ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18j23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106521.1| Zea mays PCO093643 mRNA sequence Length = 506 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 359 tcattcgttcattacaggcttgttctcgttggccttg 395 |||||||||||| ||||||||||||||||| |||||| Sbjct: 233 tcattcgttcatcacaggcttgttctcgttagccttg 197
>dbj|AK061920.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-B08, full insert sequence Length = 394 Score = 52.0 bits (26), Expect = 0.002 Identities = 60/72 (83%) Strand = Plus / Minus Query: 359 tcattcgttcattacaggcttgttctcgttggccttgaacctctagttcttnggcttgtg 418 |||||| ||||| |||||||||||||| |||||||| ||||| | ||| ||||| || Sbjct: 239 tcattcattcatcacaggcttgttctcactggccttgggcctctgctcctttggcttttg 180 Query: 419 ctcttncatttt 430 ||||| |||||| Sbjct: 179 ctcttccatttt 168
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 52.0 bits (26), Expect = 0.002 Identities = 60/72 (83%) Strand = Plus / Minus Query: 359 tcattcgttcattacaggcttgttctcgttggccttgaacctctagttcttnggcttgtg 418 |||||| ||||| |||||||||||||| |||||||| ||||| | ||| ||||| || Sbjct: 12286702 tcattcattcatcacaggcttgttctcactggccttgggcctctgctcctttggcttttg 12286643 Query: 419 ctcttncatttt 430 ||||| |||||| Sbjct: 12286642 ctcttccatttt 12286631
>dbj|AK120436.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098D06, full insert sequence Length = 364 Score = 52.0 bits (26), Expect = 0.002 Identities = 60/72 (83%) Strand = Plus / Minus Query: 359 tcattcgttcattacaggcttgttctcgttggccttgaacctctagttcttnggcttgtg 418 |||||| ||||| |||||||||||||| |||||||| ||||| | ||| ||||| || Sbjct: 209 tcattcattcatcacaggcttgttctcactggccttgggcctctgctcctttggcttttg 150 Query: 419 ctcttncatttt 430 ||||| |||||| Sbjct: 149 ctcttccatttt 138
>dbj|AK073415.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043B09, full insert sequence Length = 1250 Score = 52.0 bits (26), Expect = 0.002 Identities = 60/72 (83%) Strand = Plus / Minus Query: 359 tcattcgttcattacaggcttgttctcgttggccttgaacctctagttcttnggcttgtg 418 |||||| ||||| |||||||||||||| |||||||| ||||| | ||| ||||| || Sbjct: 1081 tcattcattcatcacaggcttgttctcactggccttgggcctctgctcctttggcttttg 1022 Query: 419 ctcttncatttt 430 ||||| |||||| Sbjct: 1021 ctcttccatttt 1010
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 52.0 bits (26), Expect = 0.002 Identities = 60/72 (83%) Strand = Plus / Minus Query: 359 tcattcgttcattacaggcttgttctcgttggccttgaacctctagttcttnggcttgtg 418 |||||| ||||| |||||||||||||| |||||||| ||||| | ||| ||||| || Sbjct: 12241072 tcattcattcatcacaggcttgttctcactggccttgggcctctgctcctttggcttttg 12241013 Query: 419 ctcttncatttt 430 ||||| |||||| Sbjct: 12241012 ctcttccatttt 12241001
>emb|AL713942.4|CNS07YPB Oryza sativa chromosome 12, . BAC OSJNBa0009F05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 163702 Score = 52.0 bits (26), Expect = 0.002 Identities = 60/72 (83%) Strand = Plus / Minus Query: 359 tcattcgttcattacaggcttgttctcgttggccttgaacctctagttcttnggcttgtg 418 |||||| ||||| |||||||||||||| |||||||| ||||| | ||| ||||| || Sbjct: 1067 tcattcattcatcacaggcttgttctcactggccttgggcctctgctcctttggcttttg 1008 Query: 419 ctcttncatttt 430 ||||| |||||| Sbjct: 1007 ctcttccatttt 996
>emb|AL713955.4|CNS07YP3 Oryza sativa chromosome 12, . BAC OSJNBa0017L03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159296 Score = 52.0 bits (26), Expect = 0.002 Identities = 60/72 (83%) Strand = Plus / Plus Query: 359 tcattcgttcattacaggcttgttctcgttggccttgaacctctagttcttnggcttgtg 418 |||||| ||||| |||||||||||||| |||||||| ||||| | ||| ||||| || Sbjct: 10615 tcattcattcatcacaggcttgttctcactggccttgggcctctgctcctttggcttttg 10674 Query: 419 ctcttncatttt 430 ||||| |||||| Sbjct: 10675 ctcttccatttt 10686
>gb|AC135864.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0071K13, complete sequence Length = 176150 Score = 44.1 bits (22), Expect = 0.53 Identities = 37/42 (88%) Strand = Plus / Plus Query: 354 gatggtcattcgttcattacaggcttgttctcgttggccttg 395 |||| |||||| |||| ||||||||||||||| |||||||| Sbjct: 73014 gatgctcattctgtcatcacaggcttgttctcgctggccttg 73055
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.53 Identities = 37/42 (88%) Strand = Plus / Plus Query: 354 gatggtcattcgttcattacaggcttgttctcgttggccttg 395 |||| |||||| |||| ||||||||||||||| |||||||| Sbjct: 14963227 gatgctcattctgtcatcacaggcttgttctcgctggccttg 14963268
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.53 Identities = 37/42 (88%) Strand = Plus / Plus Query: 354 gatggtcattcgttcattacaggcttgttctcgttggccttg 395 |||| |||||| |||| ||||||||||||||| |||||||| Sbjct: 15044922 gatgctcattctgtcatcacaggcttgttctcgctggccttg 15044963
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence Length = 142376 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 336 gcatcggactgtccggaggatggt 359 |||||||||||||||| ||||||| Sbjct: 116206 gcatcggactgtccggtggatggt 116229
>ref|XM_718393.1| Candida albicans SC5314 positive regulator of alkaline-induced genes (CaO19_4800), mRNA Length = 2358 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 aaaaatgtaatttttacaccttca 24 ||||||||||||||| |||||||| Sbjct: 766 aaaaatgtaattttttcaccttca 743
>ref|XM_718203.1| Candida albicans SC5314 positive regulator of alkaline-induced genes (CaO19_12263), mRNA Length = 2358 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 aaaaatgtaatttttacaccttca 24 ||||||||||||||| |||||||| Sbjct: 766 aaaaatgtaattttttcaccttca 743
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 acttcatcttcggcggcggc 507 |||||||||||||||||||| Sbjct: 11007650 acttcatcttcggcggcggc 11007631
>gb|AC102769.11| Mus musculus chromosome 17, clone RP23-89A3, complete sequence Length = 162417 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 agaagtggattccaaaacca 149 |||||||||||||||||||| Sbjct: 34302 agaagtggattccaaaacca 34283
>gb|AY343494.2| Oryza sativa (indica cultivar-group) putative pectinesterase mRNA, complete cds Length = 1302 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 acttcatcttcggcggcggc 507 |||||||||||||||||||| Sbjct: 648 acttcatcttcggcggcggc 667
>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence Length = 167588 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 acttcatcttcggcggcggc 507 |||||||||||||||||||| Sbjct: 125472 acttcatcttcggcggcggc 125491
>emb|CR388143.6| Zebrafish DNA sequence from clone DKEY-189O20 in linkage group 21, complete sequence Length = 243457 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 577 tttgatctccacatagtttg 596 |||||||||||||||||||| Sbjct: 62662 tttgatctccacatagtttg 62681
>emb|BX323799.14| Zebrafish DNA sequence from clone CH211-159B19 in linkage group 13, complete sequence Length = 188145 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 tgtaatttttacaccttcaaaaat 29 ||||||||||||||||| |||||| Sbjct: 94773 tgtaatttttacaccttaaaaaat 94750
>gb|AC023712.5| Drosophila melanogaster X BAC RP98-1M22 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170129 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 aaaaatgtaatttttacaccttca 24 |||| ||||||||||||||||||| Sbjct: 19819 aaaattgtaatttttacaccttca 19842
>gb|AC023692.5| Drosophila melanogaster X BAC RP98-15B10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163090 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 aaaaatgtaatttttacaccttca 24 |||| ||||||||||||||||||| Sbjct: 31130 aaaattgtaatttttacaccttca 31107
>gb|AC069220.11| Homo sapiens 3 BAC RP11-115B16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 157448 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 69 aaaagaagaaacgtgagaaatagt 92 ||||||||||| |||||||||||| Sbjct: 49632 aaaagaagaaaagtgagaaatagt 49655
>gb|AC055723.22| Homo sapiens 3 BAC RP11-201E8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166787 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 taattgtacttagaacaaag 58 |||||||||||||||||||| Sbjct: 108212 taattgtacttagaacaaag 108231
>gb|AC008550.5| Homo sapiens chromosome 5 clone CTC-507E12, complete sequence Length = 125406 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 64 ttcataaaagaagaaacgtgagaa 87 |||||||||||||||| ||||||| Sbjct: 118506 ttcataaaagaagaaatgtgagaa 118529
>gb|AC156639.2| Mus musculus BAC clone RP23-301M11 from chromosome 9, complete sequence Length = 188292 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 atgttcacaccatccatttt 297 |||||||||||||||||||| Sbjct: 114356 atgttcacaccatccatttt 114375
>gb|AC000054.10| Homo sapiens chromosome 3 clone p856 map 3q26, complete sequence Length = 64211 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 aaaagaagaaacgtgagaaatagt 92 ||||||||||| |||||||||||| Sbjct: 37641 aaaagaagaaaagtgagaaatagt 37618
>ref|XM_624873.1| PREDICTED: Apis mellifera similar to DNA-repair protein complementing XP-C cells homolog (Xeroderma pigmentosum group C complementing protein homolog) (XPCDM) (Mutagen-sensitive 209 protein) (LOC552498), mRNA Length = 2260 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 aaggtttgttcataaaagaa 75 |||||||||||||||||||| Sbjct: 1953 aaggtttgttcataaaagaa 1972
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 acttcatcttcggcggcggc 507 |||||||||||||||||||| Sbjct: 11004413 acttcatcttcggcggcggc 11004394
>dbj|AP006506.1| Mus musculus genomic DNA, chromosome 4, clone: RP23-284M8, complete sequence Length = 255195 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 375 ggcttgttctcgttggccttgaac 398 ||||||||||| |||||||||||| Sbjct: 13203 ggcttgttctccttggccttgaac 13180
>dbj|AP006505.1| Mus musculus genomic DNA, chromosome 4, clone: RP23-266A3, complete sequence Length = 199759 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 375 ggcttgttctcgttggccttgaac 398 ||||||||||| |||||||||||| Sbjct: 131775 ggcttgttctccttggccttgaac 131752
>gb|AC079924.6| Homo sapiens BAC clone RP11-469L8 from 2, complete sequence Length = 55282 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 ttgttcataaaagaagaaac 80 |||||||||||||||||||| Sbjct: 10938 ttgttcataaaagaagaaac 10957
>gb|AC010348.4|AC010348 Homo sapiens chromosome 5 clone CTD-2018K14, complete sequence Length = 162868 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 64 ttcataaaagaagaaacgtgagaa 87 |||||||||||||||| ||||||| Sbjct: 77362 ttcataaaagaagaaatgtgagaa 77385
>gb|AF173843.1|AF173843 Candida albicans strain CAI4 Rim20p (RIM20) gene, complete cds Length = 2960 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 aaaaatgtaatttttacaccttca 24 ||||||||||||||| |||||||| Sbjct: 1201 aaaaatgtaattttttcaccttca 1178
>dbj|AK100728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023117F04, full insert sequence Length = 1436 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 acttcatcttcggcggcggc 507 |||||||||||||||||||| Sbjct: 664 acttcatcttcggcggcggc 683
>gb|AF080235.1|AF080235 Streptomyces cyanogenus landomycin biosynthetic gene cluster, complete sequence Length = 34644 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 cttgttctcgttggccttgaacct 400 ||||| |||||||||||||||||| Sbjct: 12730 cttgtactcgttggccttgaacct 12707
>gb|AE003433.3| Drosophila melanogaster chromosome X, section 17 of 74 of the complete sequence Length = 303602 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 aaaaatgtaatttttacaccttca 24 |||| ||||||||||||||||||| Sbjct: 180520 aaaattgtaatttttacaccttca 180543
>gb|AC148600.2| Xenopus tropicalis clone CH216-62H10, complete sequence Length = 162075 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 agtcacatgattggcagcta 325 |||||||||||||||||||| Sbjct: 51581 agtcacatgattggcagcta 51600
>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042B10, from chromosome 3, complete sequence Length = 144205 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 acttcatcttcggcggcggc 507 |||||||||||||||||||| Sbjct: 51135 acttcatcttcggcggcggc 51116
>emb|CT010437.15| Mouse DNA sequence from clone RP23-333O22 on chromosome 17, complete sequence Length = 172696 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 agaagtggattccaaaacca 149 |||||||||||||||||||| Sbjct: 49745 agaagtggattccaaaacca 49764
>emb|AL611967.21| Mouse DNA sequence from clone RP23-121D17 on chromosome 4, complete sequence Length = 173824 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 375 ggcttgttctcgttggccttgaac 398 ||||||||||| |||||||||||| Sbjct: 154787 ggcttgttctccttggccttgaac 154810 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,153,296 Number of Sequences: 3902068 Number of extensions: 5153296 Number of successful extensions: 91263 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91022 Number of HSP's gapped (non-prelim): 241 length of query: 608 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 585 effective length of database: 17,143,297,704 effective search space: 10028829156840 effective search space used: 10028829156840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
