ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18k22 |
|---|---|
| Clone Library Name | barley_pub |
>PMA1_WHEAT (P83970) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| Length = 951 Score = 194 bits (494), Expect = 2e-49 Identities = 97/97 (100%), Positives = 97/97 (100%) Frame = -3 Query: 657 QNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKR 478 QNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKR Sbjct: 855 QNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKR 914 Query: 477 RAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 367 RAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV Sbjct: 915 RAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 951
>PMA4_NICPL (Q03194) Plasma membrane ATPase 4 (EC 3.6.3.6) (Proton pump 4)| Length = 952 Score = 154 bits (390), Expect = 2e-37 Identities = 79/96 (82%), Positives = 88/96 (91%) Frame = -3 Query: 654 NKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRR 475 NKTAFTTK++YGK EREAQWA AQRTLHGLQ PE + LFN+K+SYRELSEIAEQAKRR Sbjct: 859 NKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPEATN--LFNEKNSYRELSEIAEQAKRR 916 Query: 474 AEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 367 AE+ARLREL+TLKGHVESVVKLKGLDI+TI Q+YTV Sbjct: 917 AEMARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 952
>PMA5_ARATH (Q9SJB3) ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump 5)| Length = 948 Score = 150 bits (380), Expect = 2e-36 Identities = 75/97 (77%), Positives = 86/97 (88%) Frame = -3 Query: 657 QNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKR 478 +NKTAFTTK++YGK EREAQWA AQRTLHGLQ E + +FN+K+SY ELS+IAEQAKR Sbjct: 854 ENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPAE--KNNIFNEKNSYSELSQIAEQAKR 911 Query: 477 RAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 367 RAE+ RLRE+NTLKGHVESVVKLKGLDIDTI Q+YTV Sbjct: 912 RAEVVRLREINTLKGHVESVVKLKGLDIDTIQQHYTV 948
>PMA6_ARATH (Q9SH76) ATPase 6, plasma membrane-type (EC 3.6.3.6) (Proton pump 6)| Length = 949 Score = 146 bits (369), Expect = 5e-35 Identities = 71/97 (73%), Positives = 87/97 (89%) Frame = -3 Query: 657 QNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKR 478 +N+TAFTTK++YG+GEREAQWA AQRTLHGL+ PE ++F D ++Y ELSEIAEQAK+ Sbjct: 857 ENRTAFTTKKDYGRGEREAQWALAQRTLHGLKPPE----SMFEDTATYTELSEIAEQAKK 912 Query: 477 RAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 367 RAE+ARLRE++TLKGHVESVVKLKGLDID +NQ+YTV Sbjct: 913 RAEVARLREVHTLKGHVESVVKLKGLDIDNLNQHYTV 949
>PMA9_ARATH (Q42556) ATPase 9, plasma membrane-type (EC 3.6.3.6) (Proton pump 9)| Length = 954 Score = 145 bits (366), Expect = 1e-34 Identities = 72/97 (74%), Positives = 86/97 (88%) Frame = -3 Query: 657 QNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKR 478 +NKTAFT+K++YGKGEREAQWA AQRTLHGLQ + + +FNDKS+YRELSEIA+QAKR Sbjct: 860 ENKTAFTSKKDYGKGEREAQWAQAQRTLHGLQPAQTSD--MFNDKSTYRELSEIADQAKR 917 Query: 477 RAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 367 RAE+ARLRE +TLKGHVESVVK KGLDI+ I Q+YT+ Sbjct: 918 RAEVARLRERHTLKGHVESVVKQKGLDIEAIQQHYTL 954
>PMA1_ARATH (P20649) ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1)| Length = 948 Score = 143 bits (361), Expect = 4e-34 Identities = 74/96 (77%), Positives = 82/96 (85%) Frame = -3 Query: 654 NKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRR 475 N+TAFTTK++YG GEREAQWA AQRTLHGLQ E + +F +K SYRELSEIAEQAKRR Sbjct: 855 NRTAFTTKKDYGIGEREAQWAQAQRTLHGLQPKEDVN--IFPEKGSYRELSEIAEQAKRR 912 Query: 474 AEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 367 AEIARLREL+TLKGHVESV KLKGLDIDT +YTV Sbjct: 913 AEIARLRELHTLKGHVESVAKLKGLDIDTAGHHYTV 948
>PMA8_ARATH (Q9M2A0) ATPase 8, plasma membrane-type (EC 3.6.3.6) (Proton pump 8)| Length = 948 Score = 142 bits (358), Expect = 9e-34 Identities = 75/95 (78%), Positives = 82/95 (86%) Frame = -3 Query: 651 KTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRA 472 KTAFTTK++YGKGEREAQWA AQRTLHGL PE +FND + ELSEIAEQAKRRA Sbjct: 860 KTAFTTKKDYGKGEREAQWALAQRTLHGLPPPE----AMFNDNKN--ELSEIAEQAKRRA 913 Query: 471 EIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 367 E+ARLREL+TLKGHVESVVKLKGLDIDTI Q+YTV Sbjct: 914 EVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 948
>PMA2_ARATH (P19456) ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump 2)| Length = 947 Score = 138 bits (347), Expect = 2e-32 Identities = 74/97 (76%), Positives = 83/97 (85%) Frame = -3 Query: 657 QNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKR 478 +NKTAFT K++YGK EREAQWA AQRTLHGLQ E + +F +K SYRELSEIAEQAKR Sbjct: 854 ENKTAFTMKKDYGKEEREAQWALAQRTLHGLQPKEAVN--IFPEKGSYRELSEIAEQAKR 911 Query: 477 RAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 367 RAEIARLREL+TLKGHVESVVKLKGLDI+T +YTV Sbjct: 912 RAEIARLRELHTLKGHVESVVKLKGLDIET-PSHYTV 947
>PMA3_ARATH (P20431) ATPase 3, plasma membrane-type (EC 3.6.3.6) (Proton pump 3)| Length = 948 Score = 131 bits (329), Expect = 2e-30 Identities = 71/96 (73%), Positives = 80/96 (83%) Frame = -3 Query: 654 NKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRR 475 N+TAFTTK+NYG EREAQWA AQRTLHGLQ E A+ + ++ YRELSEIA QAKRR Sbjct: 856 NRTAFTTKQNYGIEEREAQWAHAQRTLHGLQNTETAN--VVPERGGYRELSEIANQAKRR 913 Query: 474 AEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 367 AEIARLREL+TLKGHVESVVKLKGLDI+T +YTV Sbjct: 914 AEIARLRELHTLKGHVESVVKLKGLDIETAG-HYTV 948
>PMA3_NICPL (Q08436) Plasma membrane ATPase 3 (EC 3.6.3.6) (Proton pump 3)| Length = 956 Score = 129 bits (325), Expect = 6e-30 Identities = 63/97 (64%), Positives = 82/97 (84%) Frame = -3 Query: 657 QNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKR 478 + + AFT K+++GK +RE QWA AQRTLHGLQ P+P +F++ +++ EL+++AE+AKR Sbjct: 863 EQRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDPK---IFSETTNFNELNQLAEEAKR 919 Query: 477 RAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 367 RAEIARLREL+TLKGHVESVVKLKGLDI+TI Q YTV Sbjct: 920 RAEIARLRELHTLKGHVESVVKLKGLDIETIQQAYTV 956
>PMA1_LYCES (P22180) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 956 Score = 129 bits (323), Expect = 1e-29 Identities = 63/97 (64%), Positives = 82/97 (84%) Frame = -3 Query: 657 QNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKR 478 + + AFT K+++GK RE QWA AQRTLHGLQ P+P +F++ +++ EL+++AE+AKR Sbjct: 863 EQRIAFTRKKDFGKELRELQWAHAQRTLHGLQVPDPK---IFSETTNFNELNQLAEEAKR 919 Query: 477 RAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 367 RAEIARLREL+TLKGHVESVVKLKGLDI+TI Q+YTV Sbjct: 920 RAEIARLRELHTLKGHVESVVKLKGLDIETIQQSYTV 956
>PMA1_NICPL (Q08435) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 957 Score = 127 bits (319), Expect = 3e-29 Identities = 63/97 (64%), Positives = 81/97 (83%) Frame = -3 Query: 657 QNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKR 478 + + AFT K+++GK +RE QWA AQRTLHGLQ P+ LF++ +++ EL+++AE+AKR Sbjct: 864 ERRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDTK---LFSEATNFNELNQLAEEAKR 920 Query: 477 RAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 367 RAEIARLREL+TLKGHVESVVKLKGLDI+TI Q YTV Sbjct: 921 RAEIARLRELHTLKGHVESVVKLKGLDIETIQQAYTV 957
>PMA11_ARATH (Q9LV11) ATPase 11, plasma membrane-type (EC 3.6.3.6) (Proton pump| 11) Length = 956 Score = 125 bits (315), Expect = 9e-29 Identities = 62/97 (63%), Positives = 81/97 (83%) Frame = -3 Query: 657 QNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKR 478 + + AFT ++++GK +RE QWA AQRTLHGLQAP+ +F +++ + ELS++AE+AKR Sbjct: 863 EQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDAK---MFPERTHFNELSQMAEEAKR 919 Query: 477 RAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 367 RAEIARLREL+TLKGHVESVV+LKGLDI+TI Q YTV Sbjct: 920 RAEIARLRELHTLKGHVESVVRLKGLDIETIQQAYTV 956
>PMA2_LYCES (P23980) Plasma membrane ATPase 2 (EC 3.6.3.6) (Proton pump 2)| (Fragment) Length = 704 Score = 125 bits (314), Expect = 1e-28 Identities = 62/97 (63%), Positives = 81/97 (83%) Frame = -3 Query: 657 QNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKR 478 + + AFT K+++GK +RE QWA AQRTLHGLQ P+ LF++ +++ EL+++AE+AKR Sbjct: 611 EQRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDIK---LFSEATNFNELNQLAEEAKR 667 Query: 477 RAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 367 RAEIAR REL+TLKGHVESVVKLKGLDI+TI Q+YTV Sbjct: 668 RAEIARQRELHTLKGHVESVVKLKGLDIETIQQSYTV 704
>PMA4_ARATH (Q9SU58) ATPase 4, plasma membrane-type (EC 3.6.3.6) (Proton pump 4)| Length = 960 Score = 125 bits (313), Expect = 1e-28 Identities = 62/97 (63%), Positives = 80/97 (82%) Frame = -3 Query: 657 QNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKR 478 + + AFT ++++GK +RE QWA AQRTLHGLQAP+ +F D++ EL+++AE+AKR Sbjct: 867 EQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDTK---MFTDRTHVSELNQMAEEAKR 923 Query: 477 RAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 367 RAEIARLREL+TLKGHVESVV+LKGLDI+TI Q YTV Sbjct: 924 RAEIARLRELHTLKGHVESVVRLKGLDIETIQQAYTV 960
>PMA7_ARATH (Q9LY32) ATPase 7, plasma membrane-type (EC 3.6.3.6) (Proton pump 7)| Length = 961 Score = 95.1 bits (235), Expect = 2e-19 Identities = 50/98 (51%), Positives = 69/98 (70%), Gaps = 1/98 (1%) Frame = -3 Query: 657 QNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKR 478 + +TA T K+N+G+ ER A WAT +RT HGL+ + + +++S EL+ +AE+AKR Sbjct: 868 EGRTALTGKKNFGQEERMAAWATEKRTQHGLETGQKPVY----ERNSATELNNMAEEAKR 923 Query: 477 RAEIARLRELNTLKGHVESVVKLKGLDIDTIN-QNYTV 367 RAEIAR+REL TLKG VES KLKG D++ N NYT+ Sbjct: 924 RAEIARMRELQTLKGKVESAAKLKGYDLEDPNSNNYTI 961
>PMA10_ARATH (Q43128) ATPase 10, plasma membrane-type (EC 3.6.3.6) (Proton pump| 10) Length = 947 Score = 59.7 bits (143), Expect = 8e-09 Identities = 38/95 (40%), Positives = 53/95 (55%) Frame = -3 Query: 651 KTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRA 472 KTAFT K++YGK + +QR S + + S S IAEQ +RRA Sbjct: 864 KTAFTYKKDYGKDDGSPNVTISQR-----------SRSAEELRGSRSRASWIAEQTRRRA 912 Query: 471 EIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 367 EIARL E++++ H+ESV+KLK +D I +TV Sbjct: 913 EIARLLEVHSVSRHLESVIKLKQIDQRMIRAAHTV 947
>PMA_AVESA (Q7M290) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| (Fragments) Length = 110 Score = 43.9 bits (102), Expect = 4e-04 Identities = 26/38 (68%), Positives = 27/38 (71%) Frame = -3 Query: 594 ATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 481 A A +TLHGLQAPE S L NDK ELSEIAEQAK Sbjct: 77 APALKTLHGLQAPESTSLNLPNDK----ELSEIAEQAK 110
>CING_HUMAN (Q9P2M7) Cingulin| Length = 1197 Score = 43.9 bits (102), Expect = 4e-04 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 3/81 (3%) Frame = -3 Query: 606 EAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAE---IARLRELNTLK 436 E Q Q L +Q PEPA L D REL E + K+R E R REL LK Sbjct: 436 ETQVMELQNKLKHVQGPEPAKEVLLKDLLETRELLEEVLEGKQRVEEQLRLRERELTALK 495 Query: 435 GHVESVVKLKGLDIDTINQNY 373 G ++ V + +++ + Q Y Sbjct: 496 GALKEEVASRDQEVEHVRQQY 516
>CING_MOUSE (P59242) Cingulin| Length = 1191 Score = 34.3 bits (77), Expect = 0.34 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Frame = -3 Query: 606 EAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAE---IARLRELNTLK 436 EAQ Q L Q+P+ +L D REL E + K+R E R REL LK Sbjct: 430 EAQVKELQLKLKHSQSPDSGKESLLKDLLDTRELLEELLEGKQRVEEQLRLRERELTALK 489 Query: 435 GHVESVVKLKGLDIDTINQNY 373 G ++ V +++ + Y Sbjct: 490 GALKEEVASHDQEVEHVRLQY 510
>ASPP2_HUMAN (Q13625) Apoptosis-stimulating of p53 protein 2 (Tumor suppressor| p53-binding protein 2) (p53-binding protein 2) (p53BP2) (53BP2) (Bcl2-binding protein) (Bbp) (NY-REN-51 antigen) Length = 1128 Score = 30.4 bits (67), Expect = 4.9 Identities = 20/72 (27%), Positives = 34/72 (47%) Frame = -3 Query: 594 ATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVV 415 AT ++ L L+ + ++ + L EIAE + A+L+++ LKGHVE Sbjct: 150 ATKEQRLKFLKQQDQRQQQQVAEQEKLKRLKEIAENQE-----AKLKKVRALKGHVEQKR 204 Query: 414 KLKGLDIDTINQ 379 G ++ I Q Sbjct: 205 LSNGKLVEEIEQ 216
>RSRC1_MOUSE (Q9DBU6) Arginine/serine-rich coiled coil protein 1| Length = 334 Score = 30.0 bits (66), Expect = 6.4 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Frame = -3 Query: 657 QNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYREL-SEIAEQAK 481 + K + + GK R + + RT P P SH+ +++SS+R S ++ + Sbjct: 79 RRKRSRSRSRGRGKPYRVQRSRSKSRTRRSRSRPRPRSHSRSSERSSHRRTRSRSRDRDR 138 Query: 480 RRAEIARLRELNTLKGHVESVVKLKGLDIDTI 385 R+ RE KG + V +K D I Sbjct: 139 RKVRDKEKREKEKDKGKDKEVHSIKRGDSGNI 170
>GCM2_MOUSE (O09102) Chorion-specific transcription factor GCMb (Glial cells| missing homolog 2) (GCM motif protein 2) (mGCMb) Length = 504 Score = 30.0 bits (66), Expect = 6.4 Identities = 15/61 (24%), Positives = 28/61 (45%) Frame = -3 Query: 576 LHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLD 397 +H PE S T + R+++ + KRR+E R ++GH+ S L+ + Sbjct: 156 VHDHPRPESKSETEGRRSALKRQMASFYQPQKRRSEEPEARSTQDIRGHLNSTAALEPTE 215 Query: 396 I 394 + Sbjct: 216 L 216
>SMG_DROME (Q23972) Protein Smaug| Length = 999 Score = 30.0 bits (66), Expect = 6.4 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -2 Query: 382 PKLHRVRNLGIGPNNMTSVLERDWNG 305 PK+H V+ G+GPNN ++ + WNG Sbjct: 769 PKMHHVKPAGVGPNN-GNINKPRWNG 793
>RNH2_SYNP7 (Q31PW0) Ribonuclease HII (EC 3.1.26.4) (RNase HII)| Length = 215 Score = 29.6 bits (65), Expect = 8.3 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = -1 Query: 608 GRHSGLPHREHSMAFKHLSRLPTHSSTTRAATVSFLRSLSKPREELRL 465 GRH G +H A L P H + FLRSL +P +++ L Sbjct: 174 GRHKGYGTAQHRQAILQLGPTPLH-------RIRFLRSLRQPSQQIDL 214
>RNH2_SYNP6 (Q5N4B8) Ribonuclease HII (EC 3.1.26.4) (RNase HII)| Length = 215 Score = 29.6 bits (65), Expect = 8.3 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = -1 Query: 608 GRHSGLPHREHSMAFKHLSRLPTHSSTTRAATVSFLRSLSKPREELRL 465 GRH G +H A L P H + FLRSL +P +++ L Sbjct: 174 GRHKGYGTAQHRQAILQLGPTPLH-------RIRFLRSLRQPSQQIDL 214
>TIM_MOUSE (Q9R1X4) Timeless homolog (mTim)| Length = 1197 Score = 29.6 bits (65), Expect = 8.3 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 5/47 (10%) Frame = -2 Query: 424 VRGEAQGP*HRHHQPKLH-----RVRNLGIGPNNMTSVLERDWNGAP 299 V GE QGP H L R R G+GP + E +WN AP Sbjct: 1112 VPGE-QGPSEEHRTEALRALLSARKRKAGLGPTEEEATGEEEWNSAP 1157
>ASPP2_MOUSE (Q8CG79) Apoptosis-stimulating of p53 protein 2 (Tumor suppressor| p53-binding protein 2) (p53BP2) (53BP2) (Fragment) Length = 1088 Score = 29.6 bits (65), Expect = 8.3 Identities = 20/72 (27%), Positives = 34/72 (47%) Frame = -3 Query: 594 ATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVV 415 AT ++ L L+ + ++ + L EIAE + A+L+++ LKGHVE Sbjct: 110 ATKEQRLKFLKQQDQRQQQQAAEQEKLKRLREIAESQE-----AKLKKVRALKGHVEQKR 164 Query: 414 KLKGLDIDTINQ 379 G ++ I Q Sbjct: 165 LSNGKLVEEIEQ 176
>BRE1_CAEBR (Q60YN5) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) (RING finger| protein rfp-1) Length = 828 Score = 29.6 bits (65), Expect = 8.3 Identities = 20/75 (26%), Positives = 35/75 (46%) Frame = -3 Query: 639 TTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIAR 460 T KE Y K ++++W + T++ L+ +L S + + E+A ++ A Sbjct: 439 TVKEEYNKTVKQSEWDEMKATVNTLR-------SLNKTMKSQMQRMKDREKASQKEHSAV 491 Query: 459 LRELNTLKGHVESVV 415 EL TLK +E V Sbjct: 492 KTELKTLKDQLEKSV 506 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,416,298 Number of Sequences: 219361 Number of extensions: 2019764 Number of successful extensions: 4935 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 4777 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4917 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
