ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18k03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YPSE_SYNP2 (P31972) Hypothetical 22.7 kDa protein in psaE 5'region 28 8.5
2CTR1_ARATH (Q05609) Serine/threonine-protein kinase CTR1 (EC 2.7... 28 8.5
3BRE1_YEAST (Q07457) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-) (... 28 8.5

>YPSE_SYNP2 (P31972) Hypothetical 22.7 kDa protein in psaE 5'region|
          Length = 205

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 48  LYMFIAAAQRSLRSCEASLAEHPSNGTNLA 137
           LY  ++ A   LRS E +LA HP  GTN++
Sbjct: 91  LYRAVSTAGDRLRSGEWNLAIHPRCGTNIS 120



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>CTR1_ARATH (Q05609) Serine/threonine-protein kinase CTR1 (EC 2.7.11.1)|
          Length = 821

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = -1

Query: 193 PPIIHHDAFVSNAQNDYSHARLVPLEGCSASEASQLLSERWAAAMNMYNDPNDSXDKP 20
           PPI+H D    N   D  +   V   G S  +AS  LS + AA    +  P    D+P
Sbjct: 670 PPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEP 727



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>BRE1_YEAST (Q07457) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-) (Brefeldin|
           A-sensitivity protein 1)
          Length = 700

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -3

Query: 200 EPSSNYPS*CFCQQCSK*LQPCKISTIGRMFCQ*GFTASQ*TLGCCNEHV 51
           E  +N+ +  +C  CSK  +   I T G +FC+           CC E +
Sbjct: 637 EELANFRTLVYCSLCSKNWKNMAIKTCGHVFCE----------NCCKERL 676


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,410,710
Number of Sequences: 219361
Number of extensions: 442545
Number of successful extensions: 1030
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 80,573,946
effective HSP length: 45
effective length of database: 70,702,701
effective search space used: 1696864824
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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