1
48gb|DQ302674.1| Listeria monocytogenes strain FSLF2515 internalin... 40 9.1
49gb|DQ302673.1| Listeria monocytogenes strain FSLE1123 internalin... 40 9.1
50emb|AL591975.1| Listeria monocytogenes strain EGD, complete geno... 40 9.1
51gb|U77367.1|LMU77367 Listeria monocytogenes internalin (inlF) ge... 40 9.1 
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score =  394 bits (199), Expect = e-106
 Identities = 227/239 (94%)
 Strand = Plus / Plus

                                                                          
Query: 266    ccaacgaaatgtcaccgttagtaaccagagtgtaatttgtcttcttctcaaagtgtttct 325
              ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136229 ccaacgaaatgtcacggttagtaaccagagtgtaatttgtcttcttctcaaagtgtttct 136288

                                                                          
Query: 326    ttgagcatatgccaactctgaataatttagaagtaacaagattatcaaatttgagaatgt 385
              || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136289 ttcagcatatgccaactctgaataatttagaagtaacaagattatcaaatttgagaatgt 136348

                                                                          
Query: 386    tcaagagaaaatgtgcaatacttgctaggcaaactcataattatggattatcaggtggnn 445
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 136349 tcaagagaaaatgtgcaatacttgctaggcaaactcataattatggattatcaggtggaa 136408

                                                                         
Query: 446    nnnnnncaattcacatagctaaagaactgttttggtcgttagataaacaacttcggata 504
                    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 136409 aaaaaacaattcacatagctaaacaactgttttggtcgttagataaacaacttcagata 136467



 Score =  394 bits (199), Expect = e-106
 Identities = 227/239 (94%)
 Strand = Plus / Plus

                                                                         
Query: 266   ccaacgaaatgtcaccgttagtaaccagagtgtaatttgtcttcttctcaaagtgtttct 325
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96516 ccaacgaaatgtcacggttagtaaccagagtgtaatttgtcttcttctcaaagtgtttct 96575

                                                                         
Query: 326   ttgagcatatgccaactctgaataatttagaagtaacaagattatcaaatttgagaatgt 385
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96576 ttcagcatatgccaactctgaataatttagaagtaacaagattatcaaatttgagaatgt 96635

                                                                         
Query: 386   tcaagagaaaatgtgcaatacttgctaggcaaactcataattatggattatcaggtggnn 445
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 96636 tcaagagaaaatgtgcaatacttgctaggcaaactcataattatggattatcaggtggaa 96695

                                                                        
Query: 446   nnnnnncaattcacatagctaaagaactgttttggtcgttagataaacaacttcggata 504
                   ||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 96696 aaaaaacaattcacatagctaaacaactgttttggtcgttagataaacaacttcagata 96754



 Score =  303 bits (153), Expect = 4e-79
 Identities = 159/161 (98%)
 Strand = Plus / Plus

                                                                          
Query: 505    tgtatgtttgctggaccgacatcatctacaaaaatctgtcccaactctggaagcgatttc 564
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143355 tgtatgtttgctggaccgacatcatctacaaaaatctgtcccaactctggaagcgatttc 143414

                                                                          
Query: 565    tggccatgggacaaatgcacaagctacactccgtgtatctccatgcaccaacttgtacag 624
              |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 143415 tggccatgggacaaatgcacaagctacactccgtgtatctgcatgcaccaacctgtacag 143474

                                                       
Query: 625    tggcggctatatgggtcttcctattaattcgcatggtgaat 665
              |||||||||||||||||||||||||||||||||||||||||
Sbjct: 143475 tggcggctatatgggtcttcctattaattcgcatggtgaat 143515



 Score =  246 bits (124), Expect = 8e-62
 Identities = 143/148 (96%), Gaps = 1/148 (0%)
 Strand = Plus / Plus

                                                                          
Query: 20     gatggtcc-gaacacacaagtttgtatctagatgcacaaagtgcaagctccaaaacactc 78
              |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 135155 gatggtccagaacacacaagtttgtatctacatgcacaaagtgcaagctccaaaacactc 135214

                                                                          
Query: 79     gaaacgccaaatggtctacaagacaataaggtccattattacaggttggttggtccataa 138
              ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 135215 gaaacaccaaatggtctacaagacaataaggtccatgattacaggttggttggtccataa 135274

                                          
Query: 139    acgctagagagtcatcatgtccatgtgc 166
              ||||| ||||||||||||||||||||||
Sbjct: 135275 acgctggagagtcatcatgtccatgtgc 135302



 Score =  246 bits (124), Expect = 8e-62
 Identities = 143/148 (96%), Gaps = 1/148 (0%)
 Strand = Plus / Plus

                                                                         
Query: 20    gatggtcc-gaacacacaagtttgtatctagatgcacaaagtgcaagctccaaaacactc 78
             |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 95442 gatggtccagaacacacaagtttgtatctacatgcacaaagtgcaagctccaaaacactc 95501

                                                                         
Query: 79    gaaacgccaaatggtctacaagacaataaggtccattattacaggttggttggtccataa 138
             ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 95502 gaaacaccaaatggtctacaagacaataaggtccatgattacaggttggttggtccataa 95561

                                         
Query: 139   acgctagagagtcatcatgtccatgtgc 166
             ||||| ||||||||||||||||||||||
Sbjct: 95562 acgctggagagtcatcatgtccatgtgc 95589



 Score =  188 bits (95), Expect = 2e-44
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                          
Query: 173    taccggcattcaccccattgatatcctctgtgagaatgagatcaggcgatgcatcaaaat 232
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136018 taccggcattcaccccattgatatcctctgtgagaatgagatcaggcgatgcatcaaaat 136077

                                                 
Query: 233    cactatgcccaatcaccgagaacaaaatctcttcc 267
              |||||||||||||||||||||||||||||||||||
Sbjct: 136078 cactatgcccaatcaccgagaacaaaatctcttcc 136112



 Score =  188 bits (95), Expect = 2e-44
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                         
Query: 173   taccggcattcaccccattgatatcctctgtgagaatgagatcaggcgatgcatcaaaat 232
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96305 taccggcattcaccccattgatatcctctgtgagaatgagatcaggcgatgcatcaaaat 96364

                                                
Query: 233   cactatgcccaatcaccgagaacaaaatctcttcc 267
             |||||||||||||||||||||||||||||||||||
Sbjct: 96365 cactatgcccaatcaccgagaacaaaatctcttcc 96399
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>ref|NM_188205.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 633

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                       
Query: 187 ccattgatatcctctgtgagaatgagatcaggcgatgcatcaaaatcactatgcccaatc 246
           ||||||| |||||| || || ||||||||||| |  |||||||||||||| |||||||||
Sbjct: 611 ccattgaaatcctccgtcaggatgagatcaggagcagcatcaaaatcactgtgcccaatc 552

                          
Query: 247 accgagaacaaaatc 261
           |||||||||||||||
Sbjct: 551 accgagaacaaaatc 537
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 67/75 (89%)
 Strand = Plus / Plus

                                                                            
Query: 187      ccattgatatcctctgtgagaatgagatcaggcgatgcatcaaaatcactatgcccaatc 246
                ||||||| |||||| || || ||||||||||| |  |||||||||||||| |||||||||
Sbjct: 13229181 ccattgaaatcctccgtcaggatgagatcaggagcagcatcaaaatcactgtgcccaatc 13229240

                               
Query: 247      accgagaacaaaatc 261
                |||||||||||||||
Sbjct: 13229241 accgagaacaaaatc 13229255
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>dbj|AP005168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0066B06
          Length = 154025

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 67/75 (89%)
 Strand = Plus / Plus

                                                                          
Query: 187    ccattgatatcctctgtgagaatgagatcaggcgatgcatcaaaatcactatgcccaatc 246
              ||||||| |||||| || || ||||||||||| |  |||||||||||||| |||||||||
Sbjct: 147508 ccattgaaatcctccgtcaggatgagatcaggagcagcatcaaaatcactgtgcccaatc 147567

                             
Query: 247    accgagaacaaaatc 261
              |||||||||||||||
Sbjct: 147568 accgagaacaaaatc 147582
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>dbj|AP004264.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0025D09
          Length = 142593

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 67/75 (89%)
 Strand = Plus / Plus

                                                                         
Query: 187   ccattgatatcctctgtgagaatgagatcaggcgatgcatcaaaatcactatgcccaatc 246
             ||||||| |||||| || || ||||||||||| |  |||||||||||||| |||||||||
Sbjct: 17044 ccattgaaatcctccgtcaggatgagatcaggagcagcatcaaaatcactgtgcccaatc 17103

                            
Query: 247   accgagaacaaaatc 261
             |||||||||||||||
Sbjct: 17104 accgagaacaaaatc 17118
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>dbj|AK120134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027E07, full
           insert sequence
          Length = 3987

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                       
Query: 187 ccattgatatcctctgtgagaatgagatcaggcgatgcatcaaaatcactatgcccaatc 246
           ||||||| |||||| || || ||||||||||| |  |||||||||||||| |||||||||
Sbjct: 667 ccattgaaatcctccgtcaggatgagatcaggagcagcatcaaaatcactgtgcccaatc 608

                          
Query: 247 accgagaacaaaatc 261
           |||||||||||||||
Sbjct: 607 accgagaacaaaatc 593
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>dbj|AP004336.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0498D08, complete sequence
          Length = 53801

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 67/75 (89%)
 Strand = Plus / Plus

                                                                         
Query: 187   ccattgatatcctctgtgagaatgagatcaggcgatgcatcaaaatcactatgcccaatc 246
             ||||||| |||||| || || ||||||||||| |  |||||||||||||| |||||||||
Sbjct: 45503 ccattgaaatcctccgtcaggatgagatcaggagcagcatcaaaatcactgtgcccaatc 45562

                            
Query: 247   accgagaacaaaatc 261
             |||||||||||||||
Sbjct: 45563 accgagaacaaaatc 45577
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>emb|AL929596.11| Zebrafish DNA sequence from clone DKEY-53H9, complete sequence
          Length = 191874

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 311    tctcaaagtgtttctttgagcat 333
              |||||||||||||||||||||||
Sbjct: 190992 tctcaaagtgtttctttgagcat 191014
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>emb|BX088601.12| Zebrafish DNA sequence from clone DKEY-221L8, complete sequence
          Length = 33467

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 311  tctcaaagtgtttctttgagcat 333
            |||||||||||||||||||||||
Sbjct: 1118 tctcaaagtgtttctttgagcat 1140
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>emb|AL928658.6| Mouse DNA sequence from clone RP23-238A18 on chromosome 2, complete
             sequence
          Length = 220679

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 579   atgcacaagctacactccgtgt 600
             ||||||||||||||||||||||
Sbjct: 16106 atgcacaagctacactccgtgt 16085
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>gb|AY387697.1| Caenorhabditis elegans SOL-1 (sol-1) mRNA, complete cds
          Length = 1785

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 259 atctcttccaacgaaatgtca 279
           |||||||||||||||||||||
Sbjct: 933 atctcttccaacgaaatgtca 953
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>emb|BX004847.31| Zebrafish DNA sequence from clone CH211-59C8 in linkage group 21,
             complete sequence
          Length = 179765

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 385   ttcaagagaaaatgtgcaata 405
             |||||||||||||||||||||
Sbjct: 90801 ttcaagagaaaatgtgcaata 90781
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>emb|Z79694.1|CEC15A11 Caenorhabditis elegans Cosmid C15A11, complete sequence
          Length = 41954

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 259  atctcttccaacgaaatgtca 279
            |||||||||||||||||||||
Sbjct: 9184 atctcttccaacgaaatgtca 9164
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>emb|BX004997.17| Zebrafish DNA sequence from clone DKEY-46E6 in linkage group 7,
             complete sequence
          Length = 200556

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 373   aatttgagaatgttcaagaga 393
             |||||||||||||||||||||
Sbjct: 22688 aatttgagaatgttcaagaga 22708
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>emb|AL138664.1|ATT5C2 Arabidopsis thaliana DNA chromosome 3, BAC clone T5C2
          Length = 103098

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 363   aagattatcaaatttgagaat 383
             |||||||||||||||||||||
Sbjct: 71158 aagattatcaaatttgagaat 71138
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>ref|XM_690681.1| PREDICTED: Danio rerio similar to delangin isoform A (LOC567386),
            mRNA
          Length = 3334

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 518  gaccgacatcatctacaaaaa 538
            |||||||||||||||||||||
Sbjct: 3051 gaccgacatcatctacaaaaa 3071
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>emb|BX649598.17| Zebrafish DNA sequence from clone CH211-214P12 in linkage group 18,
             complete sequence
          Length = 213741

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 461   tagctaaagaactgttttggt 481
             |||||||||||||||||||||
Sbjct: 11648 tagctaaagaactgttttggt 11668
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>ref|NM_059687.4| Caenorhabditis elegans Suppressor Of Lurcher movement defect family
           member (sol-1) (sol-1) mRNA, complete cds
          Length = 1838

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 259 atctcttccaacgaaatgtca 279
           |||||||||||||||||||||
Sbjct: 968 atctcttccaacgaaatgtca 988
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>emb|BX005336.10| Zebrafish DNA sequence from clone DKEY-85K7 in linkage group 7,
             complete sequence
          Length = 233826

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 373   aatttgagaatgttcaagaga 393
             |||||||||||||||||||||
Sbjct: 34388 aatttgagaatgttcaagaga 34408
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>gb|AC068943.4| Homo sapiens BAC clone RP11-769M2 from 2, complete sequence
          Length = 72719

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 300   atttgtcttcttctcaaagtg 320
             |||||||||||||||||||||
Sbjct: 49402 atttgtcttcttctcaaagtg 49382
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>emb|BX470162.9| Zebrafish DNA sequence from clone CH211-216L23 in linkage group 18,
             complete sequence
          Length = 215723

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 461   tagctaaagaactgttttggt 481
             |||||||||||||||||||||
Sbjct: 50420 tagctaaagaactgttttggt 50440
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>gb|CP000226.1| Drosophila melanogaster genomic scaffold 211000022280776
          Length = 277780

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 58    agtgcaagctccaaaacactc 78
             |||||||||||||||||||||
Sbjct: 88698 agtgcaagctccaaaacactc 88718
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>gb|AC161416.2| Mus musculus BAC clone RP23-306A2 from chromosome 1, complete sequence
          Length = 196764

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 371    caaatttgagaatgttcaag 390
              ||||||||||||||||||||
Sbjct: 117489 caaatttgagaatgttcaag 117470
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>gb|AC094830.5| Rattus norvegicus 8 BAC CH230-3H18 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 237199

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 306    cttcttctcaaagtgtttctttga 329
              ||||||||||||||||||| ||||
Sbjct: 163512 cttcttctcaaagtgtttccttga 163535
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>gb|AC166157.5| Mus musculus BAC clone RP24-193D9 from chromosome 1, complete sequence
          Length = 160305

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 371    caaatttgagaatgttcaag 390
              ||||||||||||||||||||
Sbjct: 159046 caaatttgagaatgttcaag 159065
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>gb|AC115116.6| Mus musculus BAC clone RP23-62I3 from chromosome 1, complete sequence
          Length = 231896

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     aaagtgcaagctccaaaaca 75
              ||||||||||||||||||||
Sbjct: 150469 aaagtgcaagctccaaaaca 150488
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>emb|AJ012386.1|LMO012386 Listeria monocytogenes inlG gene, partial
          Length = 2474

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tgaataatttagaagtaaca 363
           ||||||||||||||||||||
Sbjct: 569 tgaataatttagaagtaaca 588
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>emb|BX572077.7| Zebrafish DNA sequence from clone DKEY-103G5 in linkage group 15,
              complete sequence
          Length = 213513

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 568    ccatgggacaaatgcacaag 587
              ||||||||||||||||||||
Sbjct: 185006 ccatgggacaaatgcacaag 185025
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>emb|AL929088.23| Mouse DNA sequence from clone RP23-360J2 on chromosome 2, complete
             sequence
          Length = 77156

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 375   tttgagaatgttcaagagaaaatg 398
             |||||||||||| |||||||||||
Sbjct: 38238 tttgagaatgtttaagagaaaatg 38215
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>gb|AC132381.4| Mus musculus BAC clone RP23-424F5 from chromosome 1, complete sequence
          Length = 207002

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 568   ccatgggacaaatgcacaag 587
             ||||||||||||||||||||
Sbjct: 64426 ccatgggacaaatgcacaag 64407
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>emb|AL845356.8| Mouse DNA sequence from clone RP23-29O14 on chromosome 2, complete
             sequence
          Length = 141599

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 385   ttcaagagaaaatgtgcaat 404
             ||||||||||||||||||||
Sbjct: 18360 ttcaagagaaaatgtgcaat 18379
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>gb|DQ302693.1| Listeria monocytogenes strain FSLF2723 internalin F (inlF) gene,
           partial cds
          Length = 2460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tgaataatttagaagtaaca 363
           ||||||||||||||||||||
Sbjct: 566 tgaataatttagaagtaaca 585
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>gb|DQ302692.1| Listeria monocytogenes strain FSLF2640 internalin F (inlF) gene,
           partial cds
          Length = 2460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tgaataatttagaagtaaca 363
           ||||||||||||||||||||
Sbjct: 566 tgaataatttagaagtaaca 585
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>gb|DQ302691.1| Listeria monocytogenes strain FSLF2373 internalin F (inlF) gene,
           partial cds
          Length = 2460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tgaataatttagaagtaaca 363
           ||||||||||||||||||||
Sbjct: 566 tgaataatttagaagtaaca 585
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>gb|DQ302688.1| Listeria monocytogenes strain FSLS6072 internalin F (inlF) gene,
           partial cds
          Length = 2460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tgaataatttagaagtaaca 363
           ||||||||||||||||||||
Sbjct: 566 tgaataatttagaagtaaca 585
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>gb|DQ302687.1| Listeria monocytogenes strain FSLS4887 internalin F (inlF) gene,
           partial cds
          Length = 2460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tgaataatttagaagtaaca 363
           ||||||||||||||||||||
Sbjct: 566 tgaataatttagaagtaaca 585
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>gb|DQ302686.1| Listeria monocytogenes strain FSLS4880 internalin F (inlF) gene,
           partial cds
          Length = 2460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tgaataatttagaagtaaca 363
           ||||||||||||||||||||
Sbjct: 566 tgaataatttagaagtaaca 585
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>gb|DQ302685.1| Listeria monocytogenes strain FSLS4821 internalin F (inlF) gene,
           partial cds
          Length = 2460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tgaataatttagaagtaaca 363
           ||||||||||||||||||||
Sbjct: 566 tgaataatttagaagtaaca 585
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>gb|DQ302684.1| Listeria monocytogenes strain FSLS4766 internalin F (inlF) gene,
           partial cds
          Length = 2460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tgaataatttagaagtaaca 363
           ||||||||||||||||||||
Sbjct: 566 tgaataatttagaagtaaca 585
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>gb|DQ302683.1| Listeria monocytogenes strain FSLS4497 internalin F (inlF) gene,
           partial cds
          Length = 2460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tgaataatttagaagtaaca 363
           ||||||||||||||||||||
Sbjct: 566 tgaataatttagaagtaaca 585
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>gb|DQ302682.1| Listeria monocytogenes strain FSLS4304 internalin F (inlF) gene,
           partial cds
          Length = 2460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tgaataatttagaagtaaca 363
           ||||||||||||||||||||
Sbjct: 566 tgaataatttagaagtaaca 585
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>gb|DQ302681.1| Listeria monocytogenes strain FSLS4295 internalin F (inlF) gene,
           partial cds
          Length = 2460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tgaataatttagaagtaaca 363
           ||||||||||||||||||||
Sbjct: 566 tgaataatttagaagtaaca 585
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>gb|DQ302680.1| Listeria monocytogenes strain FSLN4292 internalin F (inlF) gene,
           partial cds
          Length = 2460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tgaataatttagaagtaaca 363
           ||||||||||||||||||||
Sbjct: 566 tgaataatttagaagtaaca 585
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>gb|DQ302678.1| Listeria monocytogenes strain FSLF2663 internalin F (inlF) gene,
           partial cds
          Length = 2460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tgaataatttagaagtaaca 363
           ||||||||||||||||||||
Sbjct: 566 tgaataatttagaagtaaca 585
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>gb|DQ302677.1| Listeria monocytogenes strain FSLF2639 internalin F (inlF) gene,
           partial cds
          Length = 2460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tgaataatttagaagtaaca 363
           ||||||||||||||||||||
Sbjct: 566 tgaataatttagaagtaaca 585
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>gb|DQ302676.1| Listeria monocytogenes strain FSLF2634 internalin F (inlF) gene,
           partial cds
          Length = 2460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tgaataatttagaagtaaca 363
           ||||||||||||||||||||
Sbjct: 566 tgaataatttagaagtaaca 585
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>gb|DQ302675.1| Listeria monocytogenes strain FSLF2590 internalin F (inlF) gene,
           partial cds
          Length = 2460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tgaataatttagaagtaaca 363
           ||||||||||||||||||||
Sbjct: 566 tgaataatttagaagtaaca 585
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>gb|DQ302674.1| Listeria monocytogenes strain FSLF2515 internalin F (inlF) gene,
           partial cds
          Length = 2460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tgaataatttagaagtaaca 363
           ||||||||||||||||||||
Sbjct: 566 tgaataatttagaagtaaca 585
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>gb|DQ302673.1| Listeria monocytogenes strain FSLE1123 internalin F (inlF) gene,
           partial cds
          Length = 2460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tgaataatttagaagtaaca 363
           ||||||||||||||||||||
Sbjct: 566 tgaataatttagaagtaaca 585
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>emb|AL591975.1| Listeria monocytogenes strain EGD, complete genome, segment 3/12
          Length = 280050

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   tgaataatttagaagtaaca 363
             ||||||||||||||||||||
Sbjct: 70198 tgaataatttagaagtaaca 70217
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>gb|U77367.1|LMU77367 Listeria monocytogenes internalin (inlF) gene, complete cds
          Length = 2991

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tgaataatttagaagtaaca 363
           ||||||||||||||||||||
Sbjct: 941 tgaataatttagaagtaaca 960


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,591,188
Number of Sequences: 3902068
Number of extensions: 5591188
Number of successful extensions: 101322
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101185
Number of HSP's gapped (non-prelim): 137
length of query: 665
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 642
effective length of database: 17,143,297,704
effective search space: 11005997125968
effective search space used: 11005997125968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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