Clone Name | rbasd18k09 |
---|---|
Clone Library Name | barley_pub |
>EI2BD_SCHPO (Q09924) Probable translation initiation factor eIF-2B delta| subunit (eIF-2B GDP-GTP exchange factor) Length = 467 Score = 33.5 bits (75), Expect = 0.45 Identities = 24/85 (28%), Positives = 36/85 (42%) Frame = -3 Query: 358 GSGAAEPGEDGRDQEPAHERSYAPSNGAGPAVAETREAPNSSGLECVPQRFFVSSCVVQL 179 G A + +DG+DQ P E S G PA A + +PN L + + Q Sbjct: 2 GFSAEQAKKDGKDQSPVSESSSV--GGTSPATASSVVSPNEPKLSGKEAK-ALKKARKQA 58 Query: 178 AARGXGDA*EGTGPPGLRKXKCEAL 104 + R +A PPG+ + K A+ Sbjct: 59 SRRAKAEAAAANNPPGVSEEKKVAI 83
>UBP5_HUMAN (P45974) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 32.3 bits (72), Expect = 1.0 Identities = 18/57 (31%), Positives = 25/57 (43%) Frame = +1 Query: 121 TFLGLEVPFLPMHRLSREQRVELRKRKQRNAEERTPVQTSWAPPLSPPPRVRLHWRG 291 TFLG ++ H QRV L R+ R +E P + PP P R+ + G Sbjct: 49 TFLGFGKQYVERHFNKTGQRVYLHLRRTRRPKEEDPATGTGDPPRKKPTRLAIGVEG 105
>LRP10_HUMAN (Q7Z4F1) Low-density lipoprotein receptor-related protein 10| precursor Length = 713 Score = 32.3 bits (72), Expect = 1.0 Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 14/111 (12%) Frame = -3 Query: 421 LINRTGLPVLHTELRFVMEPSGS--------------GAAEPGEDGRDQEPAHERSYAPS 284 L+ RT P +E R + PS + G A G+DG P ++ PS Sbjct: 565 LLPRTNTPARASEARSQVTPSAAPLEALDGGTGPAREGGAVGGQDGEQAPPLPIKAPLPS 624 Query: 283 NGAGPAVAETREAPNSSGLECVPQRFFVSSCVVQLAARGXGDA*EGTGPPG 131 PA EAP L +P + S VVQ A RG GPPG Sbjct: 625 ASTSPAPTTVPEAPGP--LPSLPLEPSLLSGVVQ-ALRGR--LLPSLGPPG 670
>TRFL_CAMDR (Q9TUM0) Lactotransferrin precursor (EC 3.4.21.-) (Lactoferrin)| Length = 708 Score = 31.2 bits (69), Expect = 2.2 Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 2/37 (5%) Frame = -3 Query: 280 GAGPAVAETREAPNSSGLECV--PQRFFVSSCVVQLA 176 G P +AE++++P SSGL+CV P + +++ VV+ A Sbjct: 425 GLVPVLAESQQSPESSGLDCVHRPVKGYLAVAVVRKA 461
>GCFC_HUMAN (Q9Y5B6) GC-rich sequence DNA-binding factor homolog| Length = 917 Score = 30.8 bits (68), Expect = 2.9 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +1 Query: 169 REQRVELRKRKQRNAEERTPVQTSWAPPLSPPP 267 + +RV +RKR EER + PPL PPP Sbjct: 4 KARRVNVRKRNDSEEEERERDEEQEPPPLLPPP 36
>FOXC1_HUMAN (Q12948) Forkhead box protein C1 (Forkhead-related protein FKHL7)| (Forkhead-related transcription factor 3) (FREAC-3) Length = 553 Score = 30.8 bits (68), Expect = 2.9 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = +3 Query: 228 SPDELGASLVSATAGPAPLEGA*ERSWAGSWSRPSSPGSAAPEPDGS 368 SPD +SL S ++ P L A S G+ S P P +AP P S Sbjct: 259 SPDSSSSSLSSGSSPPGSLPSARPLSLDGADSAPPPPAPSAPPPHHS 305
>KDSA_BRAJA (Q89KV0) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)| (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) Length = 282 Score = 30.4 bits (67), Expect = 3.8 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 3/76 (3%) Frame = -3 Query: 421 LINRTGLPVLHTELRFVMEPSGSGAAEPGEDGRDQEPAHERSYAPSNGAGPAVAETREAP 242 L TG PV+ V +P G G + GE R+ P R+ A + G ET P Sbjct: 192 LARTTGAPVIFDATHSVQQPGGKGTSSGGE--REFVPVLARA-AVAVGVAGVFIETHPDP 248 Query: 241 NSS---GLECVPQRFF 203 +S+ G VP R F Sbjct: 249 DSAPSDGPNMVPLREF 264
>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2| Length = 1514 Score = 30.4 bits (67), Expect = 3.8 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = -3 Query: 376 FVMEPSGSGAAEPGEDGRDQEPAHERSYAPSNGAGPAVAETREAPNSS 233 F + SG GA G + P+ SY+P AGP + T + ++S Sbjct: 748 FTSQASGRGARNAGPEPETSRPSPLGSYSPVRSAGPFGSSTDSSASTS 795
>TAF5_MOUSE (Q8C092) Transcription initiation factor TFIID subunit 5| (Transcription initiation factor TFIID 100 kDa subunit) (TAF(II)100) (TAFII-100) (TAFII100) Length = 801 Score = 30.4 bits (67), Expect = 3.8 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%) Frame = +3 Query: 255 VSATAGPAPLEGA*ERSWAGSWSR--PSSPGSAAPEPDGSITNRNSV 389 V+ + P L+GA + + SR S PGSAAPEP G+ + SV Sbjct: 128 VAGSGAPGELDGAGAEAASALLSRVTASVPGSAAPEPPGTGASVTSV 174
>DPCA2_HUMAN (Q86SG4) Dresden prostate carcinoma 2 protein (D-PCa-2)| Length = 172 Score = 30.0 bits (66), Expect = 5.0 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 9/49 (18%) Frame = +1 Query: 172 EQRVELRKRKQRNAEE---------RTPVQTSWAPPLSPPPRVRLHWRG 291 ++R+E+ K +Q EE R P+ +++ PPLS PP R +G Sbjct: 30 QKRIEMHKAEQCEEEEAMTPRPTKARAPLPSAYVPPLSLPPCPRERLKG 78
>ZP1_HUMAN (P60852) Zona pellucida sperm-binding protein 1 precursor (Zona| pellucida glycoprotein 1) (Zp-1) Length = 638 Score = 30.0 bits (66), Expect = 5.0 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +1 Query: 130 GLEVPFLPMHRLSREQRVELRKRKQRNAEERTPVQTSWAPPLSPPP 267 G+ + P ++R+ +L R NA + P+Q S PP SP P Sbjct: 353 GIHIQKGPQGSITRDSTFQLHVRCVFNASDFLPIQASIFPPPSPAP 398
>PIRK5_CHICK (Q5ZIB8) Phosphoinositide 3-kinase regulatory subunit 5 (PI3-kinase| regulatory subunit 5) Length = 881 Score = 30.0 bits (66), Expect = 5.0 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 7/94 (7%) Frame = -3 Query: 571 FRLPVQRAPRQPA----HPGPSPSIGSVPLLQTTTEQTTGRFFQTN*LSEV*REL---IN 413 F +PV+R+ PA HP PSPS + L G TN +S L Sbjct: 565 FYVPVKRSCLLPAALLMHPPPSPSDLQLRALAQAEPTLAGAESSTNDISHYIGMLDPWYE 624 Query: 412 RTGLPVLHTELRFVMEPSGSGAAEPGEDGRDQEP 311 R L +++ + + + S AEP ED R+Q P Sbjct: 625 RNVLGLMNLPMDVLCQ-SAKPEAEPQEDSREQLP 657
>KDSA_RHOPA (P61657) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)| (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) Length = 287 Score = 30.0 bits (66), Expect = 5.0 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Frame = -3 Query: 409 TGLPVLHTELRFVMEPSGSGAAEPGEDGRDQEPAHERSYAPSNGAGPAVAETREAPN--- 239 TG PV+ V +P G G + GE R+ P R+ A + G ET P+ Sbjct: 196 TGAPVIFDATHSVQQPGGKGTSSGGE--REYVPVLARA-AVAVGVAGVFIETHPDPDHAP 252 Query: 238 SSGLECVPQRFF 203 S G VP R F Sbjct: 253 SDGPNMVPLREF 264
>SLA1_YEAST (P32790) Cytoskeleton assembly control protein SLA1| Length = 1244 Score = 29.6 bits (65), Expect = 6.5 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +1 Query: 160 RLSREQRVELRKRKQRNAEERTPVQTSWAPPLSPP 264 RL + EL+K ++ EER+ +Q PP+ PP Sbjct: 592 RLKERELYELKKARELLDEERSRLQEKELPPIKPP 626
>PKNH_MYCTU (Q11053) Probable serine/threonine-protein kinase pknH (EC| 2.7.11.1) Length = 626 Score = 29.6 bits (65), Expect = 6.5 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = -3 Query: 400 PVLHTELRFVMEPSGSGAAEPGEDGRDQEPAHERSYAPSNGAGPAVAET 254 PV ++ +PS + A+PG G+ P + S+AP++G PA T Sbjct: 322 PVTPPGVQPAPKPSYTPPAQPGPAGQRPGPTGQPSWAPNSGPMPASGPT 370
>DOT1L_HUMAN (Q8TEK3) Histone-lysine N-methyltransferase, H3 lysine-79 specific| (EC 2.1.1.43) (Histone H3-K79 methyltransferase) (H3-K79-HMTase) (DOT1-like protein) Length = 1739 Score = 29.6 bits (65), Expect = 6.5 Identities = 17/39 (43%), Positives = 23/39 (58%) Frame = +3 Query: 243 GASLVSATAGPAPLEGA*ERSWAGSWSRPSSPGSAAPEP 359 GA+ SAT GP+PL+ A S A S+ P+S + P P Sbjct: 1558 GAACGSATLGPSPLQAAASAS-ASSFQAPASVETRPPPP 1595
>PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)| Length = 939 Score = 29.6 bits (65), Expect = 6.5 Identities = 29/97 (29%), Positives = 36/97 (37%), Gaps = 9/97 (9%) Frame = -3 Query: 361 SGSGAAEPGEDGRDQEPAHERSYAPSNGAGPAVAETREA--PNSSGLECVPQ-----RFF 203 SG+GA PG +D+ P H AGP + A P S P+ R Sbjct: 105 SGAGADSPGPPRQDRGPLHGAPSTALRPAGPGQGRSSPAWEPRSPRCPSGPEPPEDPRGA 164 Query: 202 VSS--CVVQLAARGXGDA*EGTGPPGLRKXKCEALKP 98 SS L +R G A +G G G K L P Sbjct: 165 RSSQGAACPLMSRPEGKAGDGCGTAGAHKGPPRGLSP 201
>MBA2_ECOLI (P07112) Mobilization protein A| Length = 708 Score = 29.3 bits (64), Expect = 8.5 Identities = 18/45 (40%), Positives = 22/45 (48%) Frame = -3 Query: 343 EPGEDGRDQEPAHERSYAPSNGAGPAVAETREAPNSSGLECVPQR 209 E G+ GR HE A GAG VAE+ AP+ G+ QR Sbjct: 274 EHGDTGRRSPAGHEPDPAGQRGAGGGVAES-PAPDRGGMGGAGQR 317
>NLE1_PONPY (Q5RFF8) Notchless homolog 1| Length = 484 Score = 29.3 bits (64), Expect = 8.5 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +2 Query: 503 RTNGG*RTWVSGLSWGPLDWKPE 571 RT G W++GLSW PL PE Sbjct: 192 RTLAGHSKWITGLSWEPLHANPE 214
>NLE1_MOUSE (Q8VEJ4) Notchless homolog 1| Length = 484 Score = 29.3 bits (64), Expect = 8.5 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +2 Query: 503 RTNGG*RTWVSGLSWGPLDWKPE 571 RT G W++GLSW PL PE Sbjct: 192 RTLTGHSKWITGLSWEPLHMNPE 214
>NLE1_HUMAN (Q9NVX2) Notchless homolog 1| Length = 484 Score = 29.3 bits (64), Expect = 8.5 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +2 Query: 503 RTNGG*RTWVSGLSWGPLDWKPE 571 RT G W++GLSW PL PE Sbjct: 192 RTLAGHSKWITGLSWEPLHANPE 214
>CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor| Length = 1356 Score = 29.3 bits (64), Expect = 8.5 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = -3 Query: 364 PSGSGAAEPGEDGRDQEPAHERSYAPSNGAGPAVAETREAPNSSGL 227 P+GS A +PGEDG + P P + GP R P + GL Sbjct: 128 PTGS-AGKPGEDGNNGRPG-----KPGDRGGPGTQGARGFPGTPGL 167
>CD2L6_HUMAN (Q9BWU1) Cell division cycle 2-like protein kinase 6 (EC 2.7.11.22)| (CDC2-related protein kinase 6) (Death-preventing kinase) (Cyclin-dependent kinase 11) Length = 502 Score = 29.3 bits (64), Expect = 8.5 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 5/54 (9%) Frame = +1 Query: 124 FLGLEVPFLPMHRLSR---EQRVELRKRKQRNAEER--TPVQTSWAPPLSPPPR 270 F G ++P+ L+ E++ + +++Q+N ++ P Q + APP +PPP+ Sbjct: 346 FAGCQIPYPKREFLNEDDPEEKGDKNQQQQQNQHQQPTAPPQQAAAPPQAPPPQ 399 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,115,634 Number of Sequences: 219361 Number of extensions: 1729334 Number of successful extensions: 7683 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 6936 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7661 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)