ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18k03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_506860.1| PREDICTED Oryza sativa (japonica cultivar-group... 167 2e-38
2ref|XM_466661.1| Oryza sativa (japonica cultivar-group), mRNA 167 2e-38
3dbj|AK120252.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 2e-38
4dbj|AK061315.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 2e-38
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 123 2e-25
6dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic D... 123 2e-25
7dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic D... 123 2e-25
8dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic D... 123 2e-25
9dbj|AP005293.2| Oryza sativa (japonica cultivar-group) genomic D... 123 2e-25
10gb|AC007823.38| Homo sapiens 3 BAC RP11-255C15 (Roswell Park Can... 44 0.17
11ref|NM_203176.1| Arabidopsis thaliana unknown protein AT5G48335 ... 42 0.68
12gb|BT015648.1| Arabidopsis thaliana At5g48335 gene, complete cds 42 0.68
13gb|BT015141.1| Arabidopsis thaliana At5g48335 gene, complete cds 42 0.68
14emb|BX833580.1|CNS09Z0C Arabidopsis thaliana Full-length cDNA Co... 42 0.68
15ref|XM_506661.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 2.7
16ref|XM_960865.1| Encephalitozoon cuniculi GB-M1 hypothetical pro... 40 2.7
17emb|AL365495.14| Human DNA sequence from clone RP11-308K19 on ch... 40 2.7
18emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephal... 40 2.7
19dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
20gb|AC103895.3| Papio anubis clone RP41-397E13, complete sequence 40 2.7
21dbj|AP005702.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
22dbj|AK073073.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.7
23dbj|AK072517.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.7
24gb|U32945.1|HSU32945 Human immature B cell Ig heavy chain mRNA, ... 40 2.7 
>ref|XM_506860.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0030C08.45
           mRNA
          Length = 1012

 Score =  167 bits (84), Expect = 2e-38
 Identities = 181/213 (84%), Gaps = 3/213 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   agatccagcgtacattactggtttatcangggaatcatttg---ggtcattatacatgtt 58
           |||||||| |||||| || || |||||| ||||||||| ||   | ||||| |||| |||
Sbjct: 452 agatccagagtacatcaccggcttatcaggggaatcatatgactgatcattgtacaagtt 393

                                                                       
Query: 59  cattgcagcagcccaacgttcactgagaagctgtgaagcctcactggcagaacatccttc 118
           |||||| ||||||||||| ||| |||||||||| | ||||||||||||| ||||||| ||
Sbjct: 392 cattgctgcagcccaacggtcattgagaagctgggcagcctcactggcacaacatccctc 333

                                                                       
Query: 119 caatggtactaatcttgcatggctgtaatcattttgagcattgctgacaaaagcatcatg 178
           ||| |||| ||||||||  || ||||||||||| |||| |||||||| |||||  |||||
Sbjct: 332 caagggtattaatcttgtttgactgtaatcattctgaggattgctgaaaaaagtctcatg 273

                                            
Query: 179 atggataattggaggaaggttctttagtgaagg 211
           | |||||||||| ||||||||||||| ||||||
Sbjct: 272 agggataattggtggaaggttctttaatgaagg 240
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>ref|XM_466661.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 890

 Score =  167 bits (84), Expect = 2e-38
 Identities = 181/213 (84%), Gaps = 3/213 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   agatccagcgtacattactggtttatcangggaatcatttg---ggtcattatacatgtt 58
           |||||||| |||||| || || |||||| ||||||||| ||   | ||||| |||| |||
Sbjct: 477 agatccagagtacatcaccggcttatcaggggaatcatatgactgatcattgtacaagtt 418

                                                                       
Query: 59  cattgcagcagcccaacgttcactgagaagctgtgaagcctcactggcagaacatccttc 118
           |||||| ||||||||||| ||| |||||||||| | ||||||||||||| ||||||| ||
Sbjct: 417 cattgctgcagcccaacggtcattgagaagctgggcagcctcactggcacaacatccctc 358

                                                                       
Query: 119 caatggtactaatcttgcatggctgtaatcattttgagcattgctgacaaaagcatcatg 178
           ||| |||| ||||||||  || ||||||||||| |||| |||||||| |||||  |||||
Sbjct: 357 caagggtattaatcttgtttgactgtaatcattctgaggattgctgaaaaaagtctcatg 298

                                            
Query: 179 atggataattggaggaaggttctttagtgaagg 211
           | |||||||||| ||||||||||||| ||||||
Sbjct: 297 agggataattggtggaaggttctttaatgaagg 265
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>dbj|AK120252.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045I01, full
           insert sequence
          Length = 890

 Score =  167 bits (84), Expect = 2e-38
 Identities = 181/213 (84%), Gaps = 3/213 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   agatccagcgtacattactggtttatcangggaatcatttg---ggtcattatacatgtt 58
           |||||||| |||||| || || |||||| ||||||||| ||   | ||||| |||| |||
Sbjct: 477 agatccagagtacatcaccggcttatcaggggaatcatatgactgatcattgtacaagtt 418

                                                                       
Query: 59  cattgcagcagcccaacgttcactgagaagctgtgaagcctcactggcagaacatccttc 118
           |||||| ||||||||||| ||| |||||||||| | ||||||||||||| ||||||| ||
Sbjct: 417 cattgctgcagcccaacggtcattgagaagctgggcagcctcactggcacaacatccctc 358

                                                                       
Query: 119 caatggtactaatcttgcatggctgtaatcattttgagcattgctgacaaaagcatcatg 178
           ||| |||| ||||||||  || ||||||||||| |||| |||||||| |||||  |||||
Sbjct: 357 caagggtattaatcttgtttgactgtaatcattctgaggattgctgaaaaaagtctcatg 298

                                            
Query: 179 atggataattggaggaaggttctttagtgaagg 211
           | |||||||||| ||||||||||||| ||||||
Sbjct: 297 agggataattggtggaaggttctttaatgaagg 265
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>dbj|AK061315.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-D01, full
           insert sequence
          Length = 1014

 Score =  167 bits (84), Expect = 2e-38
 Identities = 181/213 (84%), Gaps = 3/213 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   agatccagcgtacattactggtttatcangggaatcatttg---ggtcattatacatgtt 58
           |||||||| |||||| || || |||||| ||||||||| ||   | ||||| |||| |||
Sbjct: 452 agatccagagtacatcaccggcttatcaggggaatcatatgactgatcattgtacaagtt 393

                                                                       
Query: 59  cattgcagcagcccaacgttcactgagaagctgtgaagcctcactggcagaacatccttc 118
           |||||| ||||||||||| ||| |||||||||| | ||||||||||||| ||||||| ||
Sbjct: 392 cattgctgcagcccaacggtcattgagaagctgggcagcctcactggcacaacatccctc 333

                                                                       
Query: 119 caatggtactaatcttgcatggctgtaatcattttgagcattgctgacaaaagcatcatg 178
           ||| |||| ||||||||  || ||||||||||| |||| |||||||| |||||  |||||
Sbjct: 332 caagggtattaatcttgtttgactgtaatcattctgaggattgctgaaaaaagtctcatg 273

                                            
Query: 179 atggataattggaggaaggttctttagtgaagg 211
           | |||||||||| ||||||||||||| ||||||
Sbjct: 272 agggataattggtggaaggttctttaatgaagg 240
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  123 bits (62), Expect = 2e-25
 Identities = 113/130 (86%)
 Strand = Plus / Minus

                                                                            
Query: 82       tgagaagctgtgaagcctcactggcagaacatccttccaatggtactaatcttgcatggc 141
                |||||||||| | ||||||||||||| ||||||| ||||| |||| ||||||||  || |
Sbjct: 23931108 tgagaagctgggcagcctcactggcacaacatccctccaagggtattaatcttgtttgac 23931049

                                                                            
Query: 142      tgtaatcattttgagcattgctgacaaaagcatcatgatggataattggaggaaggttct 201
                |||||||||| |||| |||||||| |||||  |||||| |||||||||| ||||||||||
Sbjct: 23931048 tgtaatcattctgaggattgctgaaaaaagtctcatgagggataattggtggaaggttct 23930989

                          
Query: 202      ttagtgaagg 211
                ||| ||||||
Sbjct: 23930988 ttaatgaagg 23930979



 Score =  123 bits (62), Expect = 2e-25
 Identities = 113/130 (86%)
 Strand = Plus / Plus

                                                                            
Query: 82       tgagaagctgtgaagcctcactggcagaacatccttccaatggtactaatcttgcatggc 141
                |||||||||| | ||||||||||||| ||||||| ||||| |||| ||||||||  || |
Sbjct: 23438479 tgagaagctgggcagcctcactggcacaacatccctccaagggtattaatcttgtttgac 23438538

                                                                            
Query: 142      tgtaatcattttgagcattgctgacaaaagcatcatgatggataattggaggaaggttct 201
                |||||||||| |||| |||||||| |||||  |||||| |||||||||| ||||||||||
Sbjct: 23438539 tgtaatcattctgaggattgctgaaaaaagtctcatgagggataattggtggaaggttct 23438598

                          
Query: 202      ttagtgaagg 211
                ||| ||||||
Sbjct: 23438599 ttaatgaagg 23438608
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>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1791_B03
          Length = 166214

 Score =  123 bits (62), Expect = 2e-25
 Identities = 113/130 (86%)
 Strand = Plus / Plus

                                                                        
Query: 82   tgagaagctgtgaagcctcactggcagaacatccttccaatggtactaatcttgcatggc 141
            |||||||||| | ||||||||||||| ||||||| ||||| |||| ||||||||  || |
Sbjct: 4162 tgagaagctgggcagcctcactggcacaacatccctccaagggtattaatcttgtttgac 4221

                                                                        
Query: 142  tgtaatcattttgagcattgctgacaaaagcatcatgatggataattggaggaaggttct 201
            |||||||||| |||| |||||||| |||||  |||||| |||||||||| ||||||||||
Sbjct: 4222 tgtaatcattctgaggattgctgaaaaaagtctcatgagggataattggtggaaggttct 4281

                      
Query: 202  ttagtgaagg 211
            ||| ||||||
Sbjct: 4282 ttaatgaagg 4291
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>dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0030C08
          Length = 163423

 Score =  123 bits (62), Expect = 2e-25
 Identities = 113/130 (86%)
 Strand = Plus / Minus

                                                                          
Query: 82     tgagaagctgtgaagcctcactggcagaacatccttccaatggtactaatcttgcatggc 141
              |||||||||| | ||||||||||||| ||||||| ||||| |||| ||||||||  || |
Sbjct: 152774 tgagaagctgggcagcctcactggcacaacatccctccaagggtattaatcttgtttgac 152715

                                                                          
Query: 142    tgtaatcattttgagcattgctgacaaaagcatcatgatggataattggaggaaggttct 201
              |||||||||| |||| |||||||| |||||  |||||| |||||||||| ||||||||||
Sbjct: 152714 tgtaatcattctgaggattgctgaaaaaagtctcatgagggataattggtggaaggttct 152655

                        
Query: 202    ttagtgaagg 211
              ||| ||||||
Sbjct: 152654 ttaatgaagg 152645
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>dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0496E03
          Length = 138622

 Score =  123 bits (62), Expect = 2e-25
 Identities = 113/130 (86%)
 Strand = Plus / Minus

                                                                         
Query: 82    tgagaagctgtgaagcctcactggcagaacatccttccaatggtactaatcttgcatggc 141
             |||||||||| | ||||||||||||| ||||||| ||||| |||| ||||||||  || |
Sbjct: 65072 tgagaagctgggcagcctcactggcacaacatccctccaagggtattaatcttgtttgac 65013

                                                                         
Query: 142   tgtaatcattttgagcattgctgacaaaagcatcatgatggataattggaggaaggttct 201
             |||||||||| |||| |||||||| |||||  |||||| |||||||||| ||||||||||
Sbjct: 65012 tgtaatcattctgaggattgctgaaaaaagtctcatgagggataattggtggaaggttct 64953

                       
Query: 202   ttagtgaagg 211
             ||| ||||||
Sbjct: 64952 ttaatgaagg 64943
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>dbj|AP005293.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1653_F07, complete sequence
          Length = 110109

 Score =  123 bits (62), Expect = 2e-25
 Identities = 113/130 (86%)
 Strand = Plus / Plus

                                                                         
Query: 82    tgagaagctgtgaagcctcactggcagaacatccttccaatggtactaatcttgcatggc 141
             |||||||||| | ||||||||||||| ||||||| ||||| |||| ||||||||  || |
Sbjct: 57154 tgagaagctgggcagcctcactggcacaacatccctccaagggtattaatcttgtttgac 57213

                                                                         
Query: 142   tgtaatcattttgagcattgctgacaaaagcatcatgatggataattggaggaaggttct 201
             |||||||||| |||| |||||||| |||||  |||||| |||||||||| ||||||||||
Sbjct: 57214 tgtaatcattctgaggattgctgaaaaaagtctcatgagggataattggtggaaggttct 57273

                       
Query: 202   ttagtgaagg 211
             ||| ||||||
Sbjct: 57274 ttaatgaagg 57283
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>gb|AC007823.38| Homo sapiens 3 BAC RP11-255C15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 127759

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 130   atcttgcatggctgtaatcatt 151
             ||||||||||||||||||||||
Sbjct: 48671 atcttgcatggctgtaatcatt 48650
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>ref|NM_203176.1| Arabidopsis thaliana unknown protein AT5G48335 mRNA, complete cds
          Length = 662

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 59  cattgcagcagcccaacgttcactgagaagctg 91
           ||||||||| | |||||| ||||||||||||||
Sbjct: 336 cattgcagctgtccaacgatcactgagaagctg 304
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>gb|BT015648.1| Arabidopsis thaliana At5g48335 gene, complete cds
          Length = 345

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 59  cattgcagcagcccaacgttcactgagaagctg 91
           ||||||||| | |||||| ||||||||||||||
Sbjct: 258 cattgcagctgtccaacgatcactgagaagctg 226
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>gb|BT015141.1| Arabidopsis thaliana At5g48335 gene, complete cds
          Length = 604

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 59  cattgcagcagcccaacgttcactgagaagctg 91
           ||||||||| | |||||| ||||||||||||||
Sbjct: 324 cattgcagctgtccaacgatcactgagaagctg 292
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>emb|BX833580.1|CNS09Z0C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL63ZD01 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 632

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 59  cattgcagcagcccaacgttcactgagaagctg 91
           ||||||||| | |||||| ||||||||||||||
Sbjct: 336 cattgcagctgtccaacgatcactgagaagctg 304
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>ref|XM_506661.1| PREDICTED Oryza sativa (japonica cultivar-group), P0027G10.36-1
           mRNA
          Length = 917

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 119 caatggtactaatcttgcat 138
           ||||||||||||||||||||
Sbjct: 758 caatggtactaatcttgcat 739
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>ref|XM_960865.1| Encephalitozoon cuniculi GB-M1 hypothetical protein (ECU01_1200)
            partial mRNA
          Length = 1131

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 137  atggctgtaatcattttgagcatt 160
            |||||||||| |||||||||||||
Sbjct: 1038 atggctgtaaacattttgagcatt 1015
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>emb|AL365495.14| Human DNA sequence from clone RP11-308K19 on chromosome 10 Contains
             part of the gene for a novel protein (FLJ10210), complete
             sequence
          Length = 185049

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   tcttgcatggctgtaatcat 150
             ||||||||||||||||||||
Sbjct: 98111 tcttgcatggctgtaatcat 98092
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>emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 209982

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 137    atggctgtaatcattttgagcatt 160
              |||||||||| |||||||||||||
Sbjct: 142981 atggctgtaaacattttgagcatt 143004
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 119      caatggtactaatcttgcat 138
                ||||||||||||||||||||
Sbjct: 12781051 caatggtactaatcttgcat 12781032
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>gb|AC103895.3| Papio anubis clone RP41-397E13, complete sequence
          Length = 166686

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     tatacatgttcattgcagca 68
              ||||||||||||||||||||
Sbjct: 137711 tatacatgttcattgcagca 137730
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>dbj|AP005702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0027G10
          Length = 184759

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   caatggtactaatcttgcat 138
             ||||||||||||||||||||
Sbjct: 88828 caatggtactaatcttgcat 88809
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>dbj|AK073073.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033007M03, full
           insert sequence
          Length = 917

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 119 caatggtactaatcttgcat 138
           ||||||||||||||||||||
Sbjct: 758 caatggtactaatcttgcat 739
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>dbj|AK072517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133J02, full
           insert sequence
          Length = 4013

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 119 caatggtactaatcttgcat 138
           ||||||||||||||||||||
Sbjct: 781 caatggtactaatcttgcat 762
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>gb|U32945.1|HSU32945 Human immature B cell Ig heavy chain mRNA, third
           complementarity-determining region, clone MBT-10,
           partial cds
          Length = 98

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 tgacaaaagcatcatgatgg 182
           ||||||||||||||||||||
Sbjct: 64  tgacaaaagcatcatgatgg 45


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,878,463
Number of Sequences: 3902068
Number of extensions: 1878463
Number of successful extensions: 134540
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134452
Number of HSP's gapped (non-prelim): 88
length of query: 211
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 189
effective length of database: 17,147,199,772
effective search space: 3240820756908
effective search space used: 3240820756908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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